HEADER VIRAL PROTEIN 10-APR-23 8OQ0 TITLE CRYSTAL STRUCTURE OF TAILSPIKE DEPOLYMERASE (APK09_GP48) FROM TITLE 2 ACINETOBACTER PHAGE APK09 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER PHAGE APK09; SOURCE 3 ORGANISM_TAXID: 2873387; SOURCE 4 GENE: B1_45; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIOPHAGE, ACINETOBACTER BAUMANNII, TAILSPIKE DEPOLYMERASE, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,K.M.BOYKO,A.Y.NIKOLAEVA,M.M.SHNEIDER,O.Y.TIMOSHINA, AUTHOR 2 A.V.POPOVA,K.A.MIROSHNIKOV,V.O.POPOV REVDAT 3 19-JUN-24 8OQ0 1 REMARK REVDAT 2 07-JUN-23 8OQ0 1 JRNL REVDAT 1 31-MAY-23 8OQ0 0 JRNL AUTH O.Y.TIMOSHINA,A.A.KASIMOVA,M.M.SHNEIDER,I.O.MATYUTA, JRNL AUTH 2 A.Y.NIKOLAEVA,P.V.EVSEEV,N.P.ARBATSKY,A.S.SHASHKOV, JRNL AUTH 3 A.O.CHIZHOV,A.A.SHELENKOV,Y.V.MIKHAYLOVA,P.V.SLUKIN, JRNL AUTH 4 N.V.VOLOZHANTSEV,K.M.BOYKO,Y.A.KNIREL,K.A.MIROSHNIKOV, JRNL AUTH 5 A.V.POPOVA JRNL TITL FRIUNAVIRUS PHAGE-ENCODED DEPOLYMERASES SPECIFIC TO JRNL TITL 2 DIFFERENT CAPSULAR TYPES OF ACINETOBACTER BAUMANNII . JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37240444 JRNL DOI 10.3390/IJMS24109100 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.351 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4693 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6393 ; 2.379 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 605 ;10.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;40.930 ;23.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;20.901 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 658 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3571 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2423 ; 7.508 ; 5.775 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3027 ; 9.961 ; 8.670 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 9.171 ; 5.918 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6763 ;13.000 ;79.138 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20409 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 72.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.33900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 2.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG200, 100MM HEPES PH 7.5, 20% REMARK 280 TACSIMATE PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.34400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.60202 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 140.34667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.34400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.60202 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 140.34667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.34400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.60202 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 140.34667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.34400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.60202 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.34667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.34400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.60202 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.34667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.34400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.60202 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 140.34667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.20404 