HEADER MEMBRANE PROTEIN 27-MAR-23 8OK6 TITLE VARIANT SURFACE GLYCOPROTEIN VSG11 TWO MONOMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 GENE: TB427.BES126.15; SOURCE 5 EXPRESSION_SYSTEM: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5702 KEYWDS VARIANT SURFACE GLYCOPROTEIN SURAMIN TRYPANOSOMIASIS DRUG RESISTANCE KEYWDS 2 GLYCOSYLATION, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GKEKA,E.P.VLACHOU,J.P.ZEELEN,C.E.STEBBINS REVDAT 1 13-SEP-23 8OK6 0 JRNL AUTH S.DAKOVIC,J.P.ZEELEN,A.GKEKA,M.CHANDRA,M.VAN STRAATEN, JRNL AUTH 2 K.FOTI,J.ZHONG,E.P.VLACHOU,F.ARESTA-BRANCO,J.P.VERDI, JRNL AUTH 3 F.N.PAPAVASILIOU,C.E.STEBBINS JRNL TITL A STRUCTURAL CLASSIFICATION OF THE VARIANT SURFACE JRNL TITL 2 GLYCOPROTEINS OF THE AFRICAN TRYPANOSOMEY. JRNL REF PLOS NEGL TROP DIS V. 17 11621 2023 JRNL REFN ESSN 1935-2735 JRNL PMID 37656766 JRNL DOI 10.1371/JOURNAL.PNTD.0011621 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2700 - 5.1900 1.00 2929 154 0.2027 0.2198 REMARK 3 2 5.1900 - 4.1200 1.00 2776 146 0.1677 0.2076 REMARK 3 3 4.1200 - 3.6000 1.00 2724 143 0.1633 0.1970 REMARK 3 4 3.6000 - 3.2700 1.00 2716 143 0.1764 0.1921 REMARK 3 5 3.2700 - 3.0300 1.00 2689 142 0.1947 0.2418 REMARK 3 6 3.0300 - 2.8600 1.00 2683 141 0.2042 0.2203 REMARK 3 7 2.8600 - 2.7100 1.00 2663 140 0.2022 0.2602 REMARK 3 8 2.7100 - 2.5900 1.00 2678 141 0.2060 0.2477 REMARK 3 9 2.5900 - 2.4900 1.00 2666 141 0.2080 0.2284 REMARK 3 10 2.4900 - 2.4100 1.00 2669 140 0.2022 0.2591 REMARK 3 11 2.4100 - 2.3300 1.00 2662 140 0.2062 0.2728 REMARK 3 12 2.3300 - 2.2700 1.00 2638 139 0.2105 0.2652 REMARK 3 13 2.2700 - 2.2100 1.00 2650 139 0.2138 0.2532 REMARK 3 14 2.2100 - 2.1500 1.00 2651 140 0.2190 0.2629 REMARK 3 15 2.1500 - 2.1000 1.00 2631 138 0.2224 0.2397 REMARK 3 16 2.1000 - 2.0600 1.00 2631 139 0.2389 0.2595 REMARK 3 17 2.0600 - 2.0200 1.00 2631 138 0.2443 0.2932 REMARK 3 18 2.0200 - 1.9800 1.00 2691 142 0.2419 0.2870 REMARK 3 19 1.9800 - 1.9400 1.00 2593 137 0.2492 0.2746 REMARK 3 20 1.9400 - 1.9100 1.00 2643 139 0.2621 0.3208 REMARK 3 21 1.9100 - 1.8800 1.00 2645 139 0.2847 0.3062 REMARK 3 22 1.8800 - 1.8500 1.00 2601 137 0.2893 0.3742 REMARK 3 23 1.8500 - 1.8200 1.00 2648 139 0.2955 0.3122 REMARK 3 24 1.8200 - 1.8000 1.00 2631 139 0.3059 0.3350 REMARK 3 25 1.8000 - 1.7700 1.00 2580 135 0.3171 0.3397 REMARK 3 26 1.7700 - 1.7500 0.94 2534 135 0.3299 0.3786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.236 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.729 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5910 REMARK 3 ANGLE : 1.176 8043 REMARK 3 CHIRALITY : 0.072 960 REMARK 3 PLANARITY : 0.014 1021 REMARK 3 DIHEDRAL : 15.914 2212 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1292128483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUMSULFATE 100 MM SODIUM REMARK 280 ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -242.