HEADER HYDROLASE 22-MAR-23 8OIA TITLE TRICHOMONAS VAGINALIS RIBOSIDE HYDROLASE IN COMPLEX WITH D-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_092730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NH-FOLD, NUCLEOSIDE HYDROLASE, RIBOSIDE HYDROLASE, NICOTINAMIDE KEYWDS 2 RIBOSIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PATRONE,B.J.STOCKMAN,M.DEGANO REVDAT 2 06-SEP-23 8OIA 1 JRNL REVDAT 1 02-AUG-23 8OIA 0 JRNL AUTH M.PATRONE,G.S.GALASYN,F.KERIN,M.M.NYITRAY,D.W.PARKIN, JRNL AUTH 2 B.J.STOCKMAN,M.DEGANO JRNL TITL A RIBOSIDE HYDROLASE THAT SALVAGES BOTH NUCLEOBASES AND JRNL TITL 2 NICOTINAMIDE IN THE AUXOTROPHIC PARASITE TRICHOMONAS JRNL TITL 3 VAGINALIS. JRNL REF J.BIOL.CHEM. V. 299 05077 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37482279 JRNL DOI 10.1016/J.JBC.2023.105077 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.126 REMARK 3 FREE R VALUE TEST SET COUNT : 3222 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4365 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89700 REMARK 3 B22 (A**2) : -1.07800 REMARK 3 B33 (A**2) : 1.54800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.41100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.460 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.249 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11189 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 10541 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15162 ; 1.379 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 24402 ; 0.464 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1369 ; 6.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ; 5.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1907 ;14.992 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1712 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12684 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2408 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2374 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 71 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5504 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 336 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.112 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5451 ; 2.145 ; 2.526 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5450 ; 2.145 ; 2.526 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6803 ; 3.259 ; 5.669 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 6804 ; 3.259 ; 5.669 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5738 ; 2.541 ; 2.723 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 5739 ; 2.540 ; 2.724 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 8351 ; 3.931 ; 6.124 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 8352 ; 3.931 ; 6.125 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 346 NULL REMARK 3 1 A 2 A 346 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 2 A 346 NULL REMARK 3 2 A 2 A 346 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 2 A 346 NULL REMARK 3 3 A 2 A 346 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 4 