HEADER OXIDOREDUCTASE 31-MAR-23 8ON3 TITLE NI,FE-CODH -320MV + CN STATE : 24 H DIOXYGEN EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.7.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS Z-2901; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901 / DSM 6008; SOURCE 5 GENE: COOS2, COOSII, CHY_0085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CLUSTER C, 4FE-4S, CYTOPLASM, IRON, IRON-SULFUR, MEMBRANE, METAL- KEYWDS 2 BINDING, NICKEL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BASAK,J.-H.JEOUNG,H.DOBBEK REVDAT 2 23-OCT-24 8ON3 1 REMARK REVDAT 1 06-DEC-23 8ON3 0 JRNL AUTH Y.BASAK,J.H.JEOUNG,L.DOMNIK,H.DOBBEK JRNL TITL STEPWISE O 2 -INDUCED REARRANGEMENT AND DISASSEMBLY OF THE JRNL TITL 2 [NIFE 4 (OH)( MU 3 -S) 4 ] ACTIVE SITE CLUSTER OF CO JRNL TITL 3 DEHYDROGENASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 05341 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 37279092 JRNL DOI 10.1002/ANIE.202305341 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 52451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7900 - 4.2000 0.89 3456 138 0.1578 0.1664 REMARK 3 2 4.2000 - 3.3300 0.90 3461 136 0.1546 0.2135 REMARK 3 3 3.3300 - 2.9100 0.93 3559 141 0.1833 0.2252 REMARK 3 4 2.9100 - 2.6500 0.95 3627 144 0.1915 0.2717 REMARK 3 5 2.6500 - 2.4600 0.96 3650 145 0.1849 0.2067 REMARK 3 6 2.4600 - 2.3100 0.96 3644 143 0.1934 0.2446 REMARK 3 7 2.3100 - 2.2000 0.97 3674 146 0.1875 0.2430 REMARK 3 8 2.2000 - 2.1000 0.98 3690 147 0.2067 0.2688 REMARK 3 9 2.1000 - 2.0200 0.98 3712 146 0.2110 0.2432 REMARK 3 10 2.0200 - 1.9500 0.98 3707 147 0.2004 0.2191 REMARK 3 11 1.9500 - 1.8900 0.98 3699 147 0.2033 0.2300 REMARK 3 12 1.8900 - 1.8400 0.97 3714 147 0.2298 0.2842 REMARK 3 13 1.8400 - 1.7900 0.97 3664 146 0.2537 0.3103 REMARK 3 14 1.7900 - 1.7400 0.84 3195 126 0.2774 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4863 REMARK 3 ANGLE : 1.154 6632 REMARK 3 CHIRALITY : 0.064 800 REMARK 3 PLANARITY : 0.011 861 REMARK 3 DIHEDRAL : 19.834 1813 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ON3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52565 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.430 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0680 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, PEG 3350 10-18%, REMARK 280 AMMONIUM SULPHATE 0.18M, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.46000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.46000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 170.83713 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 132.24574 