HEADER ANTIBIOTIC 04-APR-23 8ONU TITLE SOLUTION STRUCTURE OF THANATIN ANALOGUE 7 IN COMPLEX WITH LPTAM(AB)1.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THANATIN-LIKE DERIVATIVE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: VAN = VALINE CAPPED WITH GUANIDINE GROUP, HYP = COMPND 10 HYDROXYPROLINE, LE1 = PENICILLAMINE, DAB = DIAMINOBUTYRIC ACID, 4FO = COMPND 11 D-DAB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 STRAIN: DH5A; SOURCE 5 GENE: LPTA, A7M90_06575, AB945B12_03460, ABCAM1_1308, SOURCE 6 ABKPCSM17A_03058, ABR2091_1232, ABUW_2646, ACX61_12145, APD31_17240, SOURCE 7 AUO97_13655, AYR68_06125, B7L45_12725, B9X95_15845, BAA1790NC_1298, SOURCE 8 C6N18_07050, CBE85_10985, CBL15_11855, CSB70_1068, CTZ19_12250, SOURCE 9 D8O08_008535, DLI71_18810, DOL94_11450, DVA69_07650, E1A86_07710, SOURCE 10 E1A87_18595, EA686_18135, EA706_10880, EA720_004080, EA722_14830, SOURCE 11 EGM95_13940, EKS29_04650, EWO96_18090, F2P40_12435, F4T85_13200, SOURCE 12 FDN00_13585, FE003_12605, FJU36_12005, FJU42_14040, FR761_07300, SOURCE 13 G3N53_13510, GNY86_07325, GSE42_07235, H0529_08305, HB367_02715, SOURCE 14 HBK86_04580, HIN86_12575, IAG11_06185, IMO23_06220, ITE13_09135, SOURCE 15 NCTC13305_01082, NCTC13421_02501, SAMEA104305318_02787, SOURCE 16 SAMEA104305340_03609, SAMEA104305385_03383; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 MOL_ID: 2; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: PODISUS MACULIVENTRIS; SOURCE 22 ORGANISM_COMMON: SPINED SOLDIER BUG; SOURCE 23 ORGANISM_TAXID: 29025 KEYWDS STRUCTURE FROM CYANA 3.98.13, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.OI,K.MOEHLE,O.ZERBE REVDAT 4 29-NOV-23 8ONU 1 REMARK REVDAT 3 15-NOV-23 8ONU 1 LINK ATOM REVDAT 2 21-JUN-23 8ONU 1 JRNL REVDAT 1 14-JUN-23 8ONU 0 JRNL AUTH K.K.OI,K.MOEHLE,M.SCHUSTER,O.ZERBE JRNL TITL EARLY MOLECULAR INSIGHTS INTO THANATIN ANALOGUES BINDING TO JRNL TITL 2 A. BAUMANNII LPTA. JRNL REF MOLECULES V. 28 2023 JRNL REFN ESSN 1420-3049 JRNL PMID 37298811 JRNL DOI 10.3390/MOLECULES28114335 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MOE 2020.09 REMARK 3 AUTHORS : CHEMICAL COMPUTING GROUP ULC, 1010 SHERBOOKE ST REMARK 3 WEST, SUITE #910, MONTREAL, QC, CANADA, H3A 2R7, REMARK 3 2022 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ONU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292126646. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-13C; U-15N] A. REMARK 210 BAUMANNII LIPOPOLYSACCHARIDE REMARK 210 TRANSPORT PROTEIN A (LPTA) (33- REMARK 210 164), 500 UM THANATIN ANALOGUE 7, REMARK 210 50 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D HBHA(CO) REMARK 210 NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98, CARA, CCPNMR REMARK 210 ANALYSIS 2.5 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 TYR B 210 