A 2 A 346 NULL REMARK 3 4 A 2 A 346 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 A 2 A 346 NULL REMARK 3 5 A 2 A 346 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 6 A 2 A 346 NULL REMARK 3 6 A 2 A 346 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9909 0.0383 20.2443 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: 0.0255 REMARK 3 T33: 0.1032 T12: 0.0163 REMARK 3 T13: 0.0263 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3610 L22: 1.5575 REMARK 3 L33: 0.5056 L12: -0.0391 REMARK 3 L13: -0.0515 L23: -0.3482 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: 0.1284 S13: 0.0895 REMARK 3 S21: -0.1053 S22: -0.0038 S23: 0.0519 REMARK 3 S31: -0.0630 S32: -0.0753 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -12.4190 -35.1762 24.0310 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0112 REMARK 3 T33: 0.0838 T12: 0.0100 REMARK 3 T13: -0.0204 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.1080 L22: 1.5406 REMARK 3 L33: 0.7120 L12: 0.0485 REMARK 3 L13: -0.0828 L23: 0.0938 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: 0.0815 S13: 0.0076 REMARK 3 S21: -0.0519 S22: -0.0466 S23: 0.0922 REMARK 3 S31: -0.0528 S32: -0.0473 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 46.9958 -25.8584 23.9371 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0142 REMARK 3 T33: 0.1115 T12: 0.0106 REMARK 3 T13: 0.0358 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.1468 L22: 1.5362 REMARK 3 L33: 0.6591 L12: -0.1076 REMARK 3 L13: -0.0073 L23: -0.0668 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0979 S13: -0.0255 REMARK 3 S21: -0.0620 S22: -0.0520 S23: -0.0990 REMARK 3 S31: 0.0528 S32: 0.0564 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 19.6903 -60.7625 20.5311 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: 0.0313 REMARK 3 T33: 0.1183 T12: 0.0184 REMARK 3 T13: -0.0061 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.3020 L22: 1.6667 REMARK 3 L33: 0.4875 L12: -0.1738 REMARK 3 L13: 0.0134 L23: 0.1163 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.1265 S13: -0.0998 REMARK 3 S21: -0.1234 S22: -0.0195 S23: -0.0334 REMARK 3 S31: 0.0477 S32: 0.0853 S33: 0.0134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8OIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.85 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 43.981 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.30500 REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.60800 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM CITRATE DIBASIC PH REMARK 280 4.85, 15% PEG 3300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.49750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.81100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.49750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.81100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 CYS A 79 REMARK 465 PRO A 80 REMARK 465 GLU A 81 REMARK 465 ILE A 82 REMARK 465 HIS A 83 REMARK 465 GLY A 84 REMARK 465 GLU A 85 REMARK 465 LYS A 305 REMARK 465 ASP A 306 REMARK 465 PRO A 307 REMARK 465 THR A 308 REMARK 465 