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X1257 LIES ON A SPECIAL POSITION. REMARK 375 HOH X1412 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 LYS X 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE X 269 HG SER X 273 1.60 REMARK 500 OE1 GLN X 109 HZ2 LYS X 111 1.60 REMARK 500 FE FE X 1006 O HOH X 1418 1.68 REMARK 500 O HOH X 1459 O HOH X 1482 1.98 REMARK 500 OE2 GLU X 509 O HOH X 1101 2.03 REMARK 500 O HOH X 1451 O HOH X 1472 2.14 REMARK 500 O THR X 345 O HOH X 1102 2.17 REMARK 500 OE1 GLN X 109 NZ LYS X 111 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 1338 O HOH X 1474 4747 1.98 REMARK 500 O HOH X 1350 O HOH X 1450 4757 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS X 51 CB CYS X 51 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 46 58.60 -90.74 REMARK 500 ASP X 63 -156.09 -102.22 REMARK 500 LYS X 157 -169.08 -168.28 REMARK 500 PRO X 160 -177.58 -66.35 REMARK 500 CYS X 201 -121.97 -112.98 REMARK 500 ALA X 203 49.57 -143.83 REMARK 500 THR X 242 -153.32 -154.60 REMARK 500 ASN X 245 173.64 100.67 REMARK 500 HIS X 261 -44.55 -133.05 REMARK 500 MET X 276 25.12 -74.30 REMARK 500 CSO X 294 -153.10 63.40 REMARK 500 CSO X 294 -154.71 63.40 REMARK 500 SER X 312 -122.35 52.82 REMARK 500 ASP X 330 -109.14 -106.78 REMARK 500 ASP X 330 -107.39 -108.54 REMARK 500 GLN X 332 127.41 87.57 REMARK 500 ASN X 420 107.35 -162.23 REMARK 500 ASP X 454 -7.74 81.31 REMARK 500 MET X 560 -61.46 -140.01 REMARK 500 SER X 598 -58.87 -144.02 REMARK 500 ILE X 603 -61.16 -95.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG X 628 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 39 SG REMARK 620 2 FES X1002 S1 107.3 REMARK 620 3 FES X1002 S2 120.3 104.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES X1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 FES X1002 S1 117.1 REMARK 620 3 FES X1002 S2 112.5 105.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 48 SG REMARK 620 2 SF4 X1001 S1 115.0 REMARK 620 3 SF4 X1001 S2 114.9 104.5 REMARK 620 4 SF4 X1001 S4 110.4 103.7 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 51 SG REMARK 620 2 SF4 X1001 S1 116.5 REMARK 620 3 SF4 X1001 S2 121.1 104.0 REMARK 620 4 SF4 X1001 S3 104.6 104.9 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 56 SG REMARK 620 2 SF4 X1001 S2 114.1 REMARK 620 3 SF4 X1001 S3 118.0 105.7 REMARK 620 4 SF4 X1001 S4 108.4 107.7 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 X1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 70 SG REMARK 620 2 SF4 X1001 S1 120.2 REMARK 620 3 SF4 X1001 S3 108.0 105.3 REMARK 620 4 SF4 X1001 S4 114.6 103.1 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 HOH X1103 O 56.1 REMARK 620 3 HOH X1418 O 123.0 152.