HEADER TRANSFERASE 06-APR-23 8OOV TITLE HUMAN NME-1 IN COMPLEX WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE A; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NDK A,NDP KINASE A,GRANZYME A-ACTIVATED DNASE,GAAD, COMPND 5 METASTASIS INHIBITION FACTOR NM23,NM23-H1,TUMOR METASTATIC PROCESS- COMPND 6 ASSOCIATED PROTEIN; COMPND 7 EC: 2.7.4.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NME1, NDPKA, NM23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSIDE DIPHOSPHATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GOUGE,H.D.HRISTOV REVDAT 2 21-JUN-23 8OOV 1 JRNL REVDAT 1 07-JUN-23 8OOV 0 JRNL AUTH M.A.TOSSOUNIAN,S.D.HRISTOV,J.A.SEMELAK,B.Y.K.YU,M.BACZYNSKA, JRNL AUTH 2 Y.ZHAO,D.A.ESTRIN,M.TRUJILLO,V.FILONENKO,J.GOUGE,I.GOUT JRNL TITL A UNIQUE MODE OF COENZYME A BINDING TO THE NUCLEOTIDE JRNL TITL 2 BINDING POCKET OF HUMAN METASTASIS SUPPRESSOR NME1. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37298313 JRNL DOI 10.3390/IJMS24119359 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (21-NOV-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2949 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1162 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2828 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1104 REMARK 3 BIN R VALUE (WORKING SET) : 0.2809 REMARK 3 BIN FREE R VALUE : 0.3226 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 512 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.15470 REMARK 3 B22 (A**2) : 1.89750 REMARK 3 B33 (A**2) : -4.05220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.102 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.096 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.095 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.092 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4037 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5497 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1457 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 706 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4037 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 496 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4180 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|-4 - B|-2 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.8151 23.2621 21.1959 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: -0.0142 REMARK 3 T33: 0.0618 T12: 0.0967 REMARK 3 T13: 0.0633 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 1.6884 L22: 0.0000 REMARK 3 L33: 2.6712 L12: -0.0739 REMARK 3 L13: 0.1326 L23: -0.3143 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.3380 S13: 0.0658 REMARK 3 S21: 0.1628 S22: 0.0250 S23: -0.0374 REMARK 3 S31: -0.1157 S32: 0.0365 S33: -0.0081 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|-1 - B|81 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.1825 25.3431 11.4916 REMARK 3 T TENSOR REMARK 3 T11: -0.0160 T22: -0.0082 REMARK 3 T33: 0.0127 T12: 0.0035 REMARK 3 T13: -0.0016 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.2729 L22: 0.0000 REMARK 3 L33: 0.2267 L12: 0.1640 REMARK 3 L13: -0.0415 L23: -0.2259 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0152 S13: 0.0228 REMARK 3 S21: 0.0200 S22: 0.0007 S23: 0.0210 REMARK 3 S31: -0.0235 S32: 0.0172 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|82 - B|152 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.4853 21.3473 12.8340 REMARK 3 T TENSOR REMARK 3 T11: -0.0167 T22: -0.0104 REMARK 3 T33: 0.0053 T12: 0.0069 REMARK 3 T13: 0.0050 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.3169 L22: 0.3555 REMARK 3 L33: 0.2084 L12: 0.2274 REMARK 3 L13: 0.1635 L23: 0.1801 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0481 S13: 0.0261 REMARK 3 S21: 0.0337 S22: -0.0064 S23: 0.0197 REMARK 3 S31: 0.0121 S32: -0.0205 S33: 0.0281 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { C|2 - C|41 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.9768 -3.0709 10.0813 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: -0.0121 REMARK 3 T33: -0.0038 T12: 0.0147 REMARK 3 T13: -0.0089 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0942 