HEADER OXIDOREDUCTASE 31-MAR-23 8OMY TITLE NI,FE-CODH -600MV STATE : 35 MIN DIOXYGEN EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.7.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS Z-2901; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: COOS2, COOSII, CHY_0085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CLUSTER C, 4FE-4S, CYTOPLASM, IRON, IRON-SULFUR, MEMBRANE, METAL- KEYWDS 2 BINDING, NICKEL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BASAK,J.-H.JEOUNG,H.DOBBEK REVDAT 2 01-OCT-25 8OMY 1 LINK REVDAT 1 06-DEC-23 8OMY 0 JRNL AUTH Y.BASAK,J.H.JEOUNG,L.DOMNIK,H.DOBBEK JRNL TITL STEPWISE O 2 -INDUCED REARRANGEMENT AND DISASSEMBLY OF THE JRNL TITL 2 [NIFE 4 (OH)( MU 3 -S) 4 ] ACTIVE SITE CLUSTER OF CO JRNL TITL 3 DEHYDROGENASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 05341 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 37279092 JRNL DOI 10.1002/ANIE.202305341 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 114278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7500 - 3.3000 0.97 8126 145 0.1169 0.1333 REMARK 3 2 3.3000 - 2.6200 0.97 7987 142 0.1183 0.1265 REMARK 3 3 2.6200 - 2.2900 0.99 8123 145 0.1045 0.1260 REMARK 3 4 2.2900 - 2.0800 0.97 7976 142 0.1055 0.1360 REMARK 3 5 2.0800 - 1.9300 0.98 8061 143 0.1102 0.1677 REMARK 3 6 1.9300 - 1.8100 0.99 8108 145 0.1093 0.1534 REMARK 3 7 1.8100 - 1.7200 0.99 8116 145 0.1091 0.1660 REMARK 3 8 1.7200 - 1.6500 0.98 7957 141 0.1242 0.2057 REMARK 3 9 1.6500 - 1.5900 0.99 8099 145 0.1316 0.1977 REMARK 3 10 1.5900 - 1.5300 0.99 8078 143 0.1417 0.1717 REMARK 3 11 1.5300 - 1.4800 0.99 8105 145 0.1600 0.2045 REMARK 3 12 1.4800 - 1.4400 0.99 8038 143 0.1934 0.2487 REMARK 3 13 1.4400 - 1.4000 0.98 8034 143 0.2311 0.2395 REMARK 3 14 1.4000 - 1.3700 0.91 7470 133 0.2457 0.2935 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4922 REMARK 3 ANGLE : 1.456 6743 REMARK 3 CHIRALITY : 1.422 818 REMARK 3 PLANARITY : 0.013 878 REMARK 3 DIHEDRAL : 15.368 1847 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 40.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.690 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1190 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, PEG 3350 10-18%, REMARK 280 AMMONIUM SULPHATE 0.18M, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.19500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.19500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -314.