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 38.12200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -66.02924 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 76.24400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -297.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 76.24400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 38.12200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 66.02924 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 SO4 A 504 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 506 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 C 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 392 REMARK 465 GLY A 393 REMARK 465 THR A 394 REMARK 465 ARG A 395 REMARK 465 HIS A 396 REMARK 465 LEU A 397 REMARK 465 GLU A 398 REMARK 465 THR A 399 REMARK 465 THR A 400 REMARK 465 LYS A 401 REMARK 465 GLN A 402 REMARK 465 ARG A 403 REMARK 465 VAL A 404 REMARK 465 SER A 405 REMARK 465 ASN A 406 REMARK 465 GLU A 407 REMARK 465 GLN A 408 REMARK 465 GLY A 409 REMARK 465 LYS A 410 REMARK 465 THR A 411 REMARK 465 GLN A 412 REMARK 465 GLN A 413 REMARK 465 THR A 414 REMARK 465 GLN A 415 REMARK 465 GLN A 416 REMARK 465 THR A 417 REMARK 465 CYS A 418 REMARK 465 GLU A 419 REMARK 465 GLN A 420 REMARK 465 TYR A 421 REMARK 465 ASN A 422 REMARK 465 ASN A 423 REMARK 465 LYS A 424 REMARK 465 LYS A 425 REMARK 465 ASN A 426 REMARK 465 ASP A 427 REMARK 465 CYS A 428 REMARK 465 VAL A 429 REMARK 465 LYS A 430 REMARK 465 THR A 431 REMARK 465 GLY A 432 REMARK 465 VAL A 433 REMARK 465 CYS A 434 REMARK 465 LYS A 435 REMARK 465 TRP A 436 REMARK 465 GLU A 437 REMARK 465 GLU A 438 REMARK 465 VAL C 392 REMARK 465 GLY C 393 REMARK 465 THR C 394 REMARK 465 ARG C 395 REMARK 465 HIS C 396 REMARK 465 LEU C 397 REMARK 465 GLU C 398 REMARK 465 THR C 399 REMARK 465 THR C 400 REMARK 465 LYS C 401 REMARK 465 GLN C 402 REMARK 465 ARG C 403 REMARK 465 VAL C 404 REMARK 465 SER C 405 REMARK 465 ASN C 406 REMARK 465 GLU C 407 REMARK 465 GLN C 408 REMARK 465 GLY C 409 REMARK 465 LYS C 410 REMARK 465 THR C 411 REMARK 465 GLN C 412 REMARK 465 GLN C 413 REMARK 465 THR C 414 REMARK 465 GLN C 415 REMARK 465 GLN C 416 REMARK 465 THR C 417 REMARK 465 CYS C 418 REMARK 465 GLU C 419 REMARK 465 GLN C 420 REMARK 465 TYR C 421 REMARK 465 ASN C 422 REMARK 465 ASN C 423 REMARK 465 LYS C 424 REMARK 465 LYS C 425 REMARK 465 ASN C 426 REMARK 465 ASP C 427 REMARK 465 CYS C 428 REMARK 465 VAL C 429 REMARK 465 LYS C 430 REMARK 465 THR C 431 REMARK 465 GLY C 432 REMARK 465 VAL C 433 REMARK 465 CYS C 434 REMARK 465 LYS C 435 REMARK 465 TRP C 436 REMARK 465 GLU C 437 REMARK 465 GLU C 438 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 54 CG CD1 CD2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 LEU C 54 CG CD1 CD2 REMARK 470 LYS C 282 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 314 O HOH C 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 365 OE2 GLU A 365 2545 1.43 REMARK 500 CD GLU