HEADER TRANSFERASE 04-APR-23 8OO5 TITLE CRYSTAL STRUCTURE OF HUMAN DCAF1 WD40 REPEATS (Q1250L) IN COMPLEX WITH TITLE 2 COMPOUND 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DDB1- AND CUL4-ASSOCIATED FACTOR 1; COMPND 3 CHAIN: P; COMPND 4 SYNONYM: HIV-1 VPR-BINDING PROTEIN,VPRBP,SERINE/THREONINE-PROTEIN COMPND 5 KINASE VPRBP,VPR-INTERACTING PROTEIN; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCAF1, KIAA0800, RIP, VPRBP; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS DCAF1, LIGASE, COMPOUND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHROEDER,M.RENATUS REVDAT 1 24-MAY-23 8OO5 0 JRNL AUTH M.SCHRODER,M.RENATUS,C.R.THOMA JRNL TITL REINSTATING TARGETED PROTEIN DEGRADATION WITH DCAF1 PROTACS JRNL TITL 2 IN CRBN PROTAC RESISTANT SETTINGS JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2023.04.09.536153 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2532 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2252 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3434 ; 2.079 ; 1.685 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5170 ; 1.387 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 9.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;35.262 ;22.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;16.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.046 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2852 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1205 ; 2.608 ; 2.961 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1203 ; 2.587 ; 2.954 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1505 ; 4.173 ; 4.422 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1505 ; 4.158 ; 4.422 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1327 ; 3.034 ; 3.422 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1328 ; 3.033 ; 3.422 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1929 ; 4.641 ; 4.974 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2690 ; 6.821 ;34.498 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2685 ; 6.813 ;34.434 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -15.286 -31.859 11.600 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0055 REMARK 3 T33: 0.0103 T12: -0.0122 REMARK 3 T13: 0.0090 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.8024 L22: 1.4815 REMARK 3 L33: 1.1190 L12: -0.8440 REMARK 3 L13: 0.2522 L23: 0.4139 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.0436 S13: -0.1480 REMARK 3 S21: -0.0536 S22: 0.0097 S23: 0.0725 REMARK 3 S31: 0.0765 S32: -0.0478 S33: -0.0054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8OO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 52.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : 0.27100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 22.90 REMARK 200 R MERGE FOR SHELL (I) : 2.74800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.91M LISO4, 0.1M TRIS PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.04400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.08800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.06600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 195.11000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.02200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.04400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 156.08800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 195.11000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.06600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.02200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH P1560 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY P 1076 REMARK 465 GLY P 1077 REMARK 465 GLY P 1078 REMARK 465 ARG P 1079 REMARK 465 ASP P 1316 REMARK 465 ASP P 1317 REMARK 465 GLU P 1318 REMARK 465 ASP P 1319 REMARK 465 ASP P 1320 REMARK 465 LEU P 1321 REMARK 465 MET P 1322 REMARK 465 GLU P 1323 REMARK 465 GLU P 1324 REMARK 465 ARG P 1325 REMARK 465 MET P 1326 REMARK 465 ARG P 1391 REMARK 465 GLN P 1392 REMARK 465 ARG P 1393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN P1090 CG OD1 ND2 REMARK 470 ASP P1092 CG OD1 OD2 REMARK 470 GLU P1093 CG CD OE1 OE2 REMARK 470 LYS P1167 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG P 1247 O HOH P 1501 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG P1298 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN P1090 -5.86 76.71 REMARK 500 ALA P1100 134.39 -170.96 REMARK 500 TRP P1156 64.93 -152.34 REMARK 500 SER P1168 -65.17 87.90 REMARK 500 ASN P1276 -115.51 60.33 REMARK 500 LEU P1378 -74.08 -61.88 REMARK 500 MET P1380 154.27 -49.