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG B 220 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG B 213 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 4 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 5 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 7 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 8 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 10 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 11 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 11 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 11 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 11 ARG B 220 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG B 220 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 TYR A 119 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 13 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 13 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 14 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 14 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 14 ARG B 220 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 15 ARG B 220 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 16 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 16 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 16 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 35 14.09 -148.87 REMARK 500 1 GLN A 40 -41.30 -143.38 REMARK 500 1 GLN A 67 -34.79 -159.50 REMARK 500 1 MET A 70 96.58 -69.36 REMARK 500 1 ARG A 85 12.14 57.69 REMARK 500 1 GLU A 156 -15.16 58.99 REMARK 500 1 DAB B 214 -25.81 55.73 REMARK 500 2 LYS A 53 42.11 -73.36 REMARK 500 2 THR A 54 -32.46 178.72 REMARK 500 2 ASN A 62 83.15 44.53 REMARK 500 2 THR A 69 -0.55 66.20 REMARK 500 2 LYS A 98 138.15 -34.00 REMARK 500 2 THR A 123 -9.45 -146.74 REMARK 500 2 MET A 150 35.97 -68.49 REMARK 500 2 ASN A 151 -40.03 -154.98 REMARK 500 2 LYS A 152 119.83 -162.20 REMARK 500 2 ALA A 157 42.39 -153.36 REMARK 500 2 ARG B 213 38.10 -79.85 REMARK 500 2 DAB B 214 -16.12 -140.71 REMARK 500 3 SER A 35 17.09 59.57 REMARK 500 3 THR A 54 -4.59 -144.40 REMARK 500 3 ALA A 74 -158.54 -153.91 REMARK 500 3 ASP A 106 -60.77 -91.37 REMARK 500 3 ASN A 144 -37.61 63.94 REMARK 500 3 MET A 150 34.01 -86.19 REMARK 500 3 GLN A 158 107.48 -55.53 REMARK 500 3 SER A 161 40.26 -73.39 REMARK 500 3 ARG B 213 46.90 -75.49 REMARK 500 3 DAB B 214 -17.18 -167.50 REMARK 500 3 THR B 215 -18.24 -145.08 REMARK 500 3 ARG B 220 -120.48 -61.70 REMARK 500 4 SER A 35 34.72 -94.38 REMARK 500 4 GLN A 40 -82.35 -125.90 REMARK 500 4 LYS A 53 9.53 -68.63 REMARK 500 4 ASN A 62 97.57 57.32 REMARK 500 4 ILE A 65 76.51 -153.25 REMARK 500 4 ALA A 157 33.66 -84.63 REMARK 500 4 THR B 215 -12.82 -142.88 REMARK 500 4 4FO B 216 -28.70 77.11 REMARK 500 5 LEU A 33 83.24 49.76 REMARK 500 5 SER A 35 39.59 -75.89 REMARK 500 5 ARG