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 280.69333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.20404 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 280.69333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.20404 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 280.69333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.20404 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 280.69333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.20404 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 280.69333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.20404 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 280.69333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -88.68800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -44.34400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -76.80606 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 ALA A 149 REMARK 465 ALA A 150 REMARK 465 GLN A 151 REMARK 465 VAL A 152 REMARK 465 ALA A 153 REMARK 465 ARG A 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 530 CD GLU A 530 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 382 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ASN A 439 CB - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 492 CG - CD - NE ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 492 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 523 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 584 CG - CD - NE ANGL. DEV. = 18.7 DEGREES REMARK 500 THR A 758 CA - CB - OG1 ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 167 -24.02 -36.86 REMARK 500 ASN A 171 -32.48 -25.76 REMARK 500 ARG A 173 51.55 -93.65 REMARK 500 LYS A 187 127.95 3.22 REMARK 500 ALA A 193 -5.95 89.25 REMARK 500 CYS A 200 164.11 166.10 REMARK 500 SER A 202 -89.45 -121.71 REMARK 500 ALA A 225 -43.14 -154.61 REMARK 500 THR A 242 2.38 -51.71 REMARK 500 ARG A 249 0.53 -52.31 REMARK 500 ASP A 257 106.00 -37.63 REMARK 500 ASN A 291 19.26 -67.62 REMARK 500 ASP A 310 85.71 -165.69 REMARK 500 ALA A 319 -55.82 -27.12 REMARK 500 PRO A 325 10.08 -66.99 REMARK 500 THR A 326 -13.17 -142.47 REMARK 500 LYS A 335 85.53 74.53 REMARK 500 THR A 346 -116.35 -118.83 REMARK 500 ASN A 372 39.60 -75.57 REMARK 500 TYR A 379 -59.23 -127.21 REMARK 500 ARG A 382 -13.71 -162.54 REMARK 500 ASN A 413 72.45 57.60 REMARK 500 SER A 442 120.51 64.41 REMARK 500 ALA A 470 29.42 49.88 REMARK 500 ASN A 476 73.39 -111.31 REMARK 500 ASN A 479 -122.79 49.42 REMARK 500 LYS A 485 61.01 64.38 REMARK 500 CYS A 486 155.35 179.96 REMARK 500 SER A 501 117.92 -163.06 REMARK 500 ALA A 660 22.37 -153.06 REMARK 500 THR A 699 89.38 58.48 REMARK 500 PRO A 718 79.70 -6.01 REMARK 500 PRO A 725 -50.65 -29.70 REMARK 500 THR A 750 -156.40 -118.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 357 ARG A 358 -147.12 REMARK 500 ASP A 437 PRO A 438 147.07 REMARK 500 SER A 717 PRO A 718 -109.65 REMARK 500 ASN A 726 TRP A 727 -148.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 717 -10.