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 261 NE2 REMARK 620 2 CYS X 295 SG 69.5 REMARK 620 3 HOH X1103 O 50.3 86.9 REMARK 620 4 HOH X1418 O 85.9 111.4 123.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VV2 X1003 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 333 SG REMARK 620 2 VV2 X1003 S2 109.0 REMARK 620 3 VV2 X1003 S3 90.6 109.2 REMARK 620 4 HOH X1418 O 100.0 104.2 139.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VV2 X1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 446 SG REMARK 620 2 VV2 X1003 S2 104.4 REMARK 620 3 VV2 X1003 S4 121.9 95.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VV2 X1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 476 SG REMARK 620 2 VV2 X1003 S2 113.1 REMARK 620 3 VV2 X1003 S3 151.0 59.1 REMARK 620 4 VV2 X1003 S4 106.3 98.6 52.8 REMARK 620 5 HOH X1418 O 120.6 99.9 88.3 116.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VV2 X1003 FE5 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 526 SG REMARK 620 2 VV2 X1003 S4 91.8 REMARK 620 3 VV2 X1003 S3 169.0 90.5 REMARK 620 4 VV2 X1003 S2 139.7 49.9 46.4 REMARK 620 5 HOH X1103 O 89.3 129.3 97.6 105.0 REMARK 620 6 HOH X1415 O 92.4 160.1 82.0 127.9 70.2 REMARK 620 N 1 2 3 4 5 DBREF 8ON3 X 1 636 UNP Q9F8A8 COOS2_CARHZ 1 636 SEQRES 1 X 636 MET ALA LYS GLN ASN LEU LYS SER THR ASP ARG ALA VAL SEQRES 2 X 636 GLN GLN MET LEU ASP LYS ALA LYS ARG GLU GLY ILE GLN SEQRES 3 X 636 THR VAL TRP ASP ARG TYR GLU ALA MET LYS PRO GLN CYS SEQRES 4 X 636 GLY PHE GLY GLU THR GLY LEU CYS CYS ARG HIS CYS LEU SEQRES 5 X 636 GLN GLY PRO CYS ARG ILE ASN PRO PHE GLY ASP GLU PRO SEQRES 6 X 636 LYS VAL GLY ILE CYS GLY ALA THR ALA GLU VAL ILE VAL SEQRES 7 X 636 ALA ARG GLY LEU ASP ARG SER ILE ALA ALA GLY ALA ALA SEQRES 8 X 636 GLY HIS SER GLY HIS ALA LYS HIS LEU ALA HIS THR LEU SEQRES 9 X 636 LYS LYS ALA VAL GLN GLY LYS ALA ALA SER TYR MET ILE SEQRES 10 X 636 LYS ASP ARG THR LYS LEU HIS SER ILE ALA LYS ARG LEU SEQRES 11 X 636 GLY ILE PRO THR GLU GLY GLN LYS ASP GLU ASP ILE ALA SEQRES 12 X 636 LEU GLU VAL ALA LYS ALA ALA LEU ALA ASP PHE HIS GLU SEQRES 13 X 636 LYS ASP THR PRO VAL LEU TRP VAL THR THR VAL LEU PRO SEQRES 14 X 636 PRO SER ARG VAL LYS VAL LEU SER ALA HIS GLY LEU ILE SEQRES 15 X 636 PRO ALA GLY ILE ASP HIS GLU ILE ALA GLU ILE MET HIS SEQRES 16 X 636 ARG THR SER MET GLY CYS ASP ALA ASP ALA GLN ASN LEU SEQRES 17 X 636 LEU LEU GLY GLY LEU ARG CYS SER LEU ALA ASP LEU ALA SEQRES 18 X 636 GLY CYS TYR MET GLY