L22: 1.1201 REMARK 3 L33: 0.0000 L12: 0.2343 REMARK 3 L13: 0.0743 L23: 0.0829 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.0217 S13: 0.0146 REMARK 3 S21: -0.0209 S22: -0.0312 S23: -0.0525 REMARK 3 S31: 0.0300 S32: 0.0066 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { C|42 - C|66 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.2241 -20.3862 20.8865 REMARK 3 T TENSOR REMARK 3 T11: 0.0141 T22: -0.0413 REMARK 3 T33: -0.0162 T12: 0.0241 REMARK 3 T13: -0.0109 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.3536 L22: 1.0272 REMARK 3 L33: 2.1052 L12: 0.1269 REMARK 3 L13: -1.5277 L23: -0.7492 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.1159 S13: -0.0817 REMARK 3 S21: -0.0155 S22: -0.0182 S23: -0.0428 REMARK 3 S31: 0.0327 S32: 0.0033 S33: -0.0263 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { C|67 - C|152 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.2332 -3.4497 15.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: -0.0218 REMARK 3 T33: -0.0123 T12: 0.0172 REMARK 3 T13: -0.0208 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0696 L22: 0.7060 REMARK 3 L33: 0.2224 L12: -0.0905 REMARK 3 L13: -0.0532 L23: -0.3688 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.0368 S13: 0.0073 REMARK 3 S21: 0.0397 S22: -0.0051 S23: -0.0211 REMARK 3 S31: 0.0264 S32: 0.0203 S33: 0.0210 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|1 - A|41 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.6713 -5.5777 4.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: -0.0171 REMARK 3 T33: -0.0047 T12: -0.0202 REMARK 3 T13: 0.0030 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.3149 L22: 0.8556 REMARK 3 L33: 0.4273 L12: -0.4639 REMARK 3 L13: 0.4544 L23: -0.2455 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.0409 S13: -0.0015 REMARK 3 S21: 0.0441 S22: -0.0209 S23: 0.0254 REMARK 3 S31: 0.0630 S32: -0.0407 S33: 0.0034 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|42 - A|58 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.6536 -0.5571 12.0697 REMARK 3 T TENSOR REMARK 3 T11: -0.1249 T22: 0.0380 REMARK 3 T33: 0.0227 T12: -0.0765 REMARK 3 T13: 0.1041 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.8340 L22: 2.0854 REMARK 3 L33: 6.7687 L12: -0.8550 REMARK 3 L13: -2.3456 L23: 2.8845 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: -0.1448 S13: -0.2732 REMARK 3 S21: 0.1435 S22: -0.0272 S23: 0.4025 REMARK 3 S31: 0.1569 S32: -0.2832 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|59 - A|152 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.7887 -4.0474 10.2856 REMARK 3 T TENSOR REMARK 3 T11: -0.0021 T22: -0.0118 REMARK 3 T33: -0.0052 T12: -0.0250 REMARK 3 T13: 0.0252 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.4992 L22: 0.2738 REMARK 3 L33: 0.3503 L12: -0.2785 REMARK 3 L13: -0.0046 L23: 0.1570 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0527 S13: -0.0086 REMARK 3 S21: 0.0841 S22: -0.0134 S23: 0.0260 REMARK 3 S31: 0.0625 S32: -0.0881 S33: 0.0014 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.08100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% MPD, 100MM MES PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.05950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.50600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.05950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.50600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.50600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.05950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.50600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.05950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 449 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 473 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 474 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 471 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 116 -23.11 58.57 REMARK 500 ILE B 116 -24.22 62.77 REMARK 500 ILE C 116 -25.88 62.