A 365 OE2 GLU A 365 2545 2.07 REMARK 500 OG1 THR C 251 O1 SO4 C 503 2655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 51 -83.22 -82.30 REMARK 500 THR A 52 102.28 -45.36 REMARK 500 LEU A 54 105.46 -32.09 REMARK 500 ASP A 100 27.40 -79.47 REMARK 500 THR A 171 -164.07 -112.39 REMARK 500 THR A 207 -73.19 73.68 REMARK 500 ASP A 242 -104.17 -136.90 REMARK 500 ALA A 249 -75.21 -118.95 REMARK 500 THR A 316 -68.67 69.66 REMARK 500 CYS A 318 57.48 -98.90 REMARK 500 SER A 324 -79.59 -111.08 REMARK 500 THR C 52 72.19 54.17 REMARK 500 ASP C 100 34.49 -79.16 REMARK 500 THR C 207 -70.13 76.05 REMARK 500 ASP C 242 -77.50 -151.34 REMARK 500 ALA C 249 -94.78 -101.00 REMARK 500 THR C 316 -69.88 75.50 REMARK 500 CYS C 318 54.75 -96.75 REMARK 500 SER C 324 -74.32 -108.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 148 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 237 -13.18 REMARK 500 ARG A 237 -13.09 REMARK 500 THR A 238 -10.21 REMARK 500 LYS C 275 10.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OK6 A 24 438 UNP B3GVS7 B3GVS7_TRYBB 24 438 DBREF 8OK6 C 24 438 UNP B3GVS7 B3GVS7_TRYBB 24 438 SEQRES 1 A 415 ASN ILE GLY THR GLY ASP ASN VAL LEU HIS ARG ALA ALA SEQRES 2 A 415 LEU CYS GLY ILE ILE GLU LEU ALA GLY LYS ARG ALA LYS SEQRES 3 A 415 LEU GLU THR ALA LEU PRO ASN PHE GLN ASN GLU LEU ASN SEQRES 4 A 415 SER ILE LEU GLU LEU ASN MET THR ALA ALA GLU PRO THR SEQRES 5 A 415 TRP LEU ASP GLN PHE ARG ASP LYS ASP ASP ARG SER LYS SEQRES 6 A 415 PRO ARG ASP LEU THR LYS GLN PRO LEU PRO LYS ASP THR SEQRES 7 A 415 ASN TRP ALA ASP HIS TRP THR ALA TRP ALA LYS ALA ALA SEQRES 8 A 415 LEU PRO LEU LEU ASN ASP GLU THR HIS GLN ALA LYS LEU SEQRES 9 A 415 LYS GLU TYR LYS LEU ALA GLY LEU GLN PRO GLU LYS LEU SEQRES 10 A 415 GLU ARG ALA ARG ASN THR ILE ARG ARG LEU THR ALA GLU SEQRES 11 A 415 ALA VAL ALA LYS ALA GLN ASP PRO THR VAL ALA GLU SER SEQRES 12 A 415 THR ALA ASP LEU THR THR GLU GLU ASP LEU GLN LYS GLN SEQRES 13 A 415 ILE ASN GLN ALA VAL TYR SER LYS ASP THR GLU PRO ASP SEQRES 14 A 415 ASP ASP PHE ASN GLY TYR THR ALA PHE GLU GLY LYS ALA SEQRES 15 A 415 SER THR ASN ARG GLN THR ILE CYS GLY SER ALA VAL ALA SEQRES 16 A 415 GLY SER LYS ALA THR ASN ALA MET ASP ALA LEU PHE CYS SEQRES 17 A 415 VAL CYS ALA ASP ASP ARG THR ASN GLY ALA ASP ALA GLY SEQRES 18 A 415 LYS ALA CYS VAL ALA GLY THR ALA PRO GLY THR GLY TRP SEQRES 19 A 415 ASN PRO GLY VAL THR ALA THR PRO THR GLY THR MET LEU SEQRES 20 A 415 GLN LYS VAL ARG LYS LEU CYS ASN THR HIS GLY LYS THR SEQRES 21 A 415 THR LEU SER ALA ALA ALA ILE GLU GLY ARG LEU THR ALA SEQRES 22 A 415 VAL GLY ASN LEU LEU THR ARG GLY SER ALA THR SER ILE SEQRES 23 A 415 LEU GLY SER PHE LEU ALA THR ASP CYS SER GLY ASP GLN SEQRES 24 A 415 GLY SER GLY MET CYS VAL ALA TYR THR GLU VAL THR ASP SEQRES 25 A 415 ALA LYS GLY THR PRO THR LYS ASP ILE PRO TRP MET GLN SEQRES 26 A 415 LYS LEU ASP SER VAL ARG ILE LYS LEU GLN LYS HIS GLU SEQRES 27 A 415 ARG ALA VAL GLU LYS