HEADER TRANSPORT PROTEIN 17-APR-23 8OS1 TITLE X-RAY STRUCTURE OF THE PEROXISOMAL TARGETING SIGNAL 1 (PTS1) OF TITLE 2 TRYPANOSOMA CRUZI PEX5 IN COMPLEX WITH THE PTS1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME TARGETING SIGNAL 1 RECEPTOR; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEROXISOMAL TARGETING SIGNAL 1 (PTS1); COMPND 7 CHAIN: D, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: ECC02_006719; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 10 ORGANISM_TAXID: 5693 KEYWDS TPR DOMAIN, COMPLEX, PEROXISOMAL TARGETING SIGNAL 1 BINDING DOMAIN, KEYWDS 2 CARGO RECOGNITION PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.NAPOLITANO,A.BLAT,G.M.POPOWICZ,G.DUBIN REVDAT 1 02-OCT-24 8OS1 0 JRNL AUTH M.BANASIK,V.NAPOLITANO,A.BLAT,K.ABDULKARIM,J.PLEWKA, JRNL AUTH 2 C.CZAPLEWSKI,A.GIELDON,M.KOZAK,B.WLADYKA,G.POPOWICZ,G.DUBIN JRNL TITL STRUCTURAL DYNAMICS OF THE TPR DOMAIN OF THE PEROXISOMAL JRNL TITL 2 CARGO RECEPTOR PEX5 IN TRYPANOSOMA. JRNL REF INT.J.BIOL.MACROMOL. 35510 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 39304044 JRNL DOI 10.1016/J.IJBIOMAC.2024.135510 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 33423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5062 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6851 ; 1.429 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 5.134 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;33.446 ;22.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 807 ;16.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.949 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3963 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2493 ; 2.430 ; 2.857 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3117 ; 3.558 ; 4.267 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2567 ; 3.807 ; 3.221 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7959 ; 7.387 ;39.918 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B A 10075 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS PH 8.5 AND 30% REMARK 280 (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.66550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.96800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.66550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.96800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 TRS A 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 471 REMARK 465 GLU B 472 REMARK 465 VAL B 473 REMARK 465 ALA B 474 REMARK 465 ALA B 475 REMARK 465 ASP B 476 REMARK 465 GLU B 477 REMARK 465 GLY B 478 REMARK 465 LEU B 479 REMARK 465 ASP B 480 REMARK 465 GLU B 481 REMARK 465 VAL B 482 REMARK 465 PRO B 483 REMARK 465 GLU B 484 REMARK 465 GLU B 485 REMARK 465 ASN B 486 REMARK 465 VAL B 668 REMARK 465 MET A 346 REMARK 465 GLU A 347 REMARK 465 LEU A 470 REMARK 465 GLN A 471 REMARK 465 GLU A 472 REMARK 465 VAL A 473 REMARK 465 ALA A 474 REMARK 465 ALA A 475 REMARK 465 ASP A 476 REMARK 465 GLU A 477 REMARK 465 GLY A 478 REMARK 465 LEU A 479 REMARK 465 ASP A 480 REMARK 465 GLU A 481 REMARK 465 VAL A 482 REMARK 465 PRO A 483 REMARK 465 GLU A 484 REMARK 465 GLU A 485 REMARK 465 ASN A 486 REMARK 465 TYR A 487 REMARK 465 PHE A 488 REMARK 465 PHE A 489 REMARK 465 ALA A 490 REMARK 465 ALA A 491 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 346 CG SD CE REMARK 470 GLU B 347 CG CD OE1 OE2 REMARK 470 LEU B 470 CG CD1 CD2 REMARK 470 TYR B 487 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 489 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 659 CG CD CE NZ REMARK 