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OOV A 1 152 UNP P15531 NDKA_HUMAN 1 152 DBREF 8OOV B 1 152 UNP P15531 NDKA_HUMAN 1 152 DBREF 8OOV C 1 152 UNP P15531 NDKA_HUMAN 1 152 SEQADV 8OOV MET A -19 UNP P15531 INITIATING METHIONINE SEQADV 8OOV GLY A -18 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER A -17 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER A -16 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A -15 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A -14 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A -13 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A -12 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A -11 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A -10 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER A -9 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER A -8 UNP P15531 EXPRESSION TAG SEQADV 8OOV GLY A -7 UNP P15531 EXPRESSION TAG SEQADV 8OOV LEU A -6 UNP P15531 EXPRESSION TAG SEQADV 8OOV VAL A -5 UNP P15531 EXPRESSION TAG SEQADV 8OOV PRO A -4 UNP P15531 EXPRESSION TAG SEQADV 8OOV ARG A -3 UNP P15531 EXPRESSION TAG SEQADV 8OOV GLY A -2 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER A -1 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS A 0 UNP P15531 EXPRESSION TAG SEQADV 8OOV MET B -19 UNP P15531 INITIATING METHIONINE SEQADV 8OOV GLY B -18 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER B -17 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER B -16 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B -15 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B -14 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B -13 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B -12 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B -11 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B -10 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER B -9 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER B -8 UNP P15531 EXPRESSION TAG SEQADV 8OOV GLY B -7 UNP P15531 EXPRESSION TAG SEQADV 8OOV LEU B -6 UNP P15531 EXPRESSION TAG SEQADV 8OOV VAL B -5 UNP P15531 EXPRESSION TAG SEQADV 8OOV PRO B -4 UNP P15531 EXPRESSION TAG SEQADV 8OOV ARG B -3 UNP P15531 EXPRESSION TAG SEQADV 8OOV GLY B -2 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER B -1 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS B 0 UNP P15531 EXPRESSION TAG SEQADV 8OOV MET C -19 UNP P15531 INITIATING METHIONINE SEQADV 8OOV GLY C -18 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER C -17 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER C -16 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C -15 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C -14 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C -13 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C -12 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C -11 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C -10 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER C -9 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER C -8 UNP P15531 EXPRESSION TAG SEQADV 8OOV GLY C -7 UNP P15531 EXPRESSION TAG SEQADV 8OOV LEU C -6 UNP P15531 EXPRESSION TAG SEQADV 8OOV VAL C -5 UNP P15531 EXPRESSION TAG SEQADV 8OOV PRO C -4 UNP P15531 EXPRESSION TAG SEQADV 8OOV ARG C -3 UNP P15531 EXPRESSION TAG SEQADV 8OOV GLY C -2 UNP P15531 EXPRESSION TAG SEQADV 8OOV SER C -1 UNP P15531 EXPRESSION TAG SEQADV 8OOV HIS C 0 UNP P15531 EXPRESSION TAG SEQRES 1 A 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 172 LEU VAL PRO ARG GLY SER HIS MET ALA ASN CYS GLU ARG SEQRES 3 A 172 THR PHE ILE ALA ILE LYS PRO ASP GLY VAL GLN ARG GLY SEQRES 4 A 172 LEU VAL GLY GLU ILE ILE LYS ARG PHE GLU GLN LYS GLY SEQRES 5 A 172 PHE ARG LEU VAL GLY LEU LYS PHE MET GLN ALA SER GLU SEQRES 6 A 172 ASP LEU LEU LYS GLU HIS TYR VAL ASP LEU LYS ASP ARG SEQRES 7 A 172 PRO PHE PHE ALA GLY LEU VAL LYS TYR MET HIS SER GLY SEQRES 8 A 172 PRO VAL VAL ALA MET VAL TRP GLU GLY LEU ASN VAL VAL SEQRES 9 A 172 LYS THR GLY ARG VAL MET LEU GLY GLU THR ASN PRO ALA SEQRES 10 A 172 ASP SER LYS PRO GLY THR ILE ARG GLY ASP PHE CYS ILE SEQRES 11 A 172 GLN VAL GLY ARG ASN ILE ILE HIS GLY SER ASP SER VAL SEQRES 12 A 172 GLU SER ALA GLU LYS GLU ILE GLY LEU TRP PHE HIS PRO SEQRES 13 A 172 GLU