LEU GLY LYS PRO GLN HIS ASP LEU SEQRES 28 A 415 LYS THR ILE LEU THR LEU ALA LYS ASP PRO ALA TYR LEU SEQRES 29 A 415 GLN LEU ALA SER VAL GLY THR ARG HIS LEU GLU THR THR SEQRES 30 A 415 LYS GLN ARG VAL SER ASN GLU GLN GLY LYS THR GLN GLN SEQRES 31 A 415 THR GLN GLN THR CYS GLU GLN TYR ASN ASN LYS LYS ASN SEQRES 32 A 415 ASP CYS VAL LYS THR GLY VAL CYS LYS TRP GLU GLU SEQRES 1 C 415 ASN ILE GLY THR GLY ASP ASN VAL LEU HIS ARG ALA ALA SEQRES 2 C 415 LEU CYS GLY ILE ILE GLU LEU ALA GLY LYS ARG ALA LYS SEQRES 3 C 415 LEU GLU THR ALA LEU PRO ASN PHE GLN ASN GLU LEU ASN SEQRES 4 C 415 SER ILE LEU GLU LEU ASN MET THR ALA ALA GLU PRO THR SEQRES 5 C 415 TRP LEU ASP GLN PHE ARG ASP LYS ASP ASP ARG SER LYS SEQRES 6 C 415 PRO ARG ASP LEU THR LYS GLN PRO LEU PRO LYS ASP THR SEQRES 7 C 415 ASN TRP ALA ASP HIS TRP THR ALA TRP ALA LYS ALA ALA SEQRES 8 C 415 LEU PRO LEU LEU ASN ASP GLU THR HIS GLN ALA LYS LEU SEQRES 9 C 415 LYS GLU TYR LYS LEU ALA GLY LEU GLN PRO GLU LYS LEU SEQRES 10 C 415 GLU ARG ALA ARG ASN THR ILE ARG ARG LEU THR ALA GLU SEQRES 11 C 415 ALA VAL ALA LYS ALA GLN ASP PRO THR VAL ALA GLU SER SEQRES 12 C 415 THR ALA ASP LEU THR THR GLU GLU ASP LEU GLN LYS GLN SEQRES 13 C 415 ILE ASN GLN ALA VAL TYR SER LYS ASP THR GLU PRO ASP SEQRES 14 C 415 ASP ASP PHE ASN GLY TYR THR ALA PHE GLU GLY LYS ALA SEQRES 15 C 415 SER THR ASN ARG GLN THR ILE CYS GLY SER ALA VAL ALA SEQRES 16 C 415 GLY SER LYS ALA THR ASN ALA MET ASP ALA LEU PHE CYS SEQRES 17 C 415 VAL CYS ALA ASP ASP ARG THR ASN GLY ALA ASP ALA GLY SEQRES 18 C 415 LYS ALA CYS VAL ALA GLY THR ALA PRO GLY THR GLY TRP SEQRES 19 C 415 ASN PRO GLY VAL THR ALA THR PRO THR GLY THR MET LEU SEQRES 20 C 415 GLN LYS VAL ARG LYS LEU CYS ASN THR HIS GLY LYS THR SEQRES 21 C 415 THR LEU SER ALA ALA ALA ILE GLU GLY ARG LEU THR ALA SEQRES 22 C 415 VAL GLY ASN LEU LEU THR ARG GLY SER ALA THR SER ILE SEQRES 23 C 415 LEU GLY SER PHE LEU ALA THR ASP CYS SER GLY ASP GLN SEQRES 24 C 415 GLY SER GLY MET CYS VAL ALA TYR THR GLU VAL THR ASP SEQRES 25 C 415 ALA LYS GLY THR PRO THR LYS ASP ILE PRO TRP MET GLN SEQRES 26 C 415 LYS LEU ASP SER VAL ARG ILE LYS LEU GLN LYS HIS GLU SEQRES 27 C 415 ARG ALA VAL GLU LYS LEU GLY LYS PRO GLN HIS ASP LEU SEQRES 28 C 415 LYS THR ILE LEU THR LEU ALA LYS ASP PRO ALA TYR LEU SEQRES 29 C 415 GLN LEU ALA SER VAL GLY THR ARG HIS LEU GLU THR THR SEQRES 30 C 415 LYS GLN ARG VAL SER ASN GLU GLN GLY LYS THR GLN GLN SEQRES 31 C 415 THR GLN GLN THR CYS GLU GLN TYR ASN ASN LYS LYS ASN SEQRES 32 C 415 ASP CYS VAL LYS THR GLY VAL CYS LYS TRP GLU GLU HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET GLC A 501 11 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET GLC C 501 11 HET SO4 C 502 5 HET SO4 C 503 5 HET SO4 C 504 5 HET SO4 C 505 5 HET SO4 C 506 5 HET SO4 C 507 5 HET SO4 C 508 5 HET SO4 C 509 5 HET SO4 C 510 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 5 GLC 2(C6 H12 O6) FORMUL 6 SO4 17(O4 S 2-) FORMUL 