LYS A 309 REMARK 465 ILE A 310 REMARK 465 VAL A 311 REMARK 465 LYS A 347 REMARK 465 MET B 1 REMARK 465 LYS B 347 REMARK 465 MET C 1 REMARK 465 LYS C 347 REMARK 465 MET D 1 REMARK 465 CYS D 79 REMARK 465 PRO D 80 REMARK 465 GLU D 81 REMARK 465 ILE D 82 REMARK 465 HIS D 83 REMARK 465 GLY D 84 REMARK 465 GLU D 85 REMARK 465 LYS D 304 REMARK 465 LYS D 305 REMARK 465 ASP D 306 REMARK 465 LYS D 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 231 OH TYR C 231 1455 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 159.44 -49.35 REMARK 500 ASP A 135 -81.28 -127.47 REMARK 500 THR A 142 16.02 -144.05 REMARK 500 SER A 144 151.16 -48.45 REMARK 500 ALA A 168 147.90 -171.66 REMARK 500 PHE A 171 -59.99 -122.83 REMARK 500 ASN A 176 -70.89 -122.68 REMARK 500 ASP A 188 78.56 -158.22 REMARK 500 SER A 232 88.01 -153.17 REMARK 500 THR B 73 10.82 -141.27 REMARK 500 ASP B 135 -81.76 -128.35 REMARK 500 THR B 142 15.09 -143.04 REMARK 500 SER B 144 150.43 -46.80 REMARK 500 ALA B 168 148.93 -170.57 REMARK 500 PHE B 171 -60.06 -120.96 REMARK 500 ASN B 176 -73.02 -123.15 REMARK 500 ASP B 188 77.65 -159.98 REMARK 500 SER B 232 89.47 -153.01 REMARK 500 LYS B 305 -76.58 -62.67 REMARK 500 ASP B 306 77.19 -117.42 REMARK 500 THR C 73 12.72 -142.44 REMARK 500 ASP C 135 -82.48 -129.21 REMARK 500 THR C 142 14.79 -142.63 REMARK 500 SER C 144 150.99 -47.53 REMARK 500 ALA C 168 149.74 -170.57 REMARK 500 PHE C 171 -60.67 -121.13 REMARK 500 ASN C 176 -71.06 -123.56 REMARK 500 ASP C 188 78.43 -160.07 REMARK 500 SER C 232 89.55 -152.53 REMARK 500 LYS C 305 -78.95 -63.13 REMARK 500 SER D 76 160.03 -49.25 REMARK 500 ASP D 135 -81.42 -128.99 REMARK 500 THR D 142 16.30 -143.87 REMARK 500 SER D 144 150.48 -47.25 REMARK 500 ALA D 168 147.85 -172.03 REMARK 500 PHE D 171 -59.03 -122.06 REMARK 500 ASN D 176 -71.46 -123.61 REMARK 500 ASP D 188 79.00 -158.81 REMARK 500 SER D 232 87.04 -152.21 REMARK 500 HIS D 262 -62.64 -90.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 15 OD1 77.9 REMARK 620 3 ASP A 15 OD2 73.3 53.9 REMARK 620 4 THR A 142 O 91.0 132.1 78.3 REMARK 620 5 ASP A 263 OD2 138.6 78.7 65.3 80.2 REMARK 620 6 RIB A 402 O2 116.0 86.3 137.6 138.4 95.9 REMARK 620 7 RIB A 402 O3 144.2 135.5 132.6 74.9 72.1 64.7 REMARK 620 8 HOH A 505 O 69.9 125.9 141.5 91.4 149.8 71.4 77.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 15 OD1 79.4 REMARK 620 3 ASP B 15 OD2 73.2 54.9 REMARK 620 4 THR B 142 O 89.0 132.6 77.8 REMARK 620 5 ASP B 263 OD2 138.5 79.2 65.4 80.0 REMARK 620 6 RIB B 402 O3 138.0 138.4 137.9 76.1 77.9 REMARK 620 7 RIB B 402 O2 123.3 86.2 136.1 135.9 90.2 59.7 REMARK 620 8 HOH B 519 O 71.4 124.5 143.7 93.5 148.5 70.6 73.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD1 REMARK 620 2 ASP C 15 OD1 80.0 REMARK 620 3 ASP C 15 OD2 74.3 55.3 REMARK 620 4 THR C 142 O 90.7 135.0 79.7 REMARK 620 5 ASP C 263 OD2 139.6 78.9 65.4 80.7 REMARK 620 6 RIB C 402 O3 137.7 139.1 135.6 71.8 76.7 REMARK 620 7 RIB C 402 O2 120.9 88.1 139.1 132.4 92.3 60.8 REMARK 620 8 HOH C 518 O 74.0 123.8 147.6 94.7 145.6 69.6 65.