THR ASP LEU ALA ASP ILE LEU PHE SEQRES 19 X 636 GLY THR PRO ALA PRO VAL VAL THR GLU SER ASN LEU GLY SEQRES 20 X 636 VAL LEU LYS ALA ASP ALA VAL ASN VAL ALA VAL HIS GLY SEQRES 21 X 636 HIS ASN PRO VAL LEU SER ASP ILE ILE VAL SER VAL SER SEQRES 22 X 636 LYS GLU MET GLU ASN GLU ALA ARG ALA ALA GLY ALA THR SEQRES 23 X 636 GLY ILE ASN VAL VAL GLY ILE CSO CYS THR GLY ASN GLU SEQRES 24 X 636 VAL LEU MET ARG HIS GLY ILE PRO ALA CYS THR HIS SER SEQRES 25 X 636 VAL SER GLN GLU MET ALA MET ILE THR GLY ALA LEU ASP SEQRES 26 X 636 ALA MET ILE LEU ASP TYR GLN CYS ILE GLN PRO SER VAL SEQRES 27 X 636 ALA THR ILE ALA GLU CYS THR GLY THR THR VAL ILE THR SEQRES 28 X 636 THR MET GLU MET SER LYS ILE THR GLY ALA THR HIS VAL SEQRES 29 X 636 ASN PHE ALA GLU GLU ALA ALA VAL GLU ASN ALA LYS GLN SEQRES 30 X 636 ILE LEU ARG LEU ALA ILE ASP THR PHE LYS ARG ARG LYS SEQRES 31 X 636 GLY LYS PRO VAL GLU ILE PRO ASN ILE LYS THR LYS VAL SEQRES 32 X 636 VAL ALA GLY PHE SER THR GLU ALA ILE ILE ASN ALA LEU SEQRES 33 X 636 SER LYS LEU ASN ALA ASN ASP PRO LEU LYS PRO LEU ILE SEQRES 34 X 636 ASP ASN VAL VAL ASN GLY ASN ILE ARG GLY VAL CYS LEU SEQRES 35 X 636 PHE ALA GLY CYS ASN ASN VAL LYS VAL PRO GLN ASP GLN SEQRES 36 X 636 ASN PHE THR THR ILE ALA ARG LYS LEU LEU LYS GLN ASN SEQRES 37 X 636 VAL LEU VAL VAL ALA THR GLY CYS GLY ALA GLY ALA LEU SEQRES 38 X 636 MET ARG HIS GLY PHE MET ASP PRO ALA ASN VAL ASP GLU SEQRES 39 X 636 LEU CYS GLY ASP GLY LEU LYS ALA VAL LEU THR ALA ILE SEQRES 40 X 636 GLY GLU ALA ASN GLY LEU GLY GLY PRO LEU PRO PRO VAL SEQRES 41 X 636 LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ALA VAL SEQRES 42 X 636 ALA LEU VAL ALA ALA LEU ALA ASN ARG LEU GLY VAL ASP SEQRES 43 X 636 LEU ASP ARG LEU PRO VAL VAL ALA SER ALA ALA GLU ALA SEQRES 44 X 636 MET HIS GLU LYS ALA VAL ALA ILE GLY THR TRP ALA VAL SEQRES 45 X 636 THR ILE GLY LEU PRO THR HIS ILE GLY VAL LEU PRO PRO SEQRES 46 X 636 ILE THR GLY SER LEU PRO VAL THR GLN ILE LEU THR SER SEQRES 47 X 636 SER VAL LYS ASP ILE THR GLY GLY TYR PHE ILE VAL GLU SEQRES 48 X 636 LEU ASP PRO GLU THR ALA ALA ASP LYS LEU LEU ALA ALA SEQRES 49 X 636 ILE ASN GLU ARG ARG ALA GLY LEU GLY LEU PRO TRP MODRES 8ON3 CSO X 294 CYS MODIFIED RESIDUE HET CSO X 294 10 HET SF4 X1001 8 HET FES X1002 4 HET VV2 X1003 7 HET FE2 X1004 2 HET PEG X1005 17 HET FE X1006 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM VV2 FE-S CLUSTER HETNAM FE2 FE (II) ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FE FE (III) ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 VV2 FE4 S3 FORMUL 5 FE2 FE 2+ FORMUL 6 PEG C4 H10 O3 FORMUL 7 FE FE 3+ FORMUL 