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OQ0 A 145 760 PDB 8OQ0 8OQ0 145 760 SEQRES 1 A 616 GLY SER GLU GLU ALA ALA GLN VAL ALA ARG SER ALA ASP SEQRES 2 A 616 LYS VAL ILE ASP ALA SER GLY LEU THR GLN GLN ASP ILE SEQRES 3 A 616 ASN ASP ARG LEU ALA ILE THR TYR PRO THR ALA VAL GLY SEQRES 4 A 616 LEU VAL GLY LYS PRO ASN LEU LYS ASP ALA ASP VAL ILE SEQRES 5 A 616 TYR VAL GLN CYS TYR SER ASN ILE PHE ASP GLY GLY ASP SEQRES 6 A 616 GLY TYR TYR ARG VAL SER ALA ASP THR THR THR VAL ALA SEQRES 7 A 616 ASP GLY ALA TYR VAL ILE ARG ILE ASN PRO ASN LEU ILE SEQRES 8 A 616 ALA THR MET LEU ASN THR THR GLY SER VAL ASP VAL ALA SEQRES 9 A 616 ARG PHE GLY ALA VAL MET ASN ALA ASP VAL SER PRO PHE SEQRES 10 A 616 ILE GLU LYS ALA PHE LYS TYR PHE ARG ASP VAL CYS LEU SEQRES 11 A 616 THR LYS PRO TYR LYS LEU ASN THR VAL VAL GLY ILE PRO SEQRES 12 A 616 ASP GLN ASN ASN TYR SER LYS ASN VAL TYR TYR LEU ARG SEQRES 13 A 616 GLY LEU GLY ASP PRO GLU ILE THR VAL ASP CYS PRO SER SEQRES 14 A 616 ALA VAL PHE THR SER ALA SER ALA LYS LEU ASP PRO THR SEQRES 15 A 616 SER THR VAL ASN LYS PHE THR ALA LYS ILE ASP VAL SER SEQRES 16 A 616 ASN ILE SER PHE ILE GLY THR THR VAL ALA ASN SER VAL SEQRES 17 A 616 VAL PHE ASN GLY ASP ARG LEU TYR ASN ILE ASN VAL HIS SEQRES 18 A 616 HIS ASN ASN PHE LYS GLY ASN ILE THR ILE PHE LYS ALA SEQRES 19 A 616 TYR VAL LYS ARG GLU VAL GLY ARG GLN TYR THR GLN SER SEQRES 20 A 616 VAL SER ILE ASN HIS ASN HIS LEU THR GLY VAL TYR ARG SEQRES 21 A 616 VAL ILE GLU SER ASP LYS SER TYR ASN LEU ASP PHE SER SEQRES 22 A 616 TYR ASN MET CYS GLU ALA CYS ILE GLY GLY ILE TYR VAL SEQRES 23 A 616 GLY VAL ASP ALA PRO TRP ASP PRO ASN ASN ILE SER LEU SEQRES 24 A 616 THR ILE HIS ARG ASN LEU TRP GLU GLY SER GLY MET LEU SEQRES 25 A 616 LEU LYS THR ASN GLY GLY ILE ILE GLY GLY THR ILE SER SEQRES 26 A 616 ALA ASN TYR PHE GLU ASN ASN THR PHE ASN ASP ALA GLY SEQRES 27 A 616 ILE GLU LYS CYS LEU ILE SER ILE ASN ARG THR GLY THR SEQRES 28 A 616 GLY ALA GLY TYR ALA SER GLY LEU VAL ILE SER GLY ASN SEQRES 29 A 616 THR PHE SER GLY ASN GLY ALA ILE PRO ASP PHE VAL ASP SEQRES 30 A 616 VAL ARG TYR VAL ASN GLN SER THR GLU SER SER SER THR SEQRES 31 A 616 SER LYS THR ALA ASN VAL LYS PRO VAL VAL PHE ILE GLY SEQRES 32 A 616 ASN TRP SER ASN SER TYR LEU MET THR ASN PHE ALA GLY SEQRES 33 A 616 ALA LEU LEU ILE ASN ASN ARG CYS SER ASN ARG ASN THR SEQRES 34 A 616 MET PHE ASN ALA TYR SER PRO GLN GLU GLY ARG VAL THR SEQRES 35 A 616 PHE ALA SER GLY TYR LEU ASP LYS PRO LEU SER SER MET SEQRES 36 A 616 LEU SER GLY ASN LEU LEU ASN LEU ILE THR LEU ASP THR SEQRES 37 A 616 ARG PRO CYS PHE THR ALA GLY TYR ILE ASN THR ASN PHE SEQRES 38 A 616 LYS THR THR PHE ASP VAL ASN VAL LEU PHE LYS THR SER SEQRES 39 A 616 GLY GLY ILE ASN THR ALA SER CYS SER PHE LYS LEU ASP SEQRES 40 A 616 VAL PHE VAL TYR THR PRO LEU GLY ALA GLY THR PRO PRO SEQRES 41 A 616 LYS SER ASN LEU LYS ALA VAL MET SER ALA PHE MET GLN SEQRES 42 A 616 SER ASP THR ASN ASP ILE ILE SER THR GLY VAL ASN GLU SEQRES 43 A 616 THR MET LYS SER VAL ILE GLY ALA THR PRO THR MET ALA SEQRES 44 A 616 VAL VAL ASN ASN GLY ASP GLY THR TYR GLY ILE ARG LEU SEQRES 45 A 616 SER PRO PHE THR ASN ALA SER SER PRO ASN TRP GLY ALA SEQRES 46 A 616 ILE THR SER ALA ARG ILE GLU TYR THR TYR GLN GLY THR SEQRES 47 A 616 LEU ILE ALA SER HIS THR SER THR TYR SER THR ALA ASN SEQRES 48 A 616 LEU LEU THR ILE THR HET PEG A 801 7 HET PEG A 802 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 PEG 2(C4 H10 O3) FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 GLN A 167 ASP A 172 1 6 HELIX 2 AA2 ALA A 181 VAL A 185 5 5 HELIX 3 AA3 ASN A 203 GLY A 207 5 5 HELIX 4 AA4 ALA A 248 GLY A 251 5 4 HELIX 5 AA5 VAL A 258 PHE A 269 1 12 HELIX 6 AA6 SER A 318 ASP A 324 1 7 HELIX 7 AA7 THR A 347 ASN