A 37 11.03 -68.82 REMARK 500 5 ASN A 51 62.38 -156.23 REMARK 500 5 LYS A 53 -9.74 -59.31 REMARK 500 5 THR A 54 13.76 -141.98 REMARK 500 5 ASN A 62 105.94 60.42 REMARK 500 5 ARG A 85 90.33 51.59 REMARK 500 5 THR A 123 21.71 -144.86 REMARK 500 5 MET A 150 43.73 -80.07 REMARK 500 5 ASN A 151 -99.33 -153.62 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 35 ASP A 36 1 -148.89 REMARK 500 ALA A 74 ASP A 75 1 146.86 REMARK 500 ASN B 212 ARG B 213 1 145.47 REMARK 500 ARG B 213 DAB B 214 1 -149.10 REMARK 500 GLY A 32 LEU A 33 2 138.39 REMARK 500 GLU A 113 GLY A 114 2 144.34 REMARK 500 DAB B 219 ARG B 220 2 141.74 REMARK 500 ILE A 109 ALA A 110 3 131.78 REMARK 500 DAB B 219 ARG B 220 3 135.93 REMARK 500 ARG B 220 TYR B 221 3 138.94 REMARK 500 SER A 139 SER A 140 4 148.19 REMARK 500 ILE A 109 ALA A 110 5 126.74 REMARK 500 ARG A 47 ALA A 48 6 149.05 REMARK 500 ALA A 121 ASP A 122 6 148.55 REMARK 500 SER A 161 SER A 162 6 148.40 REMARK 500 DAB B 219 ARG B 220 6 148.57 REMARK 500 ALA A 74 ASP A 75 7 147.97 REMARK 500 SER A 97 LYS A 98 7 -149.94 REMARK 500 DAB B 219 ARG B 220 7 149.09 REMARK 500 ARG B 220 TYR B 221 7 137.36 REMARK 500 ILE A 109 ALA A 110 8 143.97 REMARK 500 DAB B 219 ARG B 220 8 -129.73 REMARK 500 ALA A 74 ASP A 75 9 147.72 REMARK 500 ASN A 163 ARG A 164 10 136.32 REMARK 500 DAB B 219 ARG B 220 10 142.48 REMARK 500 GLY A 32 LEU A 33 12 137.44 REMARK 500 SER A 97 LYS A 98 12 -142.43 REMARK 500 SER A 162 ASN A 163 12 147.99 REMARK 500 DAB B 219 ARG B 220 12 149.48 REMARK 500 GLN A 40 ILE A 41 13 148.75 REMARK 500 LEU A 134 TYR A 135 13 147.92 REMARK 500 GLY A 32 LEU A 33 14 137.28 REMARK 500 VAL A 63 VAL A 64 14 144.41 REMARK 500 DAB B 219 ARG B 220 14 147.13 REMARK 500 ARG A 95 PRO A 96 15 32.50 REMARK 500 SER A 97 LYS A 98 15 -134.43 REMARK 500 ASP A 137 GLY A 138 15 -149.83 REMARK 500 DAB B 219 ARG B 220 15 124.55 REMARK 500 SER A 97 LYS A 98 17 -142.44 REMARK 500 SER A 139 SER A 140 17 142.09 REMARK 500 LYS A 147 TYR A 148 17 149.37 REMARK 500 DAB B 219 ARG B 220 17 143.28 REMARK 500 SER A 97 LYS A 98 18 -147.05 REMARK 500 ALA A 121 ASP A 122 18 148.71 REMARK 500 DAB B 219 ARG B 220 18 148.68 REMARK 500 ARG B 220 TYR B 221 18 145.42 REMARK 500 SER A 97 LYS A 98 19 -147.79 REMARK 500 DAB B 219 ARG B 220 19 148.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG B 220 0.08 SIDE CHAIN REMARK 500 2 ARG A 47 0.09 SIDE CHAIN REMARK 500 2 ARG A 85 0.13 SIDE CHAIN REMARK 500 2 ARG A 95 0.09 SIDE CHAIN REMARK 500 2 ARG A 164 0.11 SIDE CHAIN REMARK 500 2 TYR B 221 0.08 SIDE CHAIN REMARK 500 4 TYR A 119 0.08 SIDE CHAIN REMARK 500 5 ARG A 37 0.13 SIDE CHAIN REMARK 500 6 ARG A 164 0.14 SIDE CHAIN REMARK 500 8 ARG A 85 0.09 SIDE CHAIN REMARK 500 8 ARG A 164 0.12 SIDE CHAIN REMARK 500 9 TYR A 135 0.11 SIDE CHAIN REMARK 500 9 TYR A 148 0.09 SIDE CHAIN REMARK 500 