8 HOH *400(H2 O) HELIX 1 AA1 ASP X 10 GLY X 24 1 15 HELIX 2 AA2 THR X 27 LYS X 36 1 10 HELIX 3 AA3 CYS X 39 GLY X 45 1 7 HELIX 4 AA4 THR X 73 VAL X 108 1 36 HELIX 5 AA5 ASP X 119 GLY X 131 1 13 HELIX 6 AA6 LYS X 138 ASP X 153 1 16 HELIX 7 AA7 VAL X 161 THR X 166 1 6 HELIX 8 AA8 PRO X 169 HIS X 179 1 11 HELIX 9 AA9 GLY X 185 THR X 197 1 13 HELIX 10 AB1 ASP X 204 GLY X 235 1 32 HELIX 11 AB2 ASN X 245 LEU X 249 5 5 HELIX 12 AB3 LEU X 265 MET X 276 1 12 HELIX 13 AB4 MET X 276 ALA X 283 1 8 HELIX 14 AB5 CSO X 294 GLY X 305 1 12 HELIX 15 AB6 HIS X 311 VAL X 313 5 3 HELIX 16 AB7 SER X 314 THR X 321 1 8 HELIX 17 AB8 SER X 337 GLY X 346 1 10 HELIX 18 AB9 ALA X 367 GLU X 369 5 3 HELIX 19 AC1 ALA X 370 ARG X 389 1 20 HELIX 20 AC2 SER X 408 LYS X 418 1 11 HELIX 21 AC3 LEU X 425 GLY X 435 1 11 HELIX 22 AC4 ASP X 454 GLN X 467 1 14 HELIX 23 AC5 GLY X 475 HIS X 484 1 10 HELIX 24 AC6 ASP X 488 ALA X 490 5 3 HELIX 25 AC7 ASN X 491 CYS X 496 1 6 HELIX 26 AC8 GLY X 497 ASN X 511 1 15 HELIX 27 AC9 ASP X 528 GLY X 544 1 17 HELIX 28 AD1 ASP X 546 LEU X 550 5 5 HELIX 29 AD2 HIS X 561 ILE X 574 1 14 HELIX 30 AD3 SER X 589 SER X 598 1 10 HELIX 31 AD4 VAL X 600 GLY X 605 1 6 HELIX 32 AD5 ASP X 613 LEU X 632 1 20 SHEET 1 AA1 2 CYS X 47 CYS X 48 0 SHEET 2 AA1 2 CYS X 56 ARG X 57 -1 O CYS X 56 N CYS X 48 SHEET 1 AA2 2 VAL X 240 SER X 244 0 SHEET 2 AA2 2 THR X 401 ALA X 405 -1 O VAL X 403 N THR X 242 SHEET 1 AA3 6 ALA X 308 THR X 310 0 SHEET 2 AA3 6 ILE X 288 ILE X 293 1 N GLY X 292 O CYS X 309 SHEET 3 AA3 6 VAL X 254 HIS X 259 1 N VAL X 254 O ASN X 289 SHEET 4 AA3 6 LEU X 324 LEU X 329 1 O ILE X 328 N ALA X 257 SHEET 5 AA3 6 THR X 348 THR X 351 1 O ILE X 350 N LEU X 329 SHEET 6 AA3 6 THR X 362 HIS X 363 1 O THR X 362 N THR X 351 SHEET 1 AA4 6 VAL X 520 GLY X 524 0 SHEET 2 AA4 6 LEU X 470 THR X 474 1 N ALA X 473 O MET X 523 SHEET 3 AA4 6 VAL X 440 PHE X 443 1 N PHE X 443 O VAL X 472 SHEET 4 AA4 6 VAL X 552 ALA X 556 1 O SER X 555 N LEU X 442 SHEET 5 AA4 6 PRO X 577 ILE X 580 1 O HIS X 579 N ALA X 556 SHEET 6 AA4 6 TYR X 607 VAL X 610 1 O TYR X 607 N THR X 578 LINK C ILE X 293 N CSO X 294 1555 1555 1.33 LINK C CSO X 294 N ACYS X 295 1555 1555 1.34 LINK C CSO X 294 N BCYS X 295 1555 1555 1.34 LINK SG CYS X 39 FE2 FES X1002 1555 1555 2.40 LINK SG CYS X 47 FE1 FES X1002 1555 1555 2.33 LINK SG CYS X 48 FE3 SF4 X1001 1555 1555 2.26 LINK SG CYS X 51 FE4 SF4 X1001 1555 1555 2.38 LINK SG CYS X 56 FE1 SF4 X1001 1555 1555 2.37 LINK SG CYS X 70 FE2 SF4 X1001 1555 1555 2.36 LINK NE2 HIS X 261 FE AFE2 X1004 1555 1555 1.98 LINK NE2 HIS X 261 FE BFE2 X1004 1555 1555 2.62 LINK SG