A 350 5 4 HELIX 8 AA8 PHE A 478 LYS A 485 1 8 HELIX 9 AA9 ASN A 570 MET A 574 5 5 HELIX 10 AB1 THR A 612 GLY A 619 1 8 HELIX 11 AB2 THR A 753 LEU A 757 5 5 SHEET 1 AA1 2 ILE A 160 ASP A 161 0 SHEET 2 AA1 2 LEU A 165 THR A 166 -1 O LEU A 165 N ASP A 161 SHEET 1 AA2 5 ILE A 176 TYR A 178 0 SHEET 2 AA2 5 VAL A 195 VAL A 198 1 O TYR A 197 N ILE A 176 SHEET 3 AA2 5 GLY A 210 ALA A 216 -1 O TYR A 212 N ILE A 196 SHEET 4 AA2 5 LEU A 234 LEU A 239 -1 O LEU A 239 N TYR A 211 SHEET 5 AA2 5 VAL A 227 ASN A 231 -1 N ILE A 228 O ALA A 236 SHEET 1 AA312 VAL A 245 ASP A 246 0 SHEET 2 AA312 ASP A 271 LEU A 274 1 O CYS A 273 N VAL A 245 SHEET 3 AA312 TYR A 297 GLY A 301 1 O ARG A 300 N VAL A 272 SHEET 4 AA312 THR A 333 SER A 339 1 O ASP A 337 N LEU A 299 SHEET 5 AA312 LEU A 359 HIS A 365 1 O ASN A 363 N ILE A 336 SHEET 6 AA312 GLN A 390 ASN A 395 1 O SER A 393 N VAL A 364 SHEET 7 AA312 SER A 411 SER A 417 1 O SER A 417 N ILE A 394 SHEET 8 AA312 PRO A 438 HIS A 446 1 O ILE A 441 N ASN A 413 SHEET 9 AA312 GLY A 462 SER A 469 1 O ILE A 464 N SER A 442 SHEET 10 AA312 SER A 501 SER A 506 1 O VAL A 504 N GLY A 466 SHEET 11 AA312 VAL A 544 ILE A 546 1 O ILE A 546 N ILE A 505 SHEET 12 AA312 LEU A 562 ILE A 564 1 O LEU A 562 N PHE A 545 SHEET 1 AA4 7 TYR A 278 LEU A 280 0 SHEET 2 AA4 7 GLU A 306 VAL A 309 1 O THR A 308 N TYR A 278 SHEET 3 AA4 7 SER A 342 ILE A 344 1 O ILE A 344 N VAL A 309 SHEET 4 AA4 7 ASN A 368 LYS A 370 1 O ASN A 368 N PHE A 343 SHEET 5 AA4 7 HIS A 398 THR A 400 1 O THR A 400 N PHE A 369 SHEET 6 AA4 7 MET A 420 GLU A 422 1 O GLU A 422 N LEU A 399 SHEET 7 AA4 7 LEU A 449 GLU A 451 1 O LEU A 449 N CYS A 421 SHEET 1 AA5 8 VAL A 352 ASN A 355 0 SHEET 2 AA5 8 THR A 374 LYS A 377 1 O THR A 374 N VAL A 353 SHEET 3 AA5 8 ARG A 404 SER A 408 1 O GLU A 407 N PHE A 376 SHEET 4 AA5 8 GLY A 426 VAL A 430 1 O TYR A 429 N ILE A 406 SHEET 5 AA5 8 MET A 455 THR A 459 1 O LEU A 456 N ILE A 428 SHEET 6 AA5 8 ILE A 488 ILE A 490 1 O SER A 489 N LEU A 457 SHEET 7 AA5 8 VAL A 520 TYR A 524 1 O ARG A 523 N ILE A 490 SHEET 8 AA5 8 LEU A 554 THR A 556 1 O MET A 555 N VAL A 522 SHEET 1 AA6 3 TYR A 472 GLU A 474 0 SHEET 2 AA6 3 THR A 509 SER A 511 1 O SER A 511 N PHE A 473 SHEET 3 AA6 3 TRP A 549 SER A 550 1 O TRP A 549 N PHE A 510 SHEET 1 AA7 5 VAL A 585 PRO A 595 0 SHEET 2 AA7 5 GLY A 728 THR A 742 -1 O TYR A 739 N ALA A 588 SHEET 3 AA7 5 PHE A 625 THR A 637 -1 N LEU A 634 O ARG A 734 SHEET 4 AA7 5 ASN A 642 TYR A 655 -1 O VAL A 652 N THR A 627 SHEET 5 AA7 5 ASN A 667 GLN A 677 -1 O SER A 673 N LYS A 649 SHEET 1 AA8 3 VAL A 585 PRO A 595 0 SHEET 2 AA8 3 GLY A 728 THR A 742 -1 O TYR A 739 N ALA A 588 SHEET 3 AA8 3 SER A 723 SER A 724 -1 N SER A 724 O GLY A 728 SHEET 1 AA9 4 LEU A 600 SER A 601 0 SHEET 2 AA9 4 LEU A 604 ASP A 611 -1 O LEU A 604 N SER A 601 SHEET 3 AA9 4 THR A 711 PHE A 719 -1 O TYR A 712 N LEU A 610 SHEET 4 AA9 4 ILE A 696 ASN A 706 -1 N VAL A 705 O GLY A 713 SHEET 1 AB1 3 LEU A 600 SER A 601 0 SHEET 2 AB1 3 LEU A 604 ASP A 611 -1 O LEU A 604 N SER A 601 SHEET 3 AB1 3 THR A 758 THR A 760 -1 O THR A 760 N THR A 609 SHEET 1 AB2 2 ILE A 683 SER A 685 0 SHEET 2 AB2 2 GLU A 690 THR A 691 -1 O GLU A 690 N ILE A 684 CRYST1 88.688 88.688 421.040 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011275 0.006510 0.000000 0.00000 SCALE2 0.000000 0.013020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002375 0.00000