24 HOH *446(H2 O) HELIX 1 AA1 ASN A 30 GLU A 42 1 13 HELIX 2 AA2 PHE A 57 ALA A 72 1 16 HELIX 3 AA3 GLU A 73 ASP A 78 1 6 HELIX 4 AA4 GLN A 79 ARG A 81 5 3 HELIX 5 AA5 ASN A 102 ASP A 105 5 4 HELIX 6 AA6 HIS A 106 LEU A 115 1 10 HELIX 7 AA7 PRO A 116 LEU A 118 5 3 HELIX 8 AA8 ASN A 119 TYR A 130 1 12 HELIX 9 AA9 GLN A 136 GLN A 159 1 24 HELIX 10 AB1 ASP A 160 LEU A 170 1 11 HELIX 11 AB2 THR A 172 SER A 186 1 15 HELIX 12 AB3 THR A 199 LYS A 204 5 6 HELIX 13 AB4 ASN A 208 GLY A 214 1 7 HELIX 14 AB5 ASN A 224 ALA A 234 1 11 HELIX 15 AB6 ASP A 242 ALA A 246 5 5 HELIX 16 AB7 THR A 266 LYS A 275 1 10 HELIX 17 AB8 SER A 286 LEU A 301 1 16 HELIX 18 AB9 THR A 339 ILE A 344 1 6 HELIX 19 AC1 ILE A 344 LEU A 367 1 24 HELIX 20 AC2 LEU A 367 LYS A 382 1 16 HELIX 21 AC3 ASP A 383 ALA A 390 1 8 HELIX 22 AC4 ASN C 30 GLU C 42 1 13 HELIX 23 AC5 PHE C 57 ALA C 72 1 16 HELIX 24 AC6 GLU C 73 ASP C 78 1 6 HELIX 25 AC7 GLN C 79 ARG C 81 5 3 HELIX 26 AC8 ASN C 102 LEU C 118 1 17 HELIX 27 AC9 ASN C 119 TYR C 130 1 12 HELIX 28 AD1 GLN C 136 GLN C 159 1 24 HELIX 29 AD2 ASP C 160 LEU C 170 1 11 HELIX 30 AD3 THR C 172 SER C 186 1 15 HELIX 31 AD4 THR C 199 LYS C 204 5 6 HELIX 32 AD5 ASN C 208 GLY C 214 1 7 HELIX 33 AD6 ASN C 224 ALA C 234 1 11 HELIX 34 AD7 ASP C 242 ALA C 246 5 5 HELIX 35 AD8 THR C 266 LYS C 275 1 10 HELIX 36 AD9 SER C 286 LEU C 301 1 16 HELIX 37 AE1 THR C 339 ILE C 344 1 6 HELIX 38 AE2 ILE C 344 LYS C 382 1 39 HELIX 39 AE3 ASP C 383 ALA C 390 1 8 SHEET 1 AA1 2 ALA A 48 LYS A 49 0 SHEET 2 AA1 2 THR A 283 THR A 284 1 O THR A 283 N LYS A 49 SHEET 1 AA2 3 THR A 302 ARG A 303 0 SHEET 2 AA2 3 SER A 308 PHE A 313 -1 O ILE A 309 N THR A 302 SHEET 3 AA2 3 GLY A 325 TYR A 330 -1 O VAL A 328 N LEU A 310 SHEET 1 AA3 2 ALA C 48 LYS C 49 0 SHEET 2 AA3 2 THR C 283 THR C 284 1 O THR C 283 N LYS C 49 SHEET 1 AA4 3 THR C 302 ARG C 303 0 SHEET 2 AA4 3 SER C 308 PHE C 313 -1 O ILE C 309 N THR C 302 SHEET 3 AA4 3 GLY C 325 TYR C 330 -1 O VAL C 328 N LEU C 310 SSBOND 1 CYS A 38 CYS A 277 1555 1555 2.04 SSBOND 2 CYS A 213 CYS A 231 1555 1555 2.04 SSBOND 3 CYS A 233 CYS A 247 1555 1555 2.03 SSBOND 4 CYS A 318 CYS A 327 1555 1555 2.08 SSBOND 5 CYS C 38 CYS C 277 1555 1555 2.04 SSBOND 6 CYS C 213 CYS C 231 1555 1555 2.05 SSBOND 7 CYS C 233 CYS C 247 1555 1555 2.02 SSBOND 8 CYS C 318 CYS C 327 1555 1555 2.05 LINK ND2 ASN A 68 C1 NAG B 1 1555 1555 1.44 LINK OG SER A 324 C1 GLC A 501 1555 1555 1.47 LINK ND2 ASN C 68 C1 NAG D 1 1555 1555 1.46 LINK OG SER C 324 C1 GLC C 501 1555 1555 1.37 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 6 1555 1555 1.44 LINK O2 MAN B 4 C1 MAN B 5 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.43 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.43 CRYST1 76.244 76.244 212.257 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013116 0.007572 0.000000 0.00000 SCALE2 0.000000 0.015145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004711 0.00000