CSO X 294 FE FE X1006 1555 1555 2.52 LINK SG BCYS X 295 FE BFE2 X1004 1555 1555 2.62 LINK SG CYS X 333 FE2 VV2 X1003 1555 1555 2.39 LINK SG CYS X 446 FE4 VV2 X1003 1555 1555 2.44 LINK SG CYS X 476 FE3 VV2 X1003 1555 1555 2.53 LINK SG BCYS X 526 FE5 VV2 X1003 1555 1555 2.07 LINK FE5 VV2 X1003 O HOH X1103 1555 1555 2.02 LINK FE5 VV2 X1003 O HOH X1415 1555 1555 2.02 LINK FE2 VV2 X1003 O HOH X1418 1555 1555 2.45 LINK FE3 VV2 X1003 O HOH X1418 1555 1555 2.04 LINK FE AFE2 X1004 O HOH X1103 1555 1555 2.57 LINK FE BFE2 X1004 O HOH X1103 1555 1555 2.57 LINK FE AFE2 X1004 O HOH X1418 1555 1555 1.83 LINK FE BFE2 X1004 O HOH X1418 1555 1555 2.28 CISPEP 1 LYS X 36 PRO X 37 0 -5.01 CISPEP 2 GLY X 54 PRO X 55 0 7.31 CISPEP 3 GLU X 64 PRO X 65 0 6.11 CRYST1 110.920 75.250 70.870 90.00 111.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009016 0.000000 0.003477 0.00000 SCALE2 0.000000 0.013289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015123 0.00000 CONECT 588 9629 CONECT 687 9628 CONECT 697 9622 CONECT 748 9623 CONECT 815 9620 CONECT 1028 9621 CONECT 3910 9639 9640 CONECT 4387 4404 CONECT 4404 4387 4405 CONECT 4405 4404 4406 4408 4411 CONECT 4406 4405 4407 4412 4413 CONECT 4407 4406 4410 9658 CONECT 4408 4405 4409 4414 4415 CONECT 4409 4408 CONECT 4410 4407 CONECT 4411 4405 CONECT 4412 4406 CONECT 4413 4406 CONECT 4414 4408 CONECT 4415 4408 CONECT 4425 9640 CONECT 4993 9635 CONECT 6744 9636 CONECT 7222 9637 CONECT 7930 9638 CONECT 9620 815 9625 9626 9627 CONECT 9621 1028 9624 9626 9627 CONECT 9622 697 9624 9625 9627 CONECT 9623 748 9624 9625 9626 CONECT 9624 9621 9622 9623 CONECT 9625 9620 9622 9623 CONECT 9626 9620 9621 9623 CONECT 9627 9620 9621 9622 CONECT 9628 687 9630 9631 CONECT 9629 588 9630 9631 CONECT 9630 9628 9629 CONECT 9631 9628 9629 CONECT 9632 9636 9637 9638 CONECT 9633 9635 9636 9637 9638 CONECT 9634 9635 9637 9638 CONECT 9635 4993 9633 9634 9978 CONECT 9636 6744 9632 9633 CONECT 9637 7222 9632 9633 9634 CONECT 9637 9978 CONECT 9638 7930 9632 9633 9634 CONECT 9638 9661 9975 CONECT 9639 3910 9661 9978 CONECT 9640 3910 4425 9661 9978 CONECT 9641 9642 9643 9648 9649 CONECT 9642 9641 9650 CONECT 9643 9641 9644 9651 9652 CONECT 9644 9643 9645 CONECT 9645 9644 9646 9653 9654 CONECT 9646 9645 9647 9655 9656 CONECT 9647 9646 9657 CONECT 9648 9641 CONECT 9649 9641 CONECT 9650 9642 CONECT 9651 9643 CONECT 9652 9643 CONECT 9653 9645 CONECT 9654 9645 CONECT 9655 9646 CONECT 9656 9646 CONECT 9657 9647 CONECT 9658 4407 CONECT 9661 9638 9639 9640 CONECT 9975 9638 CONECT 9978 9635 9637 9639 9640 MASTER 444 0 7 32 16 0 0 6 5083 1 69 49 END