11 TYR A 148 0.07 SIDE CHAIN REMARK 500 11 TYR B 210 0.09 SIDE CHAIN REMARK 500 11 ARG B 213 0.09 SIDE CHAIN REMARK 500 12 ARG A 47 0.09 SIDE CHAIN REMARK 500 12 ARG A 111 0.08 SIDE CHAIN REMARK 500 13 ARG A 47 0.11 SIDE CHAIN REMARK 500 13 ARG A 95 0.08 SIDE CHAIN REMARK 500 13 ARG B 220 0.19 SIDE CHAIN REMARK 500 14 TYR A 148 0.08 SIDE CHAIN REMARK 500 15 ARG A 47 0.08 SIDE CHAIN REMARK 500 16 ARG A 37 0.15 SIDE CHAIN REMARK 500 16 TYR A 148 0.09 SIDE CHAIN REMARK 500 16 ARG A 164 0.13 SIDE CHAIN REMARK 500 16 ARG B 213 0.10 SIDE CHAIN REMARK 500 17 ARG A 47 0.09 SIDE CHAIN REMARK 500 17 TYR A 50 0.07 SIDE CHAIN REMARK 500 17 TYR A 148 0.06 SIDE CHAIN REMARK 500 19 TYR A 148 0.09 SIDE CHAIN REMARK 500 19 TYR B 210 0.09 SIDE CHAIN REMARK 500 20 ARG A 164 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 12 GLY A 32 -10.25 REMARK 500 14 GLY A 32 -10.09 REMARK 500 15 DAB B 219 -10.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QS6 RELATED DB: PDB REMARK 900 THE SAME THANATIN ANALOGUE 7 BINDING TO LPTAM OF E. COLI REMARK 900 RELATED ID: 7ZED RELATED DB: PDB REMARK 900 THE SAME THANATIN ANALOGUE 7 BINDING TO THE Q62L MUTANT LPTAM OF E. REMARK 900 COLI REMARK 900 RELATED ID: 7ZAX RELATED DB: PDB REMARK 900 THE SAME THANATIN ANALOGUE 7 BINDING TO LPTAM OF K. PNEUMONIAE REMARK 900 RELATED ID: 34802 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THANATIN ANALOGUE 7 IN COMPLEX WITH LPTAM(AB) REMARK 900 1.0 DBREF 8ONU A 33 164 UNP V5VEZ9 V5VEZ9_ACIBA 33 164 DBREF 8ONU B 206 221 UNP P55788 THAN_PODMA 6 21 SEQADV 8ONU GLY A 32 UNP V5VEZ9 EXPRESSION TAG SEQADV 8ONU THR B 209 UNP P55788 ILE 9 ENGINEERED MUTATION SEQADV 8ONU LE1 B 211 UNP P55788 CYS 11 MODIFIED RESIDUE SEQADV 8ONU DAB B 214 UNP P55788 ARG 14 MODIFIED RESIDUE SEQADV 8ONU 4FO B 216 UNP P55788 GLY 16 MODIFIED RESIDUE SEQADV 8ONU DAB B 219 UNP P55788 GLN 19 MODIFIED RESIDUE SEQADV 8ONU TYR B 221 UNP P55788 MET 21 ENGINEERED MUTATION SEQRES 1 A 133 GLY LEU PRO SER ASP ARG ASN GLN GLN ILE SER LEU VAL SEQRES 2 A 133 ALA ASP ARG ALA THR TYR ASN GLU LYS THR GLY LEU THR SEQRES 3 A 133 THR TYR THR GLY ASN VAL VAL ILE GLU GLN GLY THR MET SEQRES 4 A 133 LYS LEU GLN ALA ASP SER ILE VAL ALA THR LEU ASN SER SEQRES 5 A 133 LYS ARG GLU ILE GLN THR ILE THR ALA LYS GLY ARG PRO SEQRES 6 A 133 SER LYS PHE GLN GLN GLN ILE SER ALA ASP LYS GLY ILE SEQRES 7 A 133 ALA ARG GLY GLU GLY GLN THR ILE VAL TYR ASN ALA ASP SEQRES 8 A 133 THR GLY ILE ILE THR LEU SER GLY GLY ALA TYR LEU TYR SEQRES 9 A 133 GLN ASP GLY SER SER ILE ARG GLY ASN THR LEU LYS TYR SEQRES 10 A 133 SER MET ASN LYS GLY ASP VAL GLU ALA GLN GLY SER SER SEQRES 11 A 133 SER ASN ARG SEQRES 1 B 16 EU0 HYP ILE THR TYR LE1 ASN ARG DAB THR 4FO LYS CYS SEQRES 2 B 16 DAB ARG TYR MODRES 8ONU EU0 B 206 VAL MODIFIED RESIDUE MODRES 8ONU HYP B 207 PRO MODIFIED RESIDUE HET