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 ASP D 15 OD1 76.7 REMARK 620 3 ASP D 15 OD2 72.3 54.2 REMARK 620 4 THR D 142 O 89.2 132.9 78.7 REMARK 620 5 ASP D 263 OD2 138.5 80.2 66.2 81.8 REMARK 620 6 RIB D 402 O2 114.1 84.3 136.4 141.2 97.1 REMARK 620 7 RIB D 402 O3 139.1 139.3 138.9 76.9 77.9 65.1 REMARK 620 8 HOH D 509 O 72.8 127.0 143.0 89.0 146.7 70.7 68.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8OI7 RELATED DB: PDB REMARK 900 TRICHOMONAS VAGINALIS RIBOSIDE HYDROLASE REMARK 900 RELATED ID: 8OI9 RELATED DB: PDB REMARK 900 TRICHOMONAS VAGINALIS RIBOSIDE HYDROLASE IN COMPLEX WITH 5- REMARK 900 METHYLURIDINE REMARK 900 RELATED ID: 8OIB RELATED DB: PDB REMARK 900 TRICHOMONAS VAGINALIS RIBOSIDE HYDROLASE IN COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 8OIC RELATED DB: PDB REMARK 900 TRICHOMONAS VAGINALIS RIBOSIDE HYDROLASE (HIS-TAGGED) DBREF 8OIA A 1 347 UNP A2FTT0 A2FTT0_TRIV3 1 347 DBREF 8OIA B 1 347 UNP A2FTT0 A2FTT0_TRIV3 1 347 DBREF 8OIA C 1 347 UNP A2FTT0 A2FTT0_TRIV3 1 347 DBREF 8OIA D 1 347 UNP A2FTT0 A2FTT0_TRIV3 1 347 SEQRES 1 A 347 MET SER ILE LYS CYS ALA LEU ASP CYS ASP PRO GLY HIS SEQRES 2 A 347 ASP ASP LEU ALA MET ILE MET LEU ALA VAL TYR SER PRO SEQRES 3 A 347 LYS LEU ASP VAL GLN TYR ILE SER THR THR HIS GLY ASN SEQRES 4 A 347 GLN THR VAL ASN LYS THR TYR GLN ASN ALA ARG ARG THR SEQRES 5 A 347 LEU ASN LEU ILE LYS ARG ALA ASP LYS ILE PRO VAL TYR SEQRES 6 A 347 ARG GLY TYR SER LYS PRO LEU THR ARG GLU SER VAL ALA SEQRES 7 A 347 CYS PRO GLU ILE HIS GLY GLU SER GLY LEU GLY GLY VAL SEQRES 8 A 347 ASP TRP SER GLU ILE ASP ARG THR MET PRO ARG ASN PRO SEQRES 9 A 347 ALA LEU ASP ILE LEU GLY TYR LYS ASP GLU SER GLU LEU SEQRES 10 A 347 ARG PRO ASP ASP PHE PHE LYS HIS LEU HIS ARG LEU VAL SEQRES 11 A 347 SER ALA ALA GLU ASP LYS PHE ASP ILE ILE SER THR GLY SEQRES 12 A 347 SER GLU THR ASN ILE ALA GLN TYR LEU LEU ALA TYR PRO SEQRES 13 A 347 GLU ASP ALA LYS LYS ILE ARG MET THR THR MET ALA GLY SEQRES 14 A 347 ASN PHE MET ILE VAL GLY ASN ILE MET PRO PHE ALA GLU SEQRES 15 A 347 PHE ASN VAL LEU ILE ASP PRO GLU ALA ILE SER ASN ILE SEQRES 16 A 347 LEU GLN SER GLY VAL ASP TYR THR PHE ALA ALA PRO LEU SEQRES 17 A 347 ASP ILE THR HIS THR VAL LEU VAL THR GLU LYS VAL ILE SEQRES 18 A 347 ASN ASP ILE LYS ALA ALA THR GLU PRO TYR SER PRO LYS SEQRES 19 A 347 PHE THR GLU MET ILE ILE LYS LEU LEU PHE PHE PHE LYS SEQRES 20 A 347 ASP THR TYR ARG ASP VAL PHE GLY PHE ILE ASP PRO PRO SEQRES 21 A 347 LEU HIS ASP PRO VAL ALA ALA PHE HIS LEU ILE ALA PRO SEQRES 22 A 347 GLU TRP PHE GLU HIS VAL ARG CYS HIS VAL ASP ILE GLU SEQRES 23 A 347 THR LYS GLY GLU TYR THR TYR GLY CYS CYS CYS THR ASN SEQRES 24 A 347 LEU ILE LEU LYS LYS LYS ASP PRO THR LYS ILE VAL LYS SEQRES 25 A 347 PRO ASP ASN ALA THR VAL CYS LEU LYS LEU LYS GLU GLY SEQRES 26 A 347 GLY HIS ASP ALA PHE TRP ASN GLN MET ILE THR VAL TRP SEQRES 27 A 347 GLY GLU ILE ALA LYS GLU ILE GLY LYS SEQRES 1 B 347 MET SER ILE LYS CYS ALA LEU ASP CYS ASP PRO GLY HIS SEQRES 2 B 347 ASP ASP LEU ALA MET ILE MET LEU ALA VAL TYR SER PRO SEQRES 3 B 347 LYS LEU ASP VAL GLN TYR ILE SER THR THR HIS GLY ASN SEQRES 4 B 347 GLN THR VAL ASN LYS THR TYR GLN