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OO5 P 1079 1393 UNP Q9Y4B6 DCAF1_HUMAN 1079 1393 SEQADV 8OO5 GLY P 1076 UNP Q9Y4B6 EXPRESSION TAG SEQADV 8OO5 GLY P 1077 UNP Q9Y4B6 EXPRESSION TAG SEQADV 8OO5 GLY P 1078 UNP Q9Y4B6 EXPRESSION TAG SEQADV 8OO5 LEU P 1250 UNP Q9Y4B6 GLN 1250 ENGINEERED MUTATION SEQRES 1 P 318 GLY GLY GLY ARG PHE ARG PRO ILE SER VAL PHE ARG GLU SEQRES 2 P 318 ALA ASN GLU ASP GLU SER GLY PHE THR CYS CYS ALA PHE SEQRES 3 P 318 SER ALA ARG GLU ARG PHE LEU MET LEU GLY THR CYS THR SEQRES 4 P 318 GLY GLN LEU LYS LEU TYR ASN VAL PHE SER GLY GLN GLU SEQRES 5 P 318 GLU ALA SER TYR ASN CYS HIS ASN SER ALA ILE THR HIS SEQRES 6 P 318 LEU GLU PRO SER ARG ASP GLY SER LEU LEU LEU THR SER SEQRES 7 P 318 ALA THR TRP SER GLN PRO LEU SER ALA LEU TRP GLY MET SEQRES 8 P 318 LYS SER VAL PHE ASP MET LYS HIS SER PHE THR GLU ASP SEQRES 9 P 318 HIS TYR VAL GLU PHE SER LYS HIS SER GLN ASP ARG VAL SEQRES 10 P 318 ILE GLY THR LYS GLY ASP ILE ALA HIS ILE TYR ASP ILE SEQRES 11 P 318 GLN THR GLY ASN LYS LEU LEU THR LEU PHE ASN PRO ASP SEQRES 12 P 318 LEU ALA ASN ASN TYR LYS ARG ASN CYS ALA THR PHE ASN SEQRES 13 P 318 PRO THR ASP ASP LEU VAL LEU ASN ASP GLY VAL LEU TRP SEQRES 14 P 318 ASP VAL ARG SER ALA LEU ALA ILE HIS LYS PHE ASP LYS SEQRES 15 P 318 PHE ASN MET ASN ILE SER GLY VAL PHE HIS PRO ASN GLY SEQRES 16 P 318 LEU GLU VAL ILE ILE ASN THR GLU ILE TRP ASP LEU ARG SEQRES 17 P 318 THR PHE HIS LEU LEU HIS THR VAL PRO ALA LEU ASP GLN SEQRES 18 P 318 CYS ARG VAL VAL PHE ASN HIS THR GLY THR VAL MET TYR SEQRES 19 P 318 GLY ALA MET LEU GLN ALA ASP ASP GLU ASP ASP LEU MET SEQRES 20 P 318 GLU GLU ARG MET LYS SER PRO PHE GLY SER SER PHE ARG SEQRES 21 P 318 THR PHE ASN ALA THR ASP TYR LYS PRO ILE ALA THR ILE SEQRES 22 P 318 ASP VAL LYS ARG ASN ILE PHE ASP LEU CYS THR ASP THR SEQRES 23 P 318 LYS ASP CYS TYR LEU ALA VAL ILE GLU ASN GLN GLY SER SEQRES 24 P 318 MET ASP ALA LEU ASN MET ASP THR VAL CYS ARG LEU TYR SEQRES 25 P 318 GLU VAL GLY ARG GLN ARG HET VUF P1401 36 HET VUF P1402 36 HET EDO P1403 4 HET EDO P1404 4 HET EDO P1405 4 HET EDO P1406 4 HETNAM VUF 1-[4-[4-(2-AZANYLETHYLAMINO)-2-[1-(4-CHLOROPHENYL) HETNAM 2 VUF CYCLOHEXYL]QUINAZOLIN-7-YL]PIPERAZIN-1-YL]ETHANONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 VUF 2(C28 H35 CL N6 O) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *77(H2 O) HELIX 1 AA1 PRO P 1292 ASP P 1295 5 4 SHEET 1 AA1 4 ARG P1081 PHE P1086 0 SHEET 2 AA1 4 THR P1382 GLU P1388 -1 O CYS P1384 N PHE P1086 SHEET 3 AA1 4 TYR P1365 ASN P1371 -1 N VAL P1368 O ARG P1385 SHEET 4 AA1 4 ASN P1353 THR P1359 -1 N CYS P1358 O ALA P1367 SHEET 1 AA2 4 PHE P1096 PHE P1101 0 SHEET 2 AA2 4 PHE P1107 THR P1112 -1 O MET P1109 N ALA P1100 SHEET 3 AA2 4 GLN P1116 ASN P1121 -1 O TYR P1120 N LEU P1108 SHEET 4 AA2 4 GLU P1127 ASN P1132 -1 O GLU P1128 N LEU P1119 SHEET 1 AA3 4 ILE P1138 PRO P1143 0 SHEET 2 AA3 4 LEU P1149 ALA P1154 -1 O LEU P1151 N GLU P1142 SHEET 3 AA3 4 SER P1161 GLY P1165 -1 O TRP P1164 N LEU P1150 SHEET 4 AA3 4 ASP P1171 PHE P1176 -1 O LYS P1173 N LEU P1163 SHEET 1 AA4 4 TYR P1181 PHE P1184 0 SHEET 2 AA4 4 ARG P1191 LYS P1196 -1 O ILE P1193 N GLU P1183 SHEET 3 AA4 4 ILE P1199 ASP P1204 -1 O TYR P1203 N VAL P1192 SHEET 4 AA4 4 LYS P1210 LEU P1214 -1 O LEU P1214 N ALA P1200 SHEET 1 AA5 4 THR P1229 PHE P1230 0 SHEET 2 AA5 4 LEU P1236 ASN P1239 -1 O LEU P1238 N THR P1229 SHEET 3 AA5 4 VAL P1242 ASP P1245 -1 O TRP P1244 N VAL P1237 SHEET 4 AA5 4 LEU P1250 LYS P1254 -1 O HIS P1253 N LEU P1243 SHEET 1 AA6 4 VAL P1265 PHE P1266 0 SHEET 2 AA6 4 GLU P1272 ILE P1275 -1 O ILE P1274 N VAL P1265 SHEET 3 AA6 4 GLU P1278 ASP P1281 -1 O TRP P1280 N VAL P1273 SHEET 4 AA6 4 LEU P1287 THR P1290 -1 O LEU P1288 N ILE P1279 SHEET 1 AA7 4 CYS P1297 PHE P1301 0 SHEET 2 AA7 4 VAL P1307 LEU P1313 -1 O TYR P1309 N VAL P1300 SHEET 3 AA7 4 PHE P1330 ASN P1338 -1 O ARG P1335 N GLY P1310 SHEET 4 AA7 4 PRO P1344 ASP P1349 -1 O ILE P1345 N THR P1336 CISPEP 1 GLN P 1158 PRO P 1159 0 3.86 CRYST1 81.577 81.577 234.132 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012258 0.007077 0.000000 0.00000 SCALE2 0.000000 0.014155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004271 0.00000