EU0 B 206 23 HET HYP B 207 15 HET LE1 B 211 16 HET DAB B 214 16 HET 4FO B 216 16 HET DAB B 219 16 HETNAM EU0 1-[(2~{S})-3-METHYL-1-OXIDANYLIDENE-BUTAN-2- HETNAM 2 EU0 YL]GUANIDINE HETNAM HYP 4-HYDROXYPROLINE HETNAM LE1 3-SULFANYL-L-VALINE HETNAM DAB 2,4-DIAMINOBUTYRIC ACID HETNAM 4FO (2R)-2,4-DIAMINOBUTANOIC ACID HETSYN HYP HYDROXYPROLINE HETSYN LE1 L-LE1ICILLAMINE; L-PENICILLAMINE FORMUL 2 EU0 C6 H14 N3 O2 1+ FORMUL 2 HYP C5 H9 N O3 FORMUL 2 LE1 C5 H11 N O2 S FORMUL 2 DAB 2(C4 H10 N2 O2) FORMUL 2 4FO C4 H10 N2 O2 HELIX 1 AA1 SER A 35 ARG A 37 5 3 HELIX 2 AA2 GLU A 52 GLY A 55 5 4 SHEET 1 AA1 7 ARG A 47 TYR A 50 0 SHEET 2 AA1 7 THR A 57 THR A 60 -1 O THR A 58 N THR A 49 SHEET 3 AA1 7 SER A 76 THR A 80 -1 O ALA A 79 N THR A 57 SHEET 4 AA1 7 THR A 89 LYS A 93 -1 O THR A 91 N VAL A 78 SHEET 5 AA1 7 ALA A 110 TYR A 119 -1 O TYR A 119 N ILE A 90 SHEET 6 AA1 7 ILE A 126 GLN A 136 -1 O TYR A 133 N GLU A 113 SHEET 7 AA1 7 SER A 139 LYS A 147 -1 O SER A 139 N GLN A 136 SHEET 1 AA211 ARG A 47 TYR A 50 0 SHEET 2 AA211 THR A 57 THR A 60 -1 O THR A 58 N THR A 49 SHEET 3 AA211 SER A 76 THR A 80 -1 O ALA A 79 N THR A 57 SHEET 4 AA211 THR A 89 LYS A 93 -1 O THR A 91 N VAL A 78 SHEET 5 AA211 ALA A 110 TYR A 119 -1 O TYR A 119 N ILE A 90 SHEET 6 AA211 PHE A 99 GLN A 101 -1 N GLN A 101 O ALA A 110 SHEET 7 AA211 MET A 70 GLN A 73 -1 N LYS A 71 O GLN A 100 SHEET 8 AA211 VAL A 64 GLU A 66 -1 N ILE A 65 O LEU A 72 SHEET 9 AA211 GLN A 39 ALA A 45 -1 N SER A 42 O GLU A 66 SHEET 10 AA211 HYP B 207 ASN B 212 1 O THR B 209 N LEU A 43 SHEET 11 AA211 CYS B 218 DAB B 219 -1 O DAB B 219 N TYR B 210 SSBOND 1 LE1 B 211 CYS B 218 1555 1555 2.10 LINK C EU0 B 206 N HYP B 207 1555 1555 1.35 LINK C HYP B 207 N ILE B 208 1555 1555 1.34 LINK C TYR B 210 N LE1 B 211 1555 1555 1.33 LINK C LE1 B 211 N ASN B 212 1555 1555 1.34 LINK C ARG B 213 N DAB B 214 1555 1555 1.32 LINK C DAB B 214 N THR B 215 1555 1555 1.35 LINK C THR B 215 N 4FO B 216 1555 1555 1.34 LINK C 4FO B 216 N LYS B 217 1555 1555 1.34 LINK C CYS B 218 N DAB B 219 1555 1555 1.33 LINK C DAB B 219 N ARG B 220 1555 1555 1.34 CISPEP 1 ARG A 95 PRO A 96 1 0.09 CISPEP 2 ARG A 95 PRO A 96 2 -2.82 CISPEP 3 ARG A 95 PRO A 96 3 -5.54 CISPEP 4 ARG A 95 PRO A 96 4 -1.48 CISPEP 5 ARG A 95 PRO A 96 5 -6.48 CISPEP 6 ARG A 95 PRO A 96 6 -5.54 CISPEP 7 ARG A 95 PRO A 96 7 2.78 CISPEP 8 ARG A 95 PRO A 96 8 -4.54 CISPEP 9 ARG A 95 PRO A 96 9 -3.52 CISPEP 10 ARG A 95 PRO A 96 10 10.30 CISPEP 11 ARG A 95 PRO A 96 11 -8.49 CISPEP 12 ARG A 95 PRO A 96 12 8.00 CISPEP 13 ARG A 95 PRO A 96 13 -1.00 CISPEP 14 ARG A 95 PRO A 96 14 -7.35 CISPEP 15 ARG A 95 PRO A 96 16 -6.63 CISPEP 16 ARG A 95 PRO A 96 17 -4.45 CISPEP 17 ARG A 95 PRO A 96 18 5.52 CISPEP 18 ARG A 95 PRO A 96 19 -2.48 CISPEP 19 ARG A 95 PRO A 96 20 -4.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1