ASN ALA ARG ARG THR SEQRES 5 B 347 LEU ASN LEU ILE LYS ARG ALA ASP LYS ILE PRO VAL TYR SEQRES 6 B 347 ARG GLY TYR SER LYS PRO LEU THR ARG GLU SER VAL ALA SEQRES 7 B 347 CYS PRO GLU ILE HIS GLY GLU SER GLY LEU GLY GLY VAL SEQRES 8 B 347 ASP TRP SER GLU ILE ASP ARG THR MET PRO ARG ASN PRO SEQRES 9 B 347 ALA LEU ASP ILE LEU GLY TYR LYS ASP GLU SER GLU LEU SEQRES 10 B 347 ARG PRO ASP ASP PHE PHE LYS HIS LEU HIS ARG LEU VAL SEQRES 11 B 347 SER ALA ALA GLU ASP LYS PHE ASP ILE ILE SER THR GLY SEQRES 12 B 347 SER GLU THR ASN ILE ALA GLN TYR LEU LEU ALA TYR PRO SEQRES 13 B 347 GLU ASP ALA LYS LYS ILE ARG MET THR THR MET ALA GLY SEQRES 14 B 347 ASN PHE MET ILE VAL GLY ASN ILE MET PRO PHE ALA GLU SEQRES 15 B 347 PHE ASN VAL LEU ILE ASP PRO GLU ALA ILE SER ASN ILE SEQRES 16 B 347 LEU GLN SER GLY VAL ASP TYR THR PHE ALA ALA PRO LEU SEQRES 17 B 347 ASP ILE THR HIS THR VAL LEU VAL THR GLU LYS VAL ILE SEQRES 18 B 347 ASN ASP ILE LYS ALA ALA THR GLU PRO TYR SER PRO LYS SEQRES 19 B 347 PHE THR GLU MET ILE ILE LYS LEU LEU PHE PHE PHE LYS SEQRES 20 B 347 ASP THR TYR ARG ASP VAL PHE GLY PHE ILE ASP PRO PRO SEQRES 21 B 347 LEU HIS ASP PRO VAL ALA ALA PHE HIS LEU ILE ALA PRO SEQRES 22 B 347 GLU TRP PHE GLU HIS VAL ARG CYS HIS VAL ASP ILE GLU SEQRES 23 B 347 THR LYS GLY GLU TYR THR TYR GLY CYS CYS CYS THR ASN SEQRES 24 B 347 LEU ILE LEU LYS LYS LYS ASP PRO THR LYS ILE VAL LYS SEQRES 25 B 347 PRO ASP ASN ALA THR VAL CYS LEU LYS LEU LYS GLU GLY SEQRES 26 B 347 GLY HIS ASP ALA PHE TRP ASN GLN MET ILE THR VAL TRP SEQRES 27 B 347 GLY GLU ILE ALA LYS GLU ILE GLY LYS SEQRES 1 C 347 MET SER ILE LYS CYS ALA LEU ASP CYS ASP PRO GLY HIS SEQRES 2 C 347 ASP ASP LEU ALA MET ILE MET LEU ALA VAL TYR SER PRO SEQRES 3 C 347 LYS LEU ASP VAL GLN TYR ILE SER THR THR HIS GLY ASN SEQRES 4 C 347 GLN THR VAL ASN LYS THR TYR GLN ASN ALA ARG ARG THR SEQRES 5 C 347 LEU ASN LEU ILE LYS ARG ALA ASP LYS ILE PRO VAL TYR SEQRES 6 C 347 ARG GLY TYR SER LYS PRO LEU THR ARG GLU SER VAL ALA SEQRES 7 C 347 CYS PRO GLU ILE HIS GLY GLU SER GLY LEU GLY GLY VAL SEQRES 8 C 347 ASP TRP SER GLU ILE ASP ARG THR MET PRO ARG ASN PRO SEQRES 9 C 347 ALA LEU ASP ILE LEU GLY TYR LYS ASP GLU SER GLU LEU SEQRES 10 C 347 ARG PRO ASP ASP PHE PHE LYS HIS LEU HIS ARG LEU VAL SEQRES 11 C 347 SER ALA ALA GLU ASP LYS PHE ASP ILE ILE SER THR GLY SEQRES 12 C 347 SER GLU THR ASN ILE ALA GLN TYR LEU LEU ALA TYR PRO SEQRES 13 C 347 GLU ASP ALA LYS LYS ILE ARG MET THR THR MET ALA GLY SEQRES 14 C 347 ASN PHE MET ILE VAL GLY ASN ILE MET PRO PHE ALA GLU SEQRES 15 C 347 PHE ASN VAL LEU ILE ASP PRO GLU ALA ILE SER ASN ILE SEQRES 16 C 347 LEU GLN SER GLY VAL ASP TYR THR PHE ALA ALA PRO LEU SEQRES 17 C 347 ASP ILE THR HIS THR VAL LEU VAL THR GLU LYS VAL ILE SEQRES 18 C 347 ASN ASP ILE LYS ALA ALA THR GLU PRO TYR SER PRO LYS SEQRES 19 C 347 PHE THR GLU MET ILE ILE LYS LEU LEU PHE PHE PHE LYS SEQRES 20 C 347 ASP THR TYR ARG ASP VAL PHE GLY PHE ILE ASP PRO PRO SEQRES 21 C 347 LEU HIS ASP PRO VAL ALA ALA PHE HIS LEU ILE ALA PRO SEQRES 22 C 347 GLU TRP PHE GLU HIS VAL ARG CYS HIS VAL ASP ILE GLU SEQRES 23 C 347 THR LYS GLY GLU TYR THR TYR GLY CYS CYS CYS THR ASN SEQRES 24 C 347 LEU ILE LEU LYS LYS LYS ASP PRO THR LYS ILE VAL LYS SEQRES 25 C 347 PRO ASP ASN ALA THR VAL CYS LEU LYS LEU LYS GLU GLY SEQRES 26 C 347 GLY HIS ASP ALA PHE TRP ASN GLN MET ILE THR VAL TRP SEQRES 27 C 347 GLY GLU ILE ALA LYS GLU ILE GLY LYS SEQRES 1 D 347 MET SER ILE LYS CYS ALA LEU ASP CYS ASP PRO GLY HIS SEQRES 2 D 347 ASP ASP LEU ALA MET ILE MET LEU ALA VAL TYR SER PRO SEQRES 3 D 347 LYS LEU ASP VAL GLN TYR ILE SER THR THR HIS GLY ASN SEQRES 4 D 347 GLN THR VAL ASN LYS THR TYR GLN ASN ALA ARG ARG THR SEQRES 5 D 347 LEU ASN LEU ILE LYS ARG ALA ASP LYS ILE PRO VAL TYR SEQRES 6 D 347 ARG GLY TYR SER LYS PRO LEU THR ARG GLU SER VAL ALA SEQRES 7 D 347 CYS PRO GLU ILE HIS GLY GLU SER GLY LEU GLY GLY VAL SEQRES 8 D 347 ASP TRP SER GLU ILE ASP ARG THR MET PRO ARG ASN PRO SEQRES 9 D 347 ALA LEU ASP ILE LEU GLY TYR LYS ASP GLU SER GLU LEU SEQRES 10 D 347 ARG PRO ASP ASP PHE PHE LYS HIS LEU HIS ARG LEU VAL SEQRES 11 D 347 SER ALA ALA GLU ASP LYS PHE ASP ILE ILE SER THR GLY SEQRES 12 D 347 SER GLU THR ASN ILE ALA GLN TYR LEU LEU ALA TYR PRO SEQRES 13 D 347 GLU ASP ALA LYS LYS ILE ARG MET THR THR MET ALA GLY SEQRES 14 D 347 ASN PHE MET ILE VAL GLY ASN ILE MET PRO PHE ALA GLU SEQRES 15 D 347 PHE ASN VAL LEU ILE ASP PRO GLU ALA ILE SER ASN ILE SEQRES 16 D 347 LEU GLN SER GLY VAL ASP TYR THR PHE ALA ALA PRO LEU SEQRES 17 D 347 ASP ILE THR HIS THR VAL LEU VAL THR GLU LYS VAL ILE SEQRES 18 D 347 ASN ASP ILE LYS ALA ALA THR GLU PRO TYR SER PRO LYS SEQRES 19 D 347 PHE THR GLU MET ILE ILE LYS LEU LEU PHE PHE PHE LYS SEQRES 20 D 347 ASP THR TYR ARG ASP VAL PHE GLY PHE ILE ASP PRO PRO SEQRES 21 D 347 LEU HIS ASP PRO VAL ALA ALA PHE HIS LEU ILE ALA PRO SEQRES 22 D 347 GLU TRP PHE GLU HIS VAL ARG CYS HIS VAL ASP ILE GLU SEQRES 23 D 347 THR LYS GLY GLU TYR THR TYR GLY CYS CYS CYS THR ASN SEQRES 24 D 347 LEU ILE LEU LYS LYS LYS ASP PRO THR LYS ILE VAL LYS SEQRES 25 D 347 PRO ASP ASN ALA THR VAL CYS LEU LYS LEU LYS GLU GLY SEQRES 26 D 347 GLY HIS ASP ALA PHE TRP ASN GLN MET ILE THR VAL TRP SEQRES 27 D 347 GLY GLU ILE ALA LYS GLU ILE GLY LYS HET CA A 401 1 HET RIB A 402 10 HET GOL A 403 6 HET CA B 401 1 HET RIB B 402 10 HET GOL B 403 6 HET CA C 401 1 HET RIB C 402 10 HET PGE C 403 10 HET GOL C 404 6 HET CA D 401 1 HET RIB D 402 10 HETNAM CA CALCIUM ION HETNAM RIB ALPHA-D-RIBOFURANOSE HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN RIB ALPHA-D-RIBOSE; D-RIBOSE; RIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CA 4(CA 2+) FORMUL 6 RIB 4(C5 H10 O5) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 13 PGE C6 H14 O4 FORMUL 17 HOH *108(H2 O) HELIX 1 AA1 GLY A 12 SER A 25 1 14 HELIX 2 AA2 THR A 41 ILE A 56 1 16 HELIX 3 AA3 TRP A 93 THR A 99 1 7 HELIX 4 AA4 ASN A 103 GLY A 110 1 8 HELIX 5 AA5 ASP A 113 LEU A 117 5 5 HELIX 6 AA6 PHE A 122 ALA A 133 1 12 HELIX 7 AA7 GLU A 145 TYR A 155 1 11 HELIX 8 AA8 PRO A 156 LYS A 160 5 5 HELIX 9 AA9 GLU A 182 ILE A 187 1 6 HELIX 10 AB1 ASP A 188 SER A 198 1 11 HELIX 11 AB2 PRO A 207 HIS A 212 1 6 HELIX 12 AB3 THR A 217 GLU A 229 1 13 HELIX 13 AB4 SER A 232 PHE A 245 1 14 HELIX 14 AB5 PHE A 246 VAL A 253 1 8 HELIX 15 AB6 ASP A 263 ALA A 272 1 10 HELIX 16 AB7 PRO A 273 PHE A 276 5 4 HELIX 17 AB8 GLY A 325 GLY A 346 1 22 HELIX 18 AB9 GLY B 12 SER B 25 1 14 HELIX 19 AC1 THR B 41 ILE B 56 1 16 HELIX 20 AC2 CYS B 79 GLY B 84 1 6 HELIX 21 AC3 TRP B 93 THR B 99 1 7 HELIX 22 AC4 ASN B 103 GLY B 110 1 8 HELIX 23 AC5 ASP B 113 LEU B 117 5 5 HELIX 24 AC6 PHE B 122 ALA B 133 1 12 HELIX 25 AC7 GLU B 145 TYR B 155 1 11 HELIX 26 AC8 PRO B 156 LYS B 160 5 5 HELIX 27 AC9 GLU B 182 ILE B 187 1 6 HELIX 28 AD1 ASP B 188 SER B 198 1 11 HELIX 29 AD2 PRO B 207 HIS B 212 1 6 HELIX 30 AD3 THR B 217 GLU B 229 1 13 HELIX 31 AD4 SER B 232 GLY B 255 1 24 HELIX 32 AD5 ASP B 263 ALA B 272 1 10 HELIX 33 AD6 PRO B 273 PHE B 276 5 4 HELIX 34 AD7 ASN B 299 ASP B 306 1 8 HELIX 35 AD8 PRO B 307 ILE B 310 5 4 HELIX 36 AD9 GLY B 325 GLY B 346 1 22 HELIX 37 AE1 GLY C 12 SER C 25 1 14 HELIX 38 AE2 THR C 41 ILE C 56 1 16 HELIX 39 AE3 CYS C 79 GLY C 84 1 6 HELIX 40 AE4 TRP C 93 THR C 99 1 7 HELIX 41 AE5 ASN C 103 GLY C 110 1 8 HELIX 42 AE6 ASP C 113 LEU C 117 5 5 HELIX 43 AE7 PHE C 122 ALA C 133 1 12 HELIX 44 AE8 GLU C 145 TYR C 155 1 11 HELIX 45 AE9 PRO C 156 LYS C 160 5 5 HELIX 46 AF1 GLU C 182 ILE C 187 1 6 HELIX 47 AF2 ASP C 188 SER C 198 1 11 HELIX 48 AF3 PRO C 207 HIS C 212 1 6 HELIX 49 AF4 THR C 217 GLU C 229 1 13 HELIX 50 AF5 SER C 232 GLY C 255 1 24 HELIX 51 AF6 ASP C 263 ALA C 272 1 10 HELIX 52 AF7 PRO C 273 PHE C 276 5 4 HELIX 53 AF8 ASN C 299 ASP C 306 1 8 HELIX 54 AF9 PRO C 307 ILE C 310 5 4 HELIX 55 AG1 GLY C 325 GLY C 346 1 22 HELIX 56 AG2 GLY D 12 SER D 25 1 14 HELIX 57 AG3 THR D 41 ILE D 56 1 16 HELIX 58 AG4 TRP D 93 THR D 99 1 7 HELIX 59 AG5 ASN D 103 GLY D 110 1 8 HELIX 60 AG6 ASP D 113 LEU D 117 5 5 HELIX 61 AG7 PHE D 122 ALA D 133 1 12 HELIX 62 AG8 GLU D 145 TYR D 155 1 11 HELIX 63 AG9 PRO D 156 LYS D 160 5 5 HELIX 64 AH1 GLU D 182 ILE D 187 1 6 HELIX 65 AH2 ASP D 188 SER D 198 1 11 HELIX 66 AH3 PRO D 207 HIS D 212 1 6 HELIX 67 AH4 THR D 217 GLU D 229 1 13 HELIX 68 AH5 SER D 232 PHE D 245 1 14 HELIX 69 AH6 PHE D 246 VAL D 253 1 8 HELIX 70 AH7 ASP D 263 ALA D 272 1 10 HELIX 71 AH8 PRO D 273 PHE D 276 5 4 HELIX 72 AH9 GLY D 325 GLY D 346 1 22 SHEET 1 AA1 8 VAL A 64 ARG A 66 0 SHEET 2 AA1 8 LEU A 28 THR A 35 1 N ILE A 33 O TYR A 65 SHEET 3 AA1 8 ILE A 3 CYS A 9 1 N ILE A 3 O ASP A 29 SHEET 4 AA1 8 PHE A 137 SER A 141 1 O ILE A 140 N ASP A 8 SHEET 5 AA1 8 ILE A 162 THR A 166 1 O ARG A 163 N ILE A 139 SHEET 6 AA1 8 ASP A 201 PHE A 204 1 O ASP A 201 N MET A 164 SHEET 7 AA1 8 ALA A 316 VAL A 318 1 O THR A 317 N PHE A 204 SHEET 8 AA1 8 VAL A 279 CYS A 281 -1 N VAL A 279 O VAL A 318 SHEET 1 AA2 2 ASP A 284 ILE A 285 0 SHEET 2 AA2 2 CYS A 296 CYS A 297 -1 O CYS A 297 N ASP A 284 SHEET 1 AA3 8 VAL B 64 ARG B 66 0 SHEET 2 AA3 8 LEU B 28 THR B 35 1 N ILE B 33 O TYR B 65 SHEET 3 AA3 8 ILE B 3 CYS B 9 1 N ILE B 3 O ASP B 29 SHEET 4 AA3 8 PHE B 137 SER B 141 1 O ILE B 140 N ASP B 8 SHEET 5 AA3 8 ILE B 162 THR B 166 1 O ARG B 163 N ILE B 139 SHEET 6 AA3 8 ASP B 201 PHE B 204 1 O ASP B 201 N MET B 164 SHEET 7 AA3 8 ALA B 316 VAL B 318 1 O THR B 317 N PHE B 204 SHEET 8 AA3 8 VAL B 279 CYS B 281 -1 N VAL B 279 O VAL B 318 SHEET 1 AA4 2 VAL B 283 ILE B 285 0 SHEET 2 AA4 2 CYS B 296 THR B 298 -1 O CYS B 297 N ASP B 284 SHEET 1 AA5 8 VAL C 64 ARG C 66 0 SHEET 2 AA5 8 LEU C 28 THR C 35 1 N ILE C 33 O TYR C 65 SHEET 3 AA5 8 ILE C 3 CYS C 9 1 N ILE C 3 O ASP C 29 SHEET 4 AA5 8 PHE C 137 SER C 141 1 O ILE C 140 N ASP C 8 SHEET 5 AA5 8 ILE C 162 THR C 166 1 O ARG C 163 N ILE C 139 SHEET 6 AA5 8 ASP C 201 PHE C 204 1 O ASP C 201 N MET C 164 SHEET 7 AA5 8 ALA C 316 VAL C 318 1 O THR C 317 N PHE C 204 SHEET 8 AA5 8 VAL C 279 CYS C 281 -1 N VAL C 279 O VAL C 318 SHEET 1 AA6 2 VAL C 283 ILE C 285 0 SHEET 2 AA6 2 CYS C 296 THR C 298 -1 O CYS C 297 N ASP C 284 SHEET 1 AA7 8 VAL D 64 ARG D 66 0 SHEET 2 AA7 8 LEU D 28 THR D 35 1 N ILE D 33 O TYR D 65 SHEET 3 AA7 8 ILE D 3 CYS D 9 1 N ILE D 3 O ASP D 29 SHEET 4 AA7 8 PHE D 137 SER D 141 1 O ILE D 140 N ASP D 8 SHEET 5 AA7 8 ILE D 162 THR D 166 1 O ARG D 163 N ILE D 139 SHEET 6 AA7 8 ASP D 201 PHE D 204 1 O ASP D 201 N MET D 164 SHEET 7 AA7 8 ALA D 316 VAL D 318 1 O THR D 317 N PHE D 204 SHEET 8 AA7 8 VAL D 279 CYS D 281 -1 N VAL D 279 O VAL D 318 SHEET 1 AA8 2 ASP D 284 ILE D 285 0 SHEET 2 AA8 2 CYS D 296 CYS D 297 -1 O CYS D 297 N ASP D 284 LINK OD1 ASP A 10 CA CA A 401 1555 1555 2.40 LINK OD1 ASP A 15 CA CA A 401 1555 1555 2.45 LINK OD2 ASP A 15 CA CA A 401 1555 1555 2.46 LINK O THR A 142 CA CA A 401 1555 1555 2.39 LINK OD2 ASP A 263 CA CA A 401 1555 1555 2.45 LINK CA CA A 401 O2 RIB A 402 1555 1555 2.42 LINK CA CA A 401 O3 RIB A 402 1555 1555 2.45 LINK CA CA A 401 O HOH A 505 1555 1555 2.72 LINK OD1 ASP B 10 CA CA B 401 1555 1555 2.42 LINK OD1 ASP B 15 CA CA B 401 1555 1555 2.41 LINK OD2 ASP B 15 CA CA B 401 1555 1555 2.48 LINK O THR B 142 CA CA B 401 1555 1555 2.41 LINK OD2 ASP B 263 CA CA B 401 1555 1555 2.42 LINK CA CA B 401 O3 RIB B 402 1555 1555 2.34 LINK CA CA B 401 O2 RIB B 402 1555 1555 2.63 LINK CA CA B 401 O HOH B 519 1555 1555 2.28 LINK OD1 ASP C 10 CA CA C 401 1555 1555 2.39 LINK OD1 ASP C 15 CA CA C 401 1555 1555 2.42 LINK OD2 ASP C 15 CA CA C 401 1555 1555 2.47 LINK O THR C 142 CA CA C 401 1555 1555 2.39 LINK OD2 ASP C 263 CA CA C 401 1555 1555 2.43 LINK CA CA C 401 O3 RIB C 402 1555 1555 2.42 LINK CA CA C 401 O2 RIB C 402 1555 1555 2.47 LINK CA CA C 401 O HOH C 518 1555 1555 2.45 LINK OD1 ASP D 10 CA CA D 401 1555 1555 2.43 LINK OD1 ASP D 15 CA CA D 401 1555 1555 2.44 LINK OD2 ASP D 15 CA CA D 401 1555 1555 2.46 LINK O THR D 142 CA CA D 401 1555 1555 2.38 LINK OD2 ASP D 263 CA CA D 401 1555 1555 2.40 LINK CA CA D 401 O2 RIB D 402 1555 1555 2.41 LINK CA CA D 401 O3 RIB D 402 1555 1555 2.43 LINK CA CA D 401 O HOH D 509 1555 1555 2.56 CISPEP 1 PRO A 11 GLY A 12 0 -13.01 CISPEP 2 PRO B 11 GLY B 12 0 -12.09 CISPEP 3 PRO C 11 GLY C 12 0 -12.98 CISPEP 4 PRO D 11 GLY D 12 0 -13.12 CRYST1 116.995 135.622 94.075 90.00 104.69 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008547 0.000000 0.002241 0.00000 SCALE2 0.000000 0.007373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010989 0.00000