470 ASP B 665 CG OD1 OD2 REMARK 470 MET B 666 CG SD CE REMARK 470 THR A 348 OG1 CG2 REMARK 470 ASP A 469 CG OD1 OD2 REMARK 470 ARG A 496 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 647 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 951 O HOH A 976 2.19 REMARK 500 OE1 GLN B 514 O HOH B 801 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 618 OE1 GLN B 618 2555 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 409 48.94 70.65 REMARK 500 PRO B 492 -177.38 -69.44 REMARK 500 MET B 666 94.57 179.05 REMARK 500 ASN A 349 -45.87 76.62 REMARK 500 ALA A 375 32.73 70.17 REMARK 500 ALA A 375 36.51 70.17 REMARK 500 GLU A 409 47.77 71.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 614 THR A 615 -148.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 946 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 706 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 355 OD1 REMARK 620 2 ASP B 653 OD1 54.5 REMARK 620 3 HOH B 832 O 89.0 83.0 REMARK 620 4 HOH B 868 O 90.3 144.1 89.8 REMARK 620 N 1 2 3 DBREF1 8OS1 B 347 668 UNP A0A7J6Y110_TRYCR DBREF2 8OS1 B A0A7J6Y110 348 669 DBREF1 8OS1 A 347 668 UNP A0A7J6Y110_TRYCR DBREF2 8OS1 A A0A7J6Y110 348 669 DBREF 8OS1 D 1 5 PDB 8OS1 8OS1 1 5 DBREF 8OS1 C 1 5 PDB 8OS1 8OS1 1 5 SEQADV 8OS1 MET B 346 UNP A0A7J6Y11 INITIATING METHIONINE SEQADV 8OS1 MET A 346 UNP A0A7J6Y11 INITIATING METHIONINE SEQRES 1 B 323 MET GLU THR ASN TYR PRO PHE GLU PRO ASN ASN PRO TYR SEQRES 2 B 323 MET TYR HIS ASP LYS PRO MET GLU GLU GLY ILE ALA MET SEQRES 3 B 323 LEU GLN LEU ALA ASN MET ALA GLU ALA ALA LEU ALA PHE SEQRES 4 B 323 GLU ALA VAL CYS GLN LYS GLU PRO GLU ASN VAL GLU ALA SEQRES 5 B 323 TRP ARG ARG LEU GLY THR THR GLN ALA GLU ASN GLU LYS SEQRES 6 B 323 ASP CYS LEU ALA ILE ILE ALA LEU ASN HIS ALA ARG MET SEQRES 7 B 323 LEU ASP PRO LYS ASP ILE ALA VAL HIS ALA ALA LEU ALA SEQRES 8 B 323 VAL SER HIS THR ASN GLU HIS ASN VAL GLY ALA ALA LEU SEQRES 9 B 323 GLN SER LEU ARG SER TRP LEU LEU SER GLN PRO GLN TYR SEQRES 10 B 323 GLU HIS LEU GLY LEU VAL ASP LEU GLN GLU VAL ALA ALA SEQRES 11 B 323 ASP GLU GLY LEU ASP GLU VAL PRO GLU GLU ASN TYR PHE SEQRES 12 B 323 PHE ALA ALA PRO SER GLU TYR ARG ASP CYS CYS THR LEU SEQRES 13 B 323 LEU TYR ALA ALA VAL GLU MET ASN PRO ASN ASP PRO GLN SEQRES 14 B 323 LEU HIS ALA SER LEU GLY VAL LEU HIS ASN LEU SER HIS SEQRES 15 B 323 ARG PHE ASP GLU ALA ALA LYS ASN PHE ARG ARG ALA VAL SEQRES 16 B 323 GLU LEU ARG PRO ASP ASP ALA HIS THR TRP ASN LYS LEU SEQRES 17 B 323 GLY ALA THR LEU ALA ASN GLY ASN ARG PRO GLN GLU ALA SEQRES 18 B 323 LEU GLU ALA TYR ASN ARG ALA LEU ASP ILE ASN PRO GLY SEQRES 19 B 323 TYR VAL ARG VAL MET TYR ASN MET ALA VAL SER TYR SER SEQRES 20 B 323 ASN MET ALA GLN TYR PRO LEU ALA ALA LYS HIS ILE THR SEQRES 21 B 323 ARG ALA ILE ALA LEU GLN ALA GLY GLY THR ASN PRO GLN SEQRES 22 B 323 GLY GLU GLY SER ARG ILE ALA THR ARG GLY LEU TRP ASP SEQRES 23 B 323 LEU LEU ARG MET THR LEU ASN LEU MET ASP ARG SER ASP SEQRES 24 B 323 LEU VAL GLU ALA SER TRP GLN GLN ASP LEU THR PRO PHE SEQRES 25 B 323 LEU LYS GLU PHE GLY LEU GLU ASP MET ALA VAL SEQRES 1 A 323 MET GLU THR ASN TYR PRO PHE GLU PRO ASN ASN PRO TYR SEQRES 2 A 323 MET TYR HIS ASP LYS PRO MET GLU GLU GLY ILE ALA MET SEQRES 3 A 323 LEU GLN LEU ALA ASN MET ALA GLU ALA ALA LEU ALA PHE SEQRES 4 A 323 GLU ALA VAL CYS GLN LYS GLU PRO GLU ASN VAL GLU ALA SEQRES 5 A 323 TRP ARG ARG LEU GLY THR THR GLN ALA GLU ASN GLU LYS SEQRES 6 A 323 ASP CYS LEU ALA ILE ILE ALA LEU ASN HIS ALA ARG MET SEQRES 7 A 323 LEU ASP PRO LYS ASP ILE ALA VAL HIS ALA ALA LEU ALA SