HEADER TRANSFERASE 24-MAR-23 8OJA TITLE HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN EXONUCLEASE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7,3.1.26.4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DNA-BINDING PROTEIN UL42,POLYMERASE ACCESSORY PROTEIN,PAP; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (47-MER); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (68-MER); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN KOS; SOURCE 3 ORGANISM_TAXID: 10306; SOURCE 4 GENE: UL30; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN KOS; SOURCE 10 ORGANISM_TAXID: 10306; SOURCE 11 GENE: UL42; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS DNA, POLYMERASE, COMPLEX, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR E.GUSTAVSSON,K.GRUNEWALD,P.ELIAS,B.M.HALLBERG REVDAT 1 03-APR-24 8OJA 0 JRNL AUTH E.GUSTAVSSON,K.GRUNEWALD,P.ELIAS,B.M.HALLBERG JRNL TITL DYNAMICS OF THE HERPES SIMPLEX VIRUS DNA POLYMERASE JRNL TITL 2 HOLOENZYME DURING DNA SYNTHESIS AND PROOF-READING REVEALED JRNL TITL 3 BY CRYO-EM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CTFFIND, UCSF CHIMERAX, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7LUF REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 1.870 REMARK 3 NUMBER OF PARTICLES : 539028 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8OJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292129370. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HSV-1 DNA POLYMERASE REMARK 245 -PROCESSIVITY FACTOR COMPLEX IN REMARK 245 EXONUCLEASE STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.40 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 PHE A 23 REMARK 465 PHE A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 PRO A 29 REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 PRO A 38 REMARK 465 CYS A 39 REMARK 465 LEU A 40 REMARK 465 ARG A 41 REMARK 465 GLN A 42 REMARK 465 ASN A 43 REMARK 465 PHE A 44 REMARK 465 TYR A 45 REMARK 465 ASN A 46 REMARK 465 PRO A 47 REMARK 465 TYR A 48 REMARK 465 LEU A 49 REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 VAL A 52 REMARK 465 GLY A 53 REMARK 465 THR A 54 REMARK 465 GLN A 55 REMARK 465 GLN A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 GLY A 505 REMARK 465 GLN A 506 REMARK 465 SER A 507 REMARK 465 HIS A 508 REMARK 465 PHE A 509 REMARK 465 GLN A 510 REMARK 465 LYS A 511 REMARK 465 GLN A 640 REMARK 465 GLY A 641 REMARK 465 ARG A 642 REMARK 465 PHE A 643 REMARK 465 ARG A 644 REMARK 465 GLY A 645 REMARK 465 ALA A 646 REMARK 465 GLY A 647 REMARK 465 GLY A 648 REMARK 465 GLU A 649 REMARK 465 ALA A 650 REMARK 465 PRO A 651 REMARK 465 LYS A 652 REMARK 465 ARG A 653 REMARK 465 PRO A 654 REMARK 465 ALA A 655 REMARK 465 ALA A 656 REMARK 465 ALA A 657 REMARK 465 ARG A 658 REMARK 465 GLU A 659 REMARK 465 ASP A 660 REMARK 465 GLU A 661 REMARK 465 GLU A 662 REMARK 465 ARG A 663 REMARK 465 PRO A 664 REMARK 465 GLU A 665 REMARK 465 GLU A 666 REMARK 465 GLU A 667 REMARK 465 GLY A 668 REMARK 465 GLU A 669 REMARK 465 ASP A 670 REMARK 465 GLU A 671 REMARK 465 ASP A 672 REMARK 465 GLU A 673 REMARK 465 ARG A 674 REMARK 465 GLU A 675 REMARK 465 GLU A 676 REMARK 465 GLY A 677 REMARK 465 GLY A 678 REMARK 465 GLY A 679 REMARK 465 GLU A 680 REMARK 465 ARG A 681 REMARK 465 GLU A 682 REMARK 465 PRO A 683 REMARK 465 GLU A 684 REMARK 465 GLY A 685 REMARK 465 ALA A 686 REMARK 465 ARG A 687 REMARK 465 GLU A 688 REMARK 465 THR A 689 REMARK 465 ALA A 690 REMARK 465 GLY A 691 REMARK 465 ARG A 692 REMARK 465 HIS A 693 REMARK 465 VAL A 694 REMARK 465 GLY A 695 REMARK 465 TYR A 696 REMARK 465 GLN A 697 REMARK 465 GLY A 698 REMARK 465 ALA A 699 REMARK 465 GLU A 1095 REMARK 465 LEU A 1096 REMARK 465 ASP A 1097 REMARK 465 ALA A 1098 REMARK 465 ALA A 1099 REMARK 465 ALA A 1100 REMARK 465 PRO A 1101 REMARK 465 GLY A 1102 REMARK 465 ASP A 1103 REMARK 465 GLU A 1104 REMARK 465 PRO A 1105 REMARK 465 ALA A 1106 REMARK 465 PRO A 1107 REMARK 465 PRO A 1108 REMARK 465 ALA A 1109 REMARK 465 ALA A 1110 REMARK 465 LEU A 1111 REMARK 465 PRO A 1112 REMARK 465 SER A 1113 REMARK 465 PRO A 1114 REMARK 465 ALA A 1115 REMARK 465 LYS A 1116 REMARK 465 ARG A 1117 REMARK 465 PRO A 1118 REMARK 465 ARG A 1119 REMARK 465 GLU A 1120 REMARK 465 THR A 1121 REMARK 465 PRO A 1122 REMARK 465 SER A 1123 REMARK 465 PRO A 1124 REMARK 465 ALA A 1125 REMARK 465 ASP A 1126 REMARK 465 PRO A 1127 REMARK 465 PRO A 1128 REMARK 465 GLY A 1129 REMARK 465 GLY A 1130 REMARK 465 ALA A 1131 REMARK 465 SER A 1132 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 ASP B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 GLY B 227 REMARK 465 VAL B 228 REMARK 465 SER B 229 REMARK 465 SER B 230 REMARK 465 SER B 231 REMARK 465 THR B 232 REMARK 465 SER B 233 REMARK 465 THR B 234 REMARK 465 GLN B 235 REMARK 465 VAL B 236 REMARK 465 GLN B 237 REMARK 465 ILE B 238 REMARK 465 LEU B 239 REMARK 465 SER B 240 REMARK 465 ASN B 241 REMARK 465 ALA B 242 REMARK 465 LEU B 243 REMARK 465 THR B 244 REMARK 465 LYS B 245 REMARK 465 ALA B 246 REMARK 465 GLY B 247 REMARK 465 GLN B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 LYS B 319 REMARK 465 ILE B 320 REMARK 465 CYS B 321 REMARK 465 LEU B 322 REMARK 465 ASP B 323 REMARK 465 TRP B 324 REMARK 465 LEU B 325 REMARK 465 GLY B 326 REMARK 465 HIS B 327 REMARK 465 SER B 328 REMARK 465 GLN B 329 REMARK 465 GLY B 330 REMARK 465 SER B 331 REMARK 465 PRO B 332 REMARK 465 SER B 333 REMARK 465 ALA B 334 REMARK 465 GLY B 335 REMARK 465 SER B 336 REMARK 465 SER B 337 REMARK 465 ALA B 338 REMARK 465 SER B 339 REMARK 465 ARG B 340 REMARK 465 ALA B 341 REMARK 465 SER B 342 REMARK 465 GLY B 343 REMARK 465 SER B 344 REMARK 465 GLU B 345 REMARK 465 PRO B 346 REMARK 465 THR B 347 REMARK 465 ASP B 348 REMARK 465 SER B 349 REMARK 465 GLN B 350 REMARK 465 ASP B 351 REMARK 465 SER B 352 REMARK 465 ALA B 353 REMARK 465 SER B 354 REMARK 465 ASP B 355 REMARK 465 ALA B 356 REMARK 465 VAL B 357 REMARK 465 SER B 358 REMARK 465 HIS B 359 REMARK 465 GLY B 360 REMARK 465 ASP B 361 REMARK 465 PRO B 362 REMARK 465 GLU B 363 REMARK 465 ASP B 364 REMARK 465 LEU B 365 REMARK 465 ASP B 366 REMARK 465 GLY B 367 REMARK 465 ALA B 368 REMARK 465 ALA B 369 REMARK 465 ARG B 370 REMARK 465 ALA B 371 REMARK 465 GLY B 372 REMARK 465 GLU B 373 REMARK 465 ALA B 374 REMARK 465 GLY B 375 REMARK 465 ALA B 376 REMARK 465 LEU B 377 REMARK 465 HIS B 378 REMARK 465 ALA B 379 REMARK 465 CYS B 380 REMARK 465 PRO B 381 REMARK 465 MET B 382 REMARK 465 PRO B 383 REMARK 465 SER B 384 REMARK 465 SER B 385 REMARK 465 THR B 386 REMARK 465 THR B 387 REMARK 465 ARG B 388 REMARK 465 VAL B 389 REMARK 465 THR B 390 REMARK 465 PRO B 391 REMARK 465 THR B 392 REMARK 465 THR B 393 REMARK 465 LYS B 394 REMARK 465 ARG B 395 REMARK 465 GLY B 396 REMARK 465 ARG B 397 REMARK 465 SER B 398 REMARK 465 GLY B 399 REMARK 465 GLY B 400 REMARK 465 GLU B 401 REMARK 465 ASP B 402 REMARK 465 ALA B 403 REMARK 465 ARG B 404 REMARK 465 ALA B 405 REMARK 465 ASP B 406 REMARK 465 THR B 407 REMARK 465 ALA B 408 REMARK 465 LEU B 409 REMARK 465 LYS B 410 REMARK 465 LYS B 411 REMARK 465 PRO B 412 REMARK 465 LYS B 413 REMARK 465 THR B 414 REMARK 465 GLY B 415 REMARK 465 SER B 416 REMARK 465 PRO B 417 REMARK 465 THR B 418 REMARK 465 ALA B 419 REMARK 465 PRO B 420 REMARK 465 PRO B 421 REMARK 465 PRO B 422 REMARK 465 ALA B 423 REMARK 465 ASP B 424 REMARK 465 PRO B 425 REMARK 465 VAL B 426 REMARK 465 PRO B 427 REMARK 465 LEU B 428 REMARK 465 ASP B 429 REMARK 465 THR B 430 REMARK 465 GLU B 431 REMARK 465 ASP B 432 REMARK 465 ASP B 433 REMARK 465 SER B 434 REMARK 465 ASP B 435 REMARK 465 ALA B 436 REMARK 465 ALA B 437 REMARK 465 ASP B 438 REMARK 465 GLY B 439 REMARK 465 THR B 440 REMARK 465 ALA B 441 REMARK 465 ALA B 442 REMARK 465 ARG B 443 REMARK 465 PRO B 444 REMARK 465 ALA B 445 REMARK 465 ALA B 446 REMARK 465 PRO B 447 REMARK 465 ASP B 448 REMARK 465 ALA B 449 REMARK 465 ARG B 450 REMARK 465 SER B 451 REMARK 465 GLY B 452 REMARK 465 SER B 453 REMARK 465 ARG B 454 REMARK 465 TYR B 455 REMARK 465 ALA B 456 REMARK 465 CYS B 457 REMARK 465 TYR B 458 REMARK 465 PHE B 459 REMARK 465 ARG B 460 REMARK 465 ASP B 461 REMARK 465 LEU B 462 REMARK 465 PRO B 463 REMARK 465 THR B 464 REMARK 465 GLY B 465 REMARK 465 GLU B 466 REMARK 465 ALA B 467 REMARK 465 SER B 468 REMARK 465 PRO B 469 REMARK 465 GLY B 470 REMARK 465 ALA B 471 REMARK 465 PHE B 472 REMARK 465 SER B 473 REMARK 465 ALA B 474 REMARK 465 PHE B 475 REMARK 465 ARG B 476 REMARK 465 GLY B 477 REMARK 465 GLY B 478 REMARK 465 PRO B 479 REMARK 465 GLN B 480 REMARK 465 THR B 481 REMARK 465 PRO B 482 REMARK 465 TYR B 483 REMARK 465 GLY B 484 REMARK 465 PHE B 485 REMARK 465 GLY B 486 REMARK 465 PHE B 487 REMARK 465 PRO B 488 REMARK 465 DG C -22 REMARK 465 DC C -21 REMARK 465 DC C -20 REMARK 465 DA C -19 REMARK 465 DC C -18 REMARK 465 DT C -17 REMARK 465 DA C -16 REMARK 465 DC C -15 REMARK 465 DG C -14 REMARK 465 DA C -13 REMARK 465 DC C -12 REMARK 465 DA C -11 REMARK 465 DC C -10 REMARK 465 DC C -9 REMARK 465 DT C -8 REMARK 465 DT C -7 REMARK 465 DG C -6 REMARK 465 DA C -5 REMARK 465 DA D -22 REMARK 465 DT D -21 REMARK 465 DT D -20 REMARK 465 DT D -19 REMARK 465 DG D -18 REMARK 465 DC D -17 REMARK 465 DT D -16 REMARK 465 DG D -15 REMARK 465 DA D -14 REMARK 465 DC D -13 REMARK 465 DC D -12 REMARK 465 DT D -11 REMARK 465 DT D -10 REMARK 465 DT D -9 REMARK 465 DG D -8 REMARK 465 DT D -7 REMARK 465 DT D -6 REMARK 465 DC D -5 REMARK 465 DT D -4 REMARK 465 DG D -3 REMARK 465 DG D -2 REMARK 465 DG D -1 REMARK 465 DG D 0 REMARK 465 DT D 1 REMARK 465 DG D 2 REMARK 465 DA D 3 REMARK 465 DT D 28 REMARK 465 DC D 29 REMARK 465 DA D 30 REMARK 465 DA D 31 REMARK 465 DG D 32 REMARK 465 DG D 33 REMARK 465 DT D 34 REMARK 465 DG D 35 REMARK 465 DT D 36 REMARK 465 DC D 37 REMARK 465 DG D 38 REMARK 465 DT D 39 REMARK 465 DA D 40 REMARK 465 DG D 41 REMARK 465 DT D 42 REMARK 465 DG D 43 REMARK 465 DG D 44 REMARK 465 DC D 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 368 OD2 ASP A 581 1.76 REMARK 500 OD2 ASP A 581 O HOH A 1401 2.01 REMARK 500 OE2 GLU A 370 O HOH A 1402 2.03 REMARK 500 O3' DA C 23 O HOH C 101 2.08 REMARK 500 OE1 GLU A 370 O5' AS C 24 2.09 REMARK 500 CE LYS A 552 CD1 LEU A 584 2.10 REMARK 500 O HOH A 1538 O HOH C 101 2.13 REMARK 500 OD2 ASP A 368 O HOH A 1403 2.14 REMARK 500 O HOH A 1406 O HOH A 1538 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA C 22 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA C 23 C3' - O3' - P ANGL. DEV. = -12.4 DEGREES REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 16 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DC D 17 O3' - P - O5' ANGL. DEV. = 13.1 DEGREES REMARK 500 DC D 17 O3' - P - OP2 ANGL. DEV. = 16.0 DEGREES REMARK 500 DC D 17 O3' - P - OP1 ANGL. DEV. = -43.0 DEGREES REMARK 500 DC D 17 O5' - P - OP1 ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 100 77.67 -101.73 REMARK 500 ARG A 128 -62.30 -99.56 REMARK 500 ASN A 141 66.03 -158.99 REMARK 500 GLN A 166 45.34 -97.04 REMARK 500 TYR A 260 144.77 82.46 REMARK 500 ASN A 285 -32.21 -154.64 REMARK 500 CYS A 287 64.22 33.74 REMARK 500 ASN A 323 40.03 -84.93 REMARK 500 SER A 357 -24.96 -143.53 REMARK 500 PHE A 470 -69.30 -124.02 REMARK 500 PHE A 499 86.69 -153.13 REMARK 500 LYS A 532 -33.07 -131.03 REMARK 500 SER A 720 65.53 38.47 REMARK 500 ASP A 886 -141.81 -97.40 REMARK 500 ASP A 888 6.11 -152.40 REMARK 500 PRO A1066 -167.66 -75.14 REMARK 500 ARG A1081 -45.32 74.14 REMARK 500 LYS A1136 83.50 12.97 REMARK 500 ALA A1216 -141.05 49.77 REMARK 500 ARG B 51 -125.15 55.91 REMARK 500 LYS B 105 -84.63 -127.62 REMARK 500 PRO B 132 47.36 -90.66 REMARK 500 THR B 293 49.46 -84.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 611 0.10 SIDE CHAIN REMARK 500 ARG A1039 0.11 SIDE CHAIN REMARK 500 ARG A1135 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 368 OD1 REMARK 620 2 TYR A 465 O 156.8 REMARK 620 3 ASP A 471 OD1 110.4 91.9 REMARK 620 4 ASP A 471 OD2 63.3 135.8 48.8 REMARK 620 5 HOH A1405 O 49.5 147.1 78.5 55.6 REMARK 620 6 HOH A1408 O 118.4 77.2 62.7 96.2 70.4 REMARK 620 7 HOH A1463 O 80.8 83.7 115.5 95.4 128.9 160.7 REMARK 620 8 HOH A1538 O 86.5 72.9 160.6 149.6 107.7 101.3 75.6 REMARK 620 9 HOH C 101 O 59.0 111.7 130.1 109.8 57.5 79.9 110.6 50.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 368 OD1 REMARK 620 2 ASP A 368 OD2 54.1 REMARK 620 3 ILE A 369 O 78.6 111.9 REMARK 620 4 GLU A 370 OE1 152.8 124.6 77.9 REMARK 620 5 GLU A 370 OE2 118.2 76.8 89.3 48.2 REMARK 620 6 HOH A1402 O 108.7 54.9 135.4 79.5 47.7 REMARK 620 7 HOH A1405 O 56.0 109.1 62.6 122.1 151.6 157.3 REMARK 620 8 DA C 23 O3' 99.4 118.9 114.2 102.6 139.4 108.0 63.2 REMARK 620 9 AS C 24 O5' 147.8 153.9 91.0 46.1 91.8 100.1 92.1 57.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8OJ6 RELATED DB: PDB REMARK 900 RELATED ID: EMD-16906 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-16909 RELATED DB: EMDB REMARK 900 HSV-1 DNA POLYMERASE-PROCESSIVITY FACTOR COMPLEX IN EXONUCLEASE REMARK 900 STATE REMARK 900 RELATED ID: EMD-16927 RELATED DB: EMDB REMARK 900 FOCUSED REFINEMENT REMARK 900 RELATED ID: EMD-16928 RELATED DB: EMDB REMARK 900 FOCUSED REFINEMENT REMARK 900 RELATED ID: EMD-17018 RELATED DB: EMDB REMARK 900 CONSENSUS MAP DBREF 8OJA A 1 1235 UNP P04293 DPOL_HHV11 1 1235 DBREF 8OJA B 1 488 UNP P10226 PAP_HHV11 1 488 DBREF 8OJA C -22 24 PDB 8OJA 8OJA -22 24 DBREF 8OJA D -22 45 PDB 8OJA 8OJA -22 45 SEQADV 8OJA ARG A 330 UNP P04293 ALA 330 VARIANT SEQRES 1 A 1235 MET PHE SER GLY GLY GLY GLY PRO LEU SER PRO GLY GLY SEQRES 2 A 1235 LYS SER ALA ALA ARG ALA ALA SER GLY PHE PHE ALA PRO SEQRES 3 A 1235 ALA GLY PRO ARG GLY ALA SER ARG GLY PRO PRO PRO CYS SEQRES 4 A 1235 LEU ARG GLN ASN PHE TYR ASN PRO TYR LEU ALA PRO VAL SEQRES 5 A 1235 GLY THR GLN GLN LYS PRO THR GLY PRO THR GLN ARG HIS SEQRES 6 A 1235 THR TYR TYR SER GLU CYS ASP GLU PHE ARG PHE ILE ALA SEQRES 7 A 1235 PRO ARG VAL LEU ASP GLU ASP ALA PRO PRO GLU LYS ARG SEQRES 8 A 1235 ALA GLY VAL HIS ASP GLY HIS LEU LYS ARG ALA PRO LYS SEQRES 9 A 1235 VAL TYR CYS GLY GLY ASP GLU ARG ASP VAL LEU ARG VAL SEQRES 10 A 1235 GLY SER GLY GLY PHE TRP PRO ARG ARG SER ARG LEU TRP SEQRES 11 A 1235 GLY GLY VAL ASP HIS ALA PRO ALA GLY PHE ASN PRO THR SEQRES 12 A 1235 VAL THR VAL PHE HIS VAL TYR ASP ILE LEU GLU ASN VAL SEQRES 13 A 1235 GLU HIS ALA TYR GLY MET ARG ALA ALA GLN PHE HIS ALA SEQRES 14 A 1235 ARG PHE MET ASP ALA ILE THR PRO THR GLY THR VAL ILE SEQRES 15 A 1235 THR LEU LEU GLY LEU THR PRO GLU GLY HIS ARG VAL ALA SEQRES 16 A 1235 VAL HIS VAL TYR GLY THR ARG GLN TYR PHE TYR MET ASN SEQRES 17 A 1235 LYS GLU GLU VAL ASP ARG HIS LEU GLN CYS ARG ALA PRO SEQRES 18 A 1235 ARG ASP LEU CYS GLU ARG MET ALA ALA ALA LEU ARG GLU SEQRES 19 A 1235 SER PRO GLY ALA SER PHE ARG GLY ILE SER ALA ASP HIS SEQRES 20 A 1235 PHE GLU ALA GLU VAL VAL GLU ARG THR ASP VAL TYR TYR SEQRES 21 A 1235 TYR GLU THR ARG PRO ALA LEU PHE TYR ARG VAL TYR VAL SEQRES 22 A 1235 ARG SER GLY ARG VAL LEU SER TYR LEU CYS ASP ASN PHE SEQRES 23 A 1235 CYS PRO ALA ILE LYS LYS TYR GLU GLY GLY VAL ASP ALA SEQRES 24 A 1235 THR THR ARG PHE ILE LEU ASP ASN PRO GLY PHE VAL THR SEQRES 25 A 1235 PHE GLY TRP TYR ARG LEU LYS PRO GLY ARG ASN ASN THR SEQRES 26 A 1235 LEU ALA GLN PRO ARG ALA PRO MET ALA PHE GLY THR SER SEQRES 27 A 1235 SER ASP VAL GLU PHE ASN CYS THR ALA ASP ASN LEU ALA SEQRES 28 A 1235 ILE GLU GLY GLY MET SER ASP LEU PRO ALA TYR LYS LEU SEQRES 29 A 1235 MET CYS PHE ASP ILE GLU CYS LYS ALA GLY GLY GLU ASP SEQRES 30 A 1235 GLU LEU ALA PHE PRO VAL ALA GLY HIS PRO GLU ASP LEU SEQRES 31 A 1235 VAL ILE GLN ILE SER CYS LEU LEU TYR ASP LEU SER THR SEQRES 32 A 1235 THR ALA LEU GLU HIS VAL LEU LEU PHE SER LEU GLY SER SEQRES 33 A 1235 CYS ASP LEU PRO GLU SER HIS LEU ASN GLU LEU ALA ALA SEQRES 34 A 1235 ARG GLY LEU PRO THR PRO VAL VAL LEU GLU PHE ASP SER SEQRES 35 A 1235 GLU PHE GLU MET LEU LEU ALA PHE MET THR LEU VAL LYS SEQRES 36 A 1235 GLN TYR GLY PRO GLU PHE VAL THR GLY TYR ASN ILE ILE SEQRES 37 A 1235 ASN PHE ASP TRP PRO PHE LEU LEU ALA LYS LEU THR ASP SEQRES 38 A 1235 ILE TYR LYS VAL PRO LEU ASP GLY TYR GLY ARG MET ASN SEQRES 39 A 1235 GLY ARG GLY VAL PHE ARG VAL TRP ASP ILE GLY GLN SER SEQRES 40 A 1235 HIS PHE GLN LYS ARG SER LYS ILE LYS VAL ASN GLY MET SEQRES 41 A 1235 VAL ASN ILE ASP MET TYR GLY ILE ILE THR ASP LYS ILE SEQRES 42 A 1235 LYS LEU SER SER TYR LYS LEU ASN ALA VAL ALA GLU ALA SEQRES 43 A 1235 VAL LEU LYS ASP LYS LYS LYS ASP LEU SER TYR ARG ASP SEQRES 44 A 1235 ILE PRO ALA TYR TYR ALA ALA GLY PRO ALA GLN ARG GLY SEQRES 45 A 1235 VAL ILE GLY GLU TYR CYS ILE GLN ASP SER LEU LEU VAL SEQRES 46 A 1235 GLY GLN LEU PHE PHE LYS PHE LEU PRO HIS LEU GLU LEU SEQRES 47 A 1235 SER ALA VAL ALA ARG LEU ALA GLY ILE ASN ILE THR ARG SEQRES 48 A 1235 THR ILE TYR ASP GLY GLN GLN ILE ARG VAL PHE THR CYS SEQRES 49 A 1235 LEU LEU ARG LEU ALA ASP GLN LYS GLY PHE ILE LEU PRO SEQRES 50 A 1235 ASP THR GLN GLY ARG PHE ARG GLY ALA GLY GLY GLU ALA SEQRES 51 A 1235 PRO LYS ARG PRO ALA ALA ALA ARG GLU ASP GLU GLU ARG SEQRES 52 A 1235 PRO GLU GLU GLU GLY GLU ASP GLU ASP GLU ARG GLU GLU SEQRES 53 A 1235 GLY GLY GLY GLU ARG GLU PRO GLU GLY ALA ARG GLU THR SEQRES 54 A 1235 ALA GLY ARG HIS VAL GLY TYR GLN GLY ALA ARG VAL LEU SEQRES 55 A 1235 ASP PRO THR SER GLY PHE HIS VAL ASN PRO VAL VAL VAL SEQRES 56 A 1235 PHE ASP PHE ALA SER LEU TYR PRO SER ILE ILE GLN ALA SEQRES 57 A 1235 HIS ASN LEU CYS PHE SER THR LEU SER LEU ARG ALA ASP SEQRES 58 A 1235 ALA VAL ALA HIS LEU GLU ALA GLY LYS ASP TYR LEU GLU SEQRES 59 A 1235 ILE GLU VAL GLY GLY ARG ARG LEU PHE PHE VAL LYS ALA SEQRES 60 A 1235 HIS VAL ARG GLU SER LEU LEU SER ILE LEU LEU ARG ASP SEQRES 61 A 1235 TRP LEU ALA MET ARG LYS GLN ILE ARG SER ARG ILE PRO SEQRES 62 A 1235 GLN SER SER PRO GLU GLU ALA VAL LEU LEU ASP LYS GLN SEQRES 63 A 1235 GLN ALA ALA ILE LYS VAL VAL CYS ASN SER VAL TYR GLY SEQRES 64 A 1235 PHE THR GLY VAL GLN HIS GLY LEU LEU PRO CYS LEU HIS SEQRES 65 A 1235 VAL ALA ALA THR VAL THR THR ILE GLY ARG GLU MET LEU SEQRES 66 A 1235 LEU ALA THR ARG GLU TYR VAL HIS ALA ARG TRP ALA ALA SEQRES 67 A 1235 PHE GLU GLN LEU LEU ALA ASP PHE PRO GLU ALA ALA ASP SEQRES 68 A 1235 MET ARG ALA PRO GLY PRO TYR SER MET ARG ILE ILE TYR SEQRES 69 A 1235 GLY ASP THR ASP SER ILE PHE VAL LEU CYS ARG GLY LEU SEQRES 70 A 1235 THR ALA ALA GLY LEU THR ALA VAL GLY ASP LYS MET ALA SEQRES 71 A 1235 SER HIS ILE SER ARG ALA LEU PHE LEU PRO PRO ILE LYS SEQRES 72 A 1235 LEU GLU CYS GLU LYS THR PHE THR LYS LEU LEU LEU ILE SEQRES 73 A 1235 ALA LYS LYS LYS TYR ILE GLY VAL ILE TYR GLY GLY LYS SEQRES 74 A 1235 MET LEU ILE LYS GLY VAL ASP LEU VAL ARG LYS ASN ASN SEQRES 75 A 1235 CYS ALA PHE ILE ASN ARG THR SER ARG ALA LEU VAL ASP SEQRES 76 A 1235 LEU LEU PHE TYR ASP ASP THR VAL SER GLY ALA ALA ALA SEQRES 77 A 1235 ALA LEU ALA GLU ARG PRO ALA GLU GLU TRP LEU ALA ARG SEQRES 78 A 1235 PRO LEU PRO GLU GLY LEU GLN ALA PHE GLY ALA VAL LEU SEQRES 79 A 1235 VAL ASP ALA HIS ARG ARG ILE THR ASP PRO GLU ARG ASP SEQRES 80 A 1235 ILE GLN ASP PHE VAL LEU THR ALA GLU LEU SER ARG HIS SEQRES 81 A 1235 PRO ARG ALA TYR THR ASN LYS ARG LEU ALA HIS LEU THR SEQRES 82 A 1235 VAL TYR TYR LYS LEU MET ALA ARG ARG ALA GLN VAL PRO SEQRES 83 A 1235 SER ILE LYS ASP ARG ILE PRO TYR VAL ILE VAL ALA GLN SEQRES 84 A 1235 THR ARG GLU VAL GLU GLU THR VAL ALA ARG LEU ALA ALA SEQRES 85 A 1235 LEU ARG GLU LEU ASP ALA ALA ALA PRO GLY ASP GLU PRO SEQRES 86 A 1235 ALA PRO PRO ALA ALA LEU PRO SER PRO ALA LYS ARG PRO SEQRES 87 A 1235 ARG GLU THR PRO SER PRO ALA ASP PRO PRO GLY GLY ALA SEQRES 88 A 1235 SER LYS PRO ARG LYS LEU LEU VAL SER GLU LEU ALA GLU SEQRES 89 A 1235 ASP PRO ALA TYR ALA ILE ALA HIS GLY VAL ALA LEU ASN SEQRES 90 A 1235 THR ASP TYR TYR PHE SER HIS LEU LEU GLY ALA ALA CYS SEQRES 91 A 1235 VAL THR PHE LYS ALA LEU PHE GLY ASN ASN ALA LYS ILE SEQRES 92 A 1235 THR GLU SER LEU LEU LYS ARG PHE ILE PRO GLU VAL TRP SEQRES 93 A 1235 HIS PRO PRO ASP ASP VAL ALA ALA ARG LEU ARG THR ALA SEQRES 94 A 1235 GLY PHE GLY ALA VAL GLY ALA GLY ALA THR ALA GLU GLU SEQRES 95 A 1235 THR ARG ARG MET LEU HIS ARG ALA PHE ASP THR LEU ALA SEQRES 1 B 488 MET THR ASP SER PRO GLY GLY VAL ALA PRO ALA SER PRO SEQRES 2 B 488 VAL GLU ASP ALA SER ASP ALA SER LEU GLY GLN PRO GLU SEQRES 3 B 488 GLU GLY ALA PRO CYS GLN VAL VAL LEU GLN GLY ALA GLU SEQRES 4 B 488 LEU ASN GLY ILE LEU GLN ALA PHE ALA PRO LEU ARG THR SEQRES 5 B 488 SER LEU LEU ASP SER LEU LEU VAL MET GLY ASP ARG GLY SEQRES 6 B 488 ILE LEU ILE HIS ASN THR ILE PHE GLY GLU GLN VAL PHE SEQRES 7 B 488 LEU PRO LEU GLU HIS SER GLN PHE SER ARG TYR ARG TRP SEQRES 8 B 488 ARG GLY PRO THR ALA ALA PHE LEU SER LEU VAL ASP GLN SEQRES 9 B 488 LYS ARG SER LEU LEU SER VAL PHE ARG ALA ASN GLN TYR SEQRES 10 B 488 PRO ASP LEU ARG ARG VAL GLU LEU ALA ILE THR GLY GLN SEQRES 11 B 488 ALA PRO PHE ARG THR LEU VAL GLN ARG ILE TRP THR THR SEQRES 12 B 488 THR SER ASP GLY GLU ALA VAL GLU LEU ALA SER GLU THR SEQRES 13 B 488 LEU MET LYS ARG GLU LEU THR SER PHE VAL VAL LEU VAL SEQRES 14 B 488 PRO GLN GLY THR PRO ASP VAL GLN LEU ARG LEU THR ARG SEQRES 15 B 488 PRO GLN LEU THR LYS VAL LEU ASN ALA THR GLY ALA ASP SEQRES 16 B 488 SER ALA THR PRO THR THR PHE GLU LEU GLY VAL ASN GLY SEQRES 17 B 488 LYS PHE SER VAL PHE THR THR SER THR CYS VAL THR PHE SEQRES 18 B 488 ALA ALA ARG GLU GLU GLY VAL SER SER SER THR SER THR SEQRES 19 B 488 GLN VAL GLN ILE LEU SER ASN ALA LEU THR LYS ALA GLY SEQRES 20 B 488 GLN ALA ALA ALA ASN ALA LYS THR VAL TYR GLY GLU ASN SEQRES 21 B 488 THR HIS ARG THR PHE SER VAL VAL VAL ASP ASP CYS SER SEQRES 22 B 488 MET ARG ALA VAL LEU ARG ARG LEU GLN VAL GLY GLY GLY SEQRES 23 B 488 THR LEU LYS PHE PHE LEU THR THR PRO VAL PRO SER LEU SEQRES 24 B 488 CYS VAL THR ALA THR GLY PRO ASN ALA VAL SER ALA VAL SEQRES 25 B 488 PHE LEU LEU LYS PRO GLN LYS ILE CYS LEU ASP TRP LEU SEQRES 26 B 488 GLY HIS SER GLN GLY SER PRO SER ALA GLY SER SER ALA SEQRES 27 B 488 SER ARG ALA SER GLY SER GLU PRO THR ASP SER GLN ASP SEQRES 28 B 488 SER ALA SER ASP ALA VAL SER HIS GLY ASP PRO GLU ASP SEQRES 29 B 488 LEU ASP GLY ALA ALA ARG ALA GLY GLU ALA GLY ALA LEU SEQRES 30 B 488 HIS ALA CYS PRO MET PRO SER SER THR THR ARG VAL THR SEQRES 31 B 488 PRO THR THR LYS ARG GLY ARG SER GLY GLY GLU ASP ALA SEQRES 32 B 488 ARG ALA ASP THR ALA LEU LYS LYS PRO LYS THR GLY SER SEQRES 33 B 488 PRO THR ALA PRO PRO PRO ALA ASP PRO VAL PRO LEU ASP SEQRES 34 B 488 THR GLU ASP ASP SER ASP ALA ALA ASP GLY THR ALA ALA SEQRES 35 B 488 ARG PRO ALA ALA PRO ASP ALA ARG SER GLY SER ARG TYR SEQRES 36 B 488 ALA CYS TYR PHE ARG ASP LEU PRO THR GLY GLU ALA SER SEQRES 37 B 488 PRO GLY ALA PHE SER ALA PHE ARG GLY GLY PRO GLN THR SEQRES 38 B 488 PRO TYR GLY PHE GLY PHE PRO SEQRES 1 C 47 DG DC DC DA DC DT DA DC DG DA DC DA DC SEQRES 2 C 47 DC DT DT DG DA DT DC DG DC DC DT DC DG SEQRES 3 C 47 DC DA DG DC DC DG DT DC DC DA DA DC DC SEQRES 4 C 47 DA DA DC DT DC DA DA AS SEQRES 1 D 68 DA DT DT DT DG DC DT DG DA DC DC DT DT SEQRES 2 D 68 DT DG DT DT DC DT DG DG DG DG DT DG DA SEQRES 3 D 68 DG DT DT DG DG DT DT DG DG DA DC DG DG SEQRES 4 D 68 DC DT DG DC DG DA DG DG DC DG DA DT DC SEQRES 5 D 68 DA DA DG DG DT DG DT DC DG DT DA DG DT SEQRES 6 D 68 DG DG DC HET AS C 24 21 HET CA A1301 1 HET CA A1302 1 HETNAM AS 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 AS C10 H14 N5 O5 P S FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *176(H2 O) HELIX 1 AA1 VAL A 81 ASP A 83 5 3 HELIX 2 AA2 PRO A 87 ARG A 91 5 5 HELIX 3 AA3 HIS A 168 ILE A 175 1 8 HELIX 4 AA4 LYS A 209 GLN A 217 1 9 HELIX 5 AA5 ALA A 220 GLU A 234 1 15 HELIX 6 AA6 SER A 235 SER A 239 5 5 HELIX 7 AA7 SER A 244 ASP A 246 5 3 HELIX 8 AA8 SER A 275 ASP A 284 1 10 HELIX 9 AA9 ASP A 298 ASP A 306 1 9 HELIX 10 AB1 ALA A 331 PHE A 335 5 5 HELIX 11 AB2 PRO A 420 ARG A 430 1 11 HELIX 12 AB3 SER A 442 GLY A 458 1 17 HELIX 13 AB4 PHE A 470 ILE A 482 1 13 HELIX 14 AB5 MET A 525 ASP A 531 1 7 HELIX 15 AB6 LYS A 539 LEU A 548 1 10 HELIX 16 AB7 ASP A 559 GLY A 567 1 9 HELIX 17 AB8 GLY A 567 LEU A 593 1 27 HELIX 18 AB9 LEU A 593 GLY A 606 1 14 HELIX 19 AC1 ASN A 608 ASP A 615 1 8 HELIX 20 AC2 GLN A 617 LYS A 632 1 16 HELIX 21 AC3 SER A 720 HIS A 729 1 10 HELIX 22 AC4 ARG A 739 VAL A 743 5 5 HELIX 23 AC5 SER A 772 ILE A 792 1 21 HELIX 24 AC6 PRO A 793 SER A 795 5 3 HELIX 25 AC7 SER A 796 SER A 816 1 21 HELIX 26 AC8 SER A 816 VAL A 823 1 8 HELIX 27 AC9 CYS A 830 TRP A 856 1 27 HELIX 28 AD1 ALA A 858 PHE A 866 1 9 HELIX 29 AD2 GLU A 868 ARG A 873 1 6 HELIX 30 AD3 GLY A 901 PHE A 918 1 18 HELIX 31 AD4 CYS A 963 ASP A 980 1 18 HELIX 32 AD5 ASP A 980 LEU A 990 1 11 HELIX 33 AD6 ALA A 991 ARG A 993 5 3 HELIX 34 AD7 PRO A 994 ALA A 1000 5 7 HELIX 35 AD8 LEU A 1007 ASP A 1023 1 17 HELIX 36 AD9 ASP A 1027 VAL A 1032 5 6 HELIX 37 AE1 HIS A 1040 TYR A 1044 5 5 HELIX 38 AE2 LEU A 1049 ALA A 1063 1 15 HELIX 39 AE3 ARG A 1081 THR A 1086 1 6 HELIX 40 AE4 ARG A 1089 ARG A 1094 5 6 HELIX 41 AE5 ASP A 1145 HIS A 1152 1 8 HELIX 42 AE6 ASN A 1157 LYS A 1174 1 18 HELIX 43 AE7 ALA A 1175 GLY A 1178 5 4 HELIX 44 AE8 ASN A 1180 ARG A 1190 1 11 HELIX 45 AE9 PRO A 1199 ALA A 1209 1 11 HELIX 46 AF1 THR A 1219 ALA A 1235 1 17 HELIX 47 AF2 GLY B 37 ALA B 48 1 12 HELIX 48 AF3 PRO B 49 ARG B 51 5 3 HELIX 49 AF4 SER B 84 PHE B 86 5 3 HELIX 50 AF5 LEU B 109 ARG B 113 5 5 HELIX 51 AF6 ALA B 153 THR B 156 5 4 HELIX 52 AF7 THR B 181 THR B 192 1 12 HELIX 53 AF8 CYS B 272 LEU B 281 1 10 SHEET 1 AA1 2 PHE A 74 PRO A 79 0 SHEET 2 AA1 2 VAL A 94 LEU A 99 -1 O GLY A 97 N PHE A 76 SHEET 1 AA2 2 LYS A 104 CYS A 107 0 SHEET 2 AA2 2 ASP A 110 ASP A 113 -1 O ARG A 112 N VAL A 105 SHEET 1 AA3 2 LEU A 129 TRP A 130 0 SHEET 2 AA3 2 VAL A 133 ASP A 134 -1 O VAL A 133 N TRP A 130 SHEET 1 AA4 7 GLN A 328 PRO A 329 0 SHEET 2 AA4 7 VAL A 341 THR A 346 -1 O ASN A 344 N GLN A 328 SHEET 3 AA4 7 ARG A 193 TYR A 199 1 N HIS A 197 O PHE A 343 SHEET 4 AA4 7 GLY A 179 LEU A 187 -1 N ILE A 182 O VAL A 198 SHEET 5 AA4 7 VAL A 146 GLU A 157 -1 N ASN A 155 O VAL A 181 SHEET 6 AA4 7 GLY A 314 LEU A 318 -1 O TYR A 316 N PHE A 147 SHEET 7 AA4 7 LEU A 350 ILE A 352 -1 O ALA A 351 N ARG A 317 SHEET 1 AA5 4 GLN A 203 ASN A 208 0 SHEET 2 AA5 4 ALA A 266 VAL A 273 -1 O VAL A 271 N PHE A 205 SHEET 3 AA5 4 PHE A 248 ASP A 257 -1 N GLU A 251 O ARG A 270 SHEET 4 AA5 4 PHE A 634 ILE A 635 1 O ILE A 635 N THR A 256 SHEET 1 AA6 6 VAL A 436 PHE A 440 0 SHEET 2 AA6 6 LEU A 406 LEU A 414 1 N LEU A 411 O LEU A 438 SHEET 3 AA6 6 LEU A 390 ASP A 400 -1 N ILE A 394 O PHE A 412 SHEET 4 AA6 6 LYS A 363 LYS A 372 -1 N CYS A 366 O LEU A 397 SHEET 5 AA6 6 PHE A 461 GLY A 464 1 O THR A 463 N MET A 365 SHEET 6 AA6 6 VAL A 521 ASP A 524 1 O ILE A 523 N VAL A 462 SHEET 1 AA7 2 PHE A 499 TRP A 502 0 SHEET 2 AA7 2 LYS A 514 VAL A 517 -1 O LYS A 516 N ARG A 500 SHEET 1 AA8 5 GLY A 707 HIS A 709 0 SHEET 2 AA8 5 LEU A 924 ALA A 937 -1 O LEU A 933 N HIS A 709 SHEET 3 AA8 5 VAL A 713 PHE A 718 -1 N ASP A 717 O GLU A 925 SHEET 4 AA8 5 SER A 889 ARG A 895 -1 O ILE A 890 N PHE A 716 SHEET 5 AA8 5 SER A 879 GLY A 885 -1 N TYR A 884 O PHE A 891 SHEET 1 AA9 4 GLY A 707 HIS A 709 0 SHEET 2 AA9 4 LEU A 924 ALA A 937 -1 O LEU A 933 N HIS A 709 SHEET 3 AA9 4 LYS A 940 ILE A 945 -1 O ILE A 942 N LEU A 934 SHEET 4 AA9 4 MET A 950 LYS A 953 -1 O LEU A 951 N GLY A 943 SHEET 1 AB1 3 LEU A 736 SER A 737 0 SHEET 2 AB1 3 ARG A 760 VAL A 765 -1 O PHE A 763 N SER A 737 SHEET 3 AB1 3 TYR A 752 VAL A 757 -1 N VAL A 757 O ARG A 760 SHEET 1 AB2 3 LEU A1033 GLU A1036 0 SHEET 2 AB2 3 ARG A1071 ILE A1076 -1 O ILE A1072 N ALA A1035 SHEET 3 AB2 3 ALA A1143 GLU A1144 -1 O GLU A1144 N VAL A1075 SHEET 1 AB3 3 VAL A1195 TRP A1196 0 SHEET 2 AB3 3 SER B 164 VAL B 169 1 O VAL B 166 N TRP A1196 SHEET 3 AB3 3 GLY A1212 GLY A1215 -1 N GLY A1212 O VAL B 169 SHEET 1 AB4 5 ARG B 88 ARG B 90 0 SHEET 2 AB4 5 CYS B 31 GLN B 36 -1 N GLN B 32 O ARG B 90 SHEET 3 AB4 5 LEU B 120 THR B 128 -1 O VAL B 123 N LEU B 35 SHEET 4 AB4 5 THR B 135 THR B 144 -1 O TRP B 141 N ARG B 121 SHEET 5 AB4 5 GLU B 148 GLU B 151 -1 O GLU B 148 N THR B 144 SHEET 1 AB5 5 ARG B 88 ARG B 90 0 SHEET 2 AB5 5 CYS B 31 GLN B 36 -1 N GLN B 32 O ARG B 90 SHEET 3 AB5 5 LEU B 120 THR B 128 -1 O VAL B 123 N LEU B 35 SHEET 4 AB5 5 THR B 135 THR B 144 -1 O TRP B 141 N ARG B 121 SHEET 5 AB5 5 LEU B 157 ARG B 160 -1 O LYS B 159 N LEU B 136 SHEET 1 AB613 ALA B 96 LEU B 99 0 SHEET 2 AB613 LEU B 58 GLY B 62 -1 N MET B 61 O ALA B 96 SHEET 3 AB613 GLY B 65 ILE B 72 -1 O HIS B 69 N LEU B 58 SHEET 4 AB613 GLU B 75 GLU B 82 -1 O LEU B 81 N ILE B 66 SHEET 5 AB613 SER B 310 LEU B 314 -1 O VAL B 312 N GLN B 76 SHEET 6 AB613 SER B 298 ALA B 303 -1 N LEU B 299 O PHE B 313 SHEET 7 AB613 GLY B 286 PHE B 291 -1 N PHE B 291 O SER B 298 SHEET 8 AB613 VAL B 176 LEU B 180 -1 N LEU B 178 O LEU B 288 SHEET 9 AB613 THR B 255 GLU B 259 -1 O TYR B 257 N ARG B 179 SHEET 10 AB613 CYS B 218 GLU B 225 1 N ALA B 222 O VAL B 256 SHEET 11 AB613 LYS B 209 PHE B 213 -1 N PHE B 210 O PHE B 221 SHEET 12 AB613 THR B 200 LEU B 204 -1 N GLU B 203 O SER B 211 SHEET 13 AB613 PHE B 265 VAL B 269 -1 O VAL B 267 N PHE B 202 SHEET 1 AB7 2 LEU B 101 VAL B 102 0 SHEET 2 AB7 2 ARG B 106 SER B 107 -1 O ARG B 106 N VAL B 102 LINK O3' DA C 23 P AS C 24 1555 1555 1.60 LINK OD1 ASP A 368 CA CA A1301 1555 1555 2.63 LINK OD1 ASP A 368 CA CA A1302 1555 1555 2.47 LINK OD2 ASP A 368 CA CA A1302 1555 1555 2.41 LINK O ILE A 369 CA CA A1302 1555 1555 2.52 LINK OE1 GLU A 370 CA CA A1302 1555 1555 2.75 LINK OE2 GLU A 370 CA CA A1302 1555 1555 2.58 LINK O TYR A 465 CA CA A1301 1555 1555 2.44 LINK OD1 ASP A 471 CA CA A1301 1555 1555 2.54 LINK OD2 ASP A 471 CA CA A1301 1555 1555 2.74 LINK CA CA A1301 O HOH A1405 1555 1555 2.98 LINK CA CA A1301 O HOH A1408 1555 1555 2.10 LINK CA CA A1301 O HOH A1463 1555 1555 2.76 LINK CA CA A1301 O HOH A1538 1555 1555 2.55 LINK CA CA A1301 O HOH C 101 1555 1555 2.45 LINK CA CA A1302 O HOH A1402 1555 1555 2.43 LINK CA CA A1302 O HOH A1405 1555 1555 2.58 LINK CA CA A1302 O3' DA C 23 1555 1555 2.61 LINK CA CA A1302 O5' AS C 24 1555 1555 2.57 LINK CA CA A1302 O HOH C 101 1555 1555 2.58 CISPEP 1 THR A 176 PRO A 177 0 -11.60 CISPEP 2 PRO A 920 PRO A 921 0 -1.81 CISPEP 3 ALA B 131 PRO B 132 0 -8.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000