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 172.46928 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 133.00269 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X1229 LIES ON A SPECIAL POSITION. REMARK 375 HOH X1549 LIES ON A SPECIAL POSITION. REMARK 375 HOH X1632 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 LYS X 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS X 466 O HOH X 1114 1.51 REMARK 500 HH11 ARG X 11 O HOH X 1109 1.56 REMARK 500 O HOH X 1280 O HOH X 1297 1.93 REMARK 500 O HOH X 1110 O HOH X 1366 1.95 REMARK 500 OG SER X 599 O HOH X 1101 1.97 REMARK 500 OD1 ASN X 414 O HOH X 1102 1.98 REMARK 500 O HOH X 1573 O HOH X 1648 2.03 REMARK 500 O HOH X 1532 O HOH X 1539 2.10 REMARK 500 O HOH X 1566 O HOH X 1722 2.12 REMARK 500 O HOH X 1467 O HOH X 1593 2.12 REMARK 500 OE2 GLU X 343 O HOH X 1103 2.16 REMARK 500 NE2 HIS X 261 O HOH X 1104 2.17 REMARK 500 O HOH X 1520 O HOH X 1638 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 1722 O HOH X 1722 2757 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 75 CD GLU X 75 OE2 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP X 570 CA - CB - CG ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 54.31 -90.27 REMARK 500 ASP X 63 -161.50 -106.90 REMARK 500 ALA X 112 85.71 -155.71 REMARK 500 LYS X 157 -168.58 -161.18 REMARK 500 CYS X 201 -123.75 -117.57 REMARK 500 ALA X 203 46.11 -149.66 REMARK 500 THR X 242 -155.75 -153.59 REMARK 500 ASN X 245 171.95 98.51 REMARK 500 HIS X 261 -41.29 -135.39 REMARK 500 CSO X 294 -150.52 55.27 REMARK 500 CSO X 294 -154.70 61.17 REMARK 500 SER X 312 -123.11 44.73 REMARK 500 ASP X 330 -93.53 -112.64 REMARK 500 GLN X 332 129.95 83.02 REMARK 500 ASP X 454 -6.67 77.24 REMARK 500 MET X 560 -57.05 -138.83 REMARK 500 SER X 598 -62.34 -145.02 REMARK 500 TYR X 607 149.99 -175.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X1002 S1 107.7 REMARK 620 3 FES X1002 S2 116.4 105.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X1002 S1 117.8 REMARK 620 3 FES X1002 S2 113.8 103.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X1001 S1 117.1 REMARK 620 3 SF4 X1001 S2 109.1 103.2 REMARK 620 4 SF4 X1001 S4 113.1 105.1 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X1001 S1 120.8 REMARK 620 3 SF4 X1001 S3 101.4 104.7 REMARK 620 4 SF4 X1001 S4 120.8 102.6 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X1001 S2 108.6 REMARK 620 3 SF4 X1001 S3 117.3 104.2 REMARK 620 4 SF4 X1001 S4 114.9 106.2 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X1001 S1 118.7 REMARK 620 3 SF4 X1001 S2 115.8 103.2 REMARK 620 4 SF4 X1001 S3 109.5 104.8 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 102.0 REMARK 620 3 H2S X1005 S 100.5 109.0 REMARK 620 4 HOH X1104 O 61.7 108.3 141.3 REMARK 620 5 HOH X1105 O 64.6 166.4 77.3 64.0 REMARK 620 6 HOH X1579 O 145.5 69.4 55.3 152.6 122.8 REMARK 620 7 HOH X1596 O 151.6 105.5 63.7 114.9 88.1 45.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1010 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CSO X 294 SG REMARK 620 2 CSO X 294 OD 55.6 REMARK 620 3 CYS X 476 SG 124.4 136.9 REMARK 620 4 H2S X1005 S 56.2 99.3 115.0 REMARK 620 5 HOH X1569 O 131.2 92.7 104.2 102.