GLU LEU VAL ASP TYR THR SER CYS ALA GLN ASN TRP SEQRES 14 A 172 ILE TYR GLU SEQRES 1 B 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 172 LEU VAL PRO ARG GLY SER HIS MET ALA ASN CYS GLU ARG SEQRES 3 B 172 THR PHE ILE ALA ILE LYS PRO ASP GLY VAL GLN ARG GLY SEQRES 4 B 172 LEU VAL GLY GLU ILE ILE LYS ARG PHE GLU GLN LYS GLY SEQRES 5 B 172 PHE ARG LEU VAL GLY LEU LYS PHE MET GLN ALA SER GLU SEQRES 6 B 172 ASP LEU LEU LYS GLU HIS TYR VAL ASP LEU LYS ASP ARG SEQRES 7 B 172 PRO PHE PHE ALA GLY LEU VAL LYS TYR MET HIS SER GLY SEQRES 8 B 172 PRO VAL VAL ALA MET VAL TRP GLU GLY LEU ASN VAL VAL SEQRES 9 B 172 LYS THR GLY ARG VAL MET LEU GLY GLU THR ASN PRO ALA SEQRES 10 B 172 ASP SER LYS PRO GLY THR ILE ARG GLY ASP PHE CYS ILE SEQRES 11 B 172 GLN VAL GLY ARG ASN ILE ILE HIS GLY SER ASP SER VAL SEQRES 12 B 172 GLU SER ALA GLU LYS GLU ILE GLY LEU TRP PHE HIS PRO SEQRES 13 B 172 GLU GLU LEU VAL ASP TYR THR SER CYS ALA GLN ASN TRP SEQRES 14 B 172 ILE TYR GLU SEQRES 1 C 172 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 172 LEU VAL PRO ARG GLY SER HIS MET ALA ASN CYS GLU ARG SEQRES 3 C 172 THR PHE ILE ALA ILE LYS PRO ASP GLY VAL GLN ARG GLY SEQRES 4 C 172 LEU VAL GLY GLU ILE ILE LYS ARG PHE GLU GLN LYS GLY SEQRES 5 C 172 PHE ARG LEU VAL GLY LEU LYS PHE MET GLN ALA SER GLU SEQRES 6 C 172 ASP LEU LEU LYS GLU HIS TYR VAL ASP LEU LYS ASP ARG SEQRES 7 C 172 PRO PHE PHE ALA GLY LEU VAL LYS TYR MET HIS SER GLY SEQRES 8 C 172 PRO VAL VAL ALA MET VAL TRP GLU GLY LEU ASN VAL VAL SEQRES 9 C 172 LYS THR GLY ARG VAL MET LEU GLY GLU THR ASN PRO ALA SEQRES 10 C 172 ASP SER LYS PRO GLY THR ILE ARG GLY ASP PHE CYS ILE SEQRES 11 C 172 GLN VAL GLY ARG ASN ILE ILE HIS GLY SER ASP SER VAL SEQRES 12 C 172 GLU SER ALA GLU LYS GLU ILE GLY LEU TRP PHE HIS PRO SEQRES 13 C 172 GLU GLU LEU VAL ASP TYR THR SER CYS ALA GLN ASN TRP SEQRES 14 C 172 ILE TYR GLU HET PAP A 201 31 HET PAP B 201 31 HET PAP C 201 31 HET MPD C 202 8 HETNAM PAP 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 4 PAP 3(C10 H16 N5 O13 P3) FORMUL 7 MPD C6 H14 O2 FORMUL 8 HOH *512(H2 O) HELIX 1 AA1 MET A 1 CYS A 4 5 4 HELIX 2 AA2 LYS A 12 ARG A 18 1 7 HELIX 3 AA3 LEU A 20 GLY A 32 1 13 HELIX 4 AA4 SER A 44 TYR A 52 1 9 HELIX 5 AA5 VAL A 53 LYS A 56 5 4 HELIX 6 AA6 PHE A 60 SER A 70 1 11 HELIX 7 AA7 ASN A 82 GLY A 92 1 11 HELIX 8 AA8 ASN A 95 SER A 99 5 5 HELIX 9 AA9 THR A 103 CYS A 109 1 7 HELIX 10 AB1 SER A 122 PHE A 134 1 13 HELIX 11 AB2 HIS A 135 LEU A 139 5 5 HELIX 12 AB3 ALA A 146 TYR A 151 1 6 HELIX 13 AB4 HIS B 0 CYS B 4 5 5 HELIX 14 AB5 LYS B 12 ARG B 18 1 7 HELIX 15 AB6 LEU B 20 GLY B 32 1 13 HELIX 16 AB7 SER B 44 TYR B 52 1 9 HELIX 17 AB8 VAL B 53 LYS B 56 5 4 HELIX 18 AB9 PHE B 60 SER B 70 1 11 HELIX 19 AC1 ASN B 82 GLY B 92 1 11 HELIX 20 AC2 ASN B 95 SER B 99 5 5 HELIX 21 AC3 THR B 103 CYS B 109 1 7 HELIX 22 AC4 GLN B 111 ASN B 115 5 5 HELIX 23 AC5 SER B 122 PHE B 134 1 13 HELIX 24 AC6 HIS B 135 LEU B 139 5 5 HELIX 25 AC7 ALA B 146 TYR B 151 1 6 HELIX 26 AC8 LYS C 12 ARG C 18 1 7 HELIX 27 AC9 LEU C 20 GLY C 32 1 13 HELIX 28 AD1 SER C 44 TYR C 52 1 9 HELIX 29 AD2 VAL C 53 LYS C 56 5 4 HELIX 30 AD3 PHE C 60 SER C 70 1 11 HELIX 31 AD4 ASN C 82 GLY C 92 1 11 HELIX 32 AD5 ASN C 95 SER C 99 5 5 HELIX 33 AD6 THR C 103 CYS C 109 1 7 HELIX 34 AD7 GLN C 111 ASN C 115 5 5 HELIX 35 AD8 SER C 122 PHE C 134 1 13 HELIX 36 AD9 HIS C 135 LEU C 139 5 5 HELIX 37 AE1 ALA C 146 TYR C 151 1 6 SHEET 1 AA1 4 ARG A 34 MET A 41 0 SHEET 2 AA1 4 VAL A 73 GLU A 79 -1 O VAL A 77 N VAL A 36 SHEET 3 AA1 4 ARG A 6 ILE A 11 -1 N ILE A 11 O VAL A 74 SHEET 4 AA1 4 ILE A 117 GLY A 119 -1 O HIS A 118 N ALA A 10 SHEET 1 AA2 4 ARG B 34 MET B 41 0 SHEET 2 AA2 4 VAL B 73 GLU B 79 -1 O VAL B 73 N MET B 41 SHEET 3 AA2 4 ARG B 6 ILE B 11 -1 N ILE B 11 O VAL B 74 SHEET 4 AA2 4 ILE B 117 GLY B 119 -1 O HIS B 118 N ALA B 10 SHEET 1 AA3 4 ARG C 34 MET C 41 0 SHEET 2 AA3 4 VAL C 73 GLU C 79 -1 O ALA C 75 N LYS C 39 SHEET 3 AA3 4 ARG C 6 ILE C 11 -1 N ILE C 11 O VAL C 74 SHEET 4 AA3 4 ILE C 117 GLY C 119 -1 O HIS C 118 N ALA C 10 CRYST1 79.070 113.012 118.119 90.00 90.00 90.00 I 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008466 0.00000