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 295 SG REMARK 620 2 H2S X1004 S 131.3 REMARK 620 3 HOH X1104 O 117.5 106.1 REMARK 620 4 HOH X1579 O 71.3 83.3 148.0 REMARK 620 5 HOH X1596 O 123.9 36.8 116.5 54.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1006 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 H2S X1005 S 107.3 REMARK 620 3 HOH X1105 O 75.7 66.5 REMARK 620 4 HOH X1563 O 95.6 122.8 69.9 REMARK 620 5 HOH X1569 O 119.3 86.4 152.5 126.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1007 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 H2S X1004 S 123.1 REMARK 620 3 HOH X1563 O 110.8 96.3 REMARK 620 4 HOH X1569 O 109.9 102.4 113.8 REMARK 620 5 HOH X1596 O 145.3 31.0 97.9 73.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1009 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 H2S X1005 S 121.6 REMARK 620 3 HOH X1569 O 114.2 107.1 REMARK 620 4 HOH X1579 O 80.5 61.4 165.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE X1008 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 526 SG REMARK 620 2 H2S X1004 S 79.1 REMARK 620 3 HOH X1104 O 81.3 122.6 REMARK 620 4 HOH X1534 O 90.4 167.7 48.4 REMARK 620 5 HOH X1563 O 162.7 103.2 83.1 84.8 REMARK 620 6 HOH X1596 O 88.6 30.1 96.7 144.7 85.7 REMARK 620 7 HOH X1601 O 126.5 117.4 117.7 74.1 68.1 132.2 REMARK 620 N 1 2 3 4 5 6 DBREF 8OMY X 1 636 UNP Q9F8A8 COOS2_CARHZ 1 636 SEQRES 1 X 636 MET ALA LYS GLN ASN LEU LYS SER THR ASP ARG ALA VAL SEQRES 2 X 636 GLN GLN MET LEU ASP LYS ALA LYS ARG GLU GLY ILE GLN SEQRES 3 X 636 THR VAL TRP ASP ARG TYR GLU ALA MET LYS PRO GLN CYS SEQRES 4 X 636 GLY PHE GLY GLU THR GLY LEU CYS CYS ARG HIS CYS LEU SEQRES 5 X 636 GLN GLY PRO CYS ARG ILE ASN PRO PHE GLY ASP GLU PRO SEQRES 6 X 636 LYS VAL GLY ILE CYS GLY ALA THR ALA GLU VAL ILE VAL SEQRES 7 X 636 ALA ARG GLY LEU ASP ARG SER ILE ALA ALA GLY ALA ALA SEQRES 8 X 636 GLY HIS SER GLY HIS ALA LYS HIS LEU ALA HIS THR LEU SEQRES 9 X 636 LYS LYS ALA VAL GLN GLY LYS ALA ALA SER TYR MET ILE SEQRES 10 X 636 LYS ASP ARG THR LYS LEU HIS SER ILE ALA LYS ARG LEU SEQRES 11 X 636 GLY ILE PRO THR GLU GLY GLN LYS ASP GLU ASP ILE ALA SEQRES 12 X 636 LEU GLU VAL ALA LYS ALA ALA LEU ALA ASP PHE HIS GLU SEQRES 13 X 636 LYS ASP THR PRO VAL LEU TRP VAL THR THR VAL LEU PRO SEQRES 14 X 636 PRO SER ARG VAL LYS VAL LEU SER ALA HIS GLY LEU ILE SEQRES 15 X 636 PRO ALA GLY ILE ASP HIS GLU ILE ALA GLU ILE MET HIS SEQRES 16 X 636 ARG THR SER MET GLY CYS ASP ALA ASP ALA GLN ASN LEU SEQRES 17 X 636 LEU LEU GLY GLY LEU ARG CYS SER LEU ALA ASP LEU ALA SEQRES 18 X 636 GLY CYS TYR MET GLY THR ASP LEU ALA ASP ILE LEU PHE SEQRES 19 X 636 GLY THR PRO ALA PRO VAL VAL THR GLU SER ASN LEU GLY SEQRES 20 X 636 VAL LEU LYS ALA ASP ALA VAL ASN VAL ALA VAL HIS GLY SEQRES 21 X 636 HIS ASN PRO VAL LEU SER ASP ILE ILE VAL SER VAL SER SEQRES 22 X 636 LYS GLU MET GLU ASN GLU ALA ARG ALA ALA GLY ALA THR SEQRES 23 X 636 GLY ILE ASN VAL VAL GLY ILE CSO CYS THR GLY ASN GLU SEQRES 24 X 636 VAL LEU MET ARG HIS GLY ILE PRO ALA CYS THR HIS SER SEQRES 25 X 636 VAL SER GLN GLU MET ALA MET ILE THR GLY ALA LEU ASP SEQRES 26 X 636 ALA MET ILE LEU ASP TYR GLN CYS ILE GLN PRO SER VAL SEQRES 27 X 636 ALA THR ILE ALA GLU CYS THR GLY THR THR VAL ILE THR SEQRES 28 X 636 THR MET GLU MET SER LYS ILE THR GLY ALA THR HIS VAL SEQRES 29 X 636 ASN PHE ALA GLU GLU ALA ALA VAL GLU ASN ALA LYS GLN SEQRES 30 X 636 ILE LEU ARG LEU ALA ILE ASP THR PHE LYS ARG ARG LYS SEQRES 31 X 636 GLY LYS PRO VAL GLU ILE PRO ASN ILE LYS THR LYS VAL SEQRES 32 X 636 VAL ALA GLY PHE SER THR GLU ALA ILE ILE ASN ALA LEU SEQRES 33 X 636 SER LYS LEU ASN ALA ASN ASP PRO LEU LYS PRO LEU ILE SEQRES 34 X 636 ASP ASN VAL VAL ASN GLY ASN ILE ARG GLY VAL CYS LEU SEQRES 35 X 636 PHE ALA GLY CYS ASN ASN VAL LYS VAL PRO GLN ASP GLN SEQRES 36 X 636 ASN PHE THR THR ILE ALA ARG LYS LEU LEU LYS GLN ASN SEQRES 37 X 636 VAL LEU VAL VAL ALA THR GLY CYS GLY ALA GLY ALA LEU SEQRES 38 X 636 MET ARG HIS GLY PHE MET ASP PRO ALA ASN VAL ASP GLU SEQRES 39 X 636 LEU CYS GLY ASP GLY LEU LYS ALA VAL LEU THR ALA ILE SEQRES 40 X 636 GLY GLU ALA ASN GLY LEU GLY GLY PRO LEU PRO PRO VAL SEQRES 41 X 636 LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ALA VAL SEQRES 42 X 636 ALA LEU VAL ALA ALA LEU ALA ASN ARG LEU GLY VAL ASP SEQRES 43 X 636 LEU ASP ARG LEU PRO VAL VAL ALA SER ALA ALA GLU ALA SEQRES 44 X 636 MET HIS GLU LYS ALA VAL ALA ILE GLY THR TRP ALA VAL SEQRES 45 X 636 THR ILE GLY LEU PRO THR HIS ILE GLY VAL LEU PRO PRO SEQRES 46 X 636 ILE THR GLY SER LEU PRO VAL THR GLN ILE LEU THR SER SEQRES 47 X 636 SER VAL LYS ASP ILE THR GLY GLY TYR PHE ILE VAL GLU SEQRES 48 X 636 LEU ASP PRO GLU THR ALA ALA ASP LYS LEU LEU ALA ALA SEQRES 49 X 636 ILE ASN GLU ARG ARG ALA GLY LEU GLY LEU PRO TRP MODRES 8OMY CSO X 294 CYS MODIFIED RESIDUE HET CSO X 294 16 HET SF4 X1001 8 HET FES X1002 4 HET FE2 X1003 2 HET H2S X1004 1 HET H2S X1005 1 HET FE X1006 1 HET FE X1007 1 HET FE X1008 1 HET FE X1009 1 HET FE X1010 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE2 FE (II) ION HETNAM H2S HYDROSULFURIC ACID HETNAM FE FE (III) ION HETSYN H2S HYDROGEN SULFIDE FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 FE2 FE 2+ FORMUL 5 H2S 2(H2 S) FORMUL 7 FE 5(FE 3+) FORMUL 12 HOH *625(H2 O) HELIX 1 AA1 ASP X 10 GLY X 24 1 15 HELIX 2 AA2 THR X 27 LYS X 36 1 10 HELIX 3 AA3 CYS X 39 GLY X 45 1 7 HELIX 4 AA4 THR X 73 GLN X 109 1 37 HELIX 5 AA5 ASP X 119 GLY X 131 1 13 HELIX 6 AA6 LYS X 138 ASP X 153 1 16 HELIX 7 AA7 VAL X 161 THR X 166 1 6 HELIX 8 AA8 PRO X 169 HIS X 179 1 11 HELIX 9 AA9 GLY X 185 THR X 197 1 13 HELIX 10 AB1 ASP X 204 GLY X 235 1 32 HELIX 11 AB2 ASN X 245 LEU X 249 5 5 HELIX 12 AB3 ASN X 262 MET X 276 1 15 HELIX 13 AB4 MET X 276 ALA X 283 1 8 HELIX 14 AB5 CSO X 294 GLY X 305 1 12 HELIX 15 AB6 HIS X 311 SER X 314 5 4 HELIX 16 AB7 GLN X 315 THR X 321 1 7 HELIX 17 AB8 PRO X 336 GLY X 346 1 11 HELIX 18 AB9 ALA X 367 GLU X 369 5 3 HELIX 19 AC1 ALA X 370 ARG X 389 1 20 HELIX 20 AC2 SER X 408 LYS X 418 1 11 HELIX 21 AC3 PRO X 424 ASN X 434 1 11 HELIX 22 AC4 ASP X 454 GLN X 467 1 14 HELIX 23 AC5 GLY X 475 HIS X 484 1 10 HELIX 24 AC6 ASP X 488 ALA X 490 5 3 HELIX 25 AC7 ASN X 491 CYS X 496 1 6 HELIX 26 AC8 GLY X 497 ASN X 511 1 15 HELIX 27 AC9 ASP X 528 GLY X 544 1 17 HELIX 28 AD1 ASP X 546 LEU X 550 5 5 HELIX 29 AD2 HIS X 561 GLY X 575 1 15 HELIX 30 AD3 SER X 589 SER X 598 1 10 HELIX 31 AD4 VAL X 600 GLY X 605 1 6 HELIX 32 AD5 ASP X 613 LEU X 632 1 20 SHEET 1 AA1 2 CYS X 47 CYS X 48 0 SHEET 2 AA1 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 AA2 2 VAL X 240 SER X 244 0 SHEET 2 AA2 2 THR X 401 ALA X 405 -1 O VAL X 403 N THR X 242 SHEET 1 AA3 6 ALA X 308 THR X 310 0 SHEET 2 AA3 6 ILE X 288 ILE X 293 1 N GLY X 292 O CYS X 309 SHEET 3 AA3 6 VAL X 254 GLY X 260 1 N VAL X 254 O ASN X 289 SHEET 4 AA3 6 LEU X 324 LEU X 329 1 O ILE X 328 N ALA X 257 SHEET 5 AA3 6 THR X 348 THR X 351 1 O ILE X 350 N LEU X 329 SHEET 6 AA3 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 AA4 6 VAL X 520 GLY X 524 0 SHEET 2 AA4 6 LEU X 470 THR X 474 1 N ALA X 473 O MET X 523 SHEET 3 AA4 6 VAL X 440 PHE X 443 1 N PHE X 443 O VAL X 472 SHEET 4 AA4 6 VAL X 552 ALA X 556 1 O SER X 555 N LEU X 442 SHEET 5 AA4 6 PRO X 577 ILE X 580 1 O HIS X 579 N ALA X 554 SHEET 6 AA4 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK C ILE X 293 N CSO X 294 1555 1555 1.34 LINK C CSO X 294 N ACYS X 295 1555 1555 1.33 LINK C CSO X 294 N BCYS X 295 1555 1555 1.33 LINK SG CYS X 39 FE2 FES X1002 1555 1555 2.26 LINK SG CYS X 47 FE1 FES X1002 1555 1555 2.27 LINK SG CYS X 48 FE3 SF4 X1001 1555 1555 2.33 LINK SG CYS X 51 FE2 SF4 X1001 1555 1555 2.30 LINK SG CYS X 56 FE1 SF4 X1001 1555 1555 2.34 LINK SG CYS X 70 FE4 SF4 X1001 1555 1555 2.33 LINK NE2 HIS X 261 FE AFE2 X1003 1555 1555 1.98 LINK SG BCSO X 294 FE FE X1010 1555 1555 2.43 LINK OD ACSO X 294 FE FE X1010 1555 1555 2.36 LINK SG ACYS X 295 FE AFE2 X1003 1555 1555 2.32 LINK SG BCYS X 295 FE BFE2 X1003 1555 1555 2.55 LINK SG CYS X 333 FE FE X1006 1555 1555 2.12 LINK SG CYS X 446 FE FE X1007 1555 1555 2.30 LINK SG CYS X 476 FE FE X1009 1555 1555 2.30 LINK SG CYS X 476 FE FE X1010 1555 1555 2.44 LINK SG ACYS X 526 FE FE X1008 1555 1555 2.08 LINK FE BFE2 X1003 S H2S X1004 1555 1555 2.41 LINK FE AFE2 X1003 S H2S X1005 1555 1555 2.12 LINK FE AFE2 X1003 O HOH X1104 1555 1555 2.23 LINK FE BFE2 X1003 O HOH X1104 1555 1555 2.65 LINK FE AFE2 X1003 O HOH X1105 1555 1555 2.09 LINK FE AFE2 X1003 O HOH X1579 1555 1555 2.42 LINK FE BFE2 X1003 O HOH X1579 1555 1555 2.05 LINK FE AFE2 X1003 O HOH X1596 1555 1555 2.55 LINK FE BFE2 X1003 O HOH X1596 1555 1555 2.08 LINK S H2S X1004 FE FE X1007 1555 1555 2.69 LINK S H2S X1004 FE FE X1008 1555 1555 1.96 LINK S H2S X1005 FE FE X1006 1555 1555 2.70 LINK S H2S X1005 FE FE X1009 1555 1555 1.95 LINK S H2S X1005 FE FE X1010 1555 1555 1.95 LINK FE FE X1006 O HOH X1105 1555 1555 1.97 LINK FE FE X1006 O HOH X1563 1555 1555 2.25 LINK FE FE X1006 O HOH X1569 1555 1555 2.20 LINK FE FE X1007 O HOH X1563 1555 1555 1.92 LINK FE FE X1007 O HOH X1569 1555 1555 2.78 LINK FE FE X1007 O HOH X1596 1555 1555 2.74 LINK FE FE X1008 O HOH X1104 1555 1555 2.63 LINK FE FE X1008 O HOH X1534 1555 1555 2.22 LINK FE FE X1008 O HOH X1563 1555 1555 2.44 LINK FE FE X1008 O HOH X1596 1555 1555 2.77 LINK FE FE X1008 O HOH X1601 1555 1555 1.95 LINK FE FE X1009 O HOH X1569 1555 1555 2.23 LINK FE FE X1009 O HOH X1579 1555 1555 2.19 LINK FE FE X1010 O HOH X1569 1555 1555 2.37 CISPEP 1 LYS X 36 PRO X 37 0 0.08 CISPEP 2 GLY X 54 PRO X 55 0 5.09 CISPEP 3 GLU X 64 PRO X 65 0 4.04 CISPEP 4 GLU X 64 PRO X 65 0 4.85 CRYST1 112.390 75.500 71.460 90.00 111.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008898 0.000000 0.003499 0.00000 SCALE2 0.000000 0.013245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015037 0.00000 CONECT 588 9789 CONECT 687 9788 CONECT 697 9782 CONECT 748 9781 CONECT 815 9780 CONECT 1040 9783 CONECT 3956 9792 CONECT 4462 4479 CONECT 4479 4462 4480 4481 CONECT 4480 4479 4482 4486 4489 CONECT 4481 4479 4483 4486 4490 CONECT 4482 4480 4484 4491 4493 CONECT 4483 4481 4485 4492 4494 CONECT 4484 4482 4488 CONECT 4485 4483 9800 CONECT 4486 4480 4481 4487 4495 CONECT 4486 4496 CONECT 4487 4486 CONECT 4488 4484 9800 CONECT 4489 4480 CONECT 4490 4481 CONECT 4491 4482 CONECT 4492 4483 CONECT 4493 4482 CONECT 4494 4483 CONECT 4495 4486 CONECT 4496 4486 CONECT 4505 9792 CONECT 4506 9793 CONECT 5076 9796 CONECT 6859 9797 CONECT 7338 9799 9800 CONECT 8045 9798 CONECT 9780 815 9785 9786 9787 CONECT 9781 748 9784 9786 9787 CONECT 9782 697 9784 9785 9787 CONECT 9783 1040 9784 9785 9786 CONECT 9784 9781 9782 9783 CONECT 9785 9780 9782 9783 CONECT 9786 9780 9781 9783 CONECT 9787 9780 9781 9782 CONECT 9788 687 9790 9791 CONECT 9789 588 9790 9791 CONECT 9790 9788 9789 CONECT 9791 9788 9789 CONECT 9792 3956 4505 9795 9804 CONECT 9792 98051027910296 CONECT 9793 4506 9794 980410279 CONECT 979310296 CONECT 9794 9793 9797 9798 CONECT 9795 9792 9796 9799 9800 CONECT 9796 5076 9795 980510263 CONECT 979610269 CONECT 9797 6859 97941026310269 CONECT 979710296 CONECT 9798 8045 9794 980410234 CONECT 9798102631029610301 CONECT 9799 7338 97951026910279 CONECT 9800 4485 4488 7338 9795 CONECT 980010269 CONECT 9804 9792 9793 9798 CONECT 9805 9792 9796 CONECT10234 9798 CONECT10263 9796 9797 9798 CONECT10269 9796 9797 9799 9800 CONECT10279 9792 9793 9799 CONECT10296 9792 9793 9797 9798 CONECT10301 9798 MASTER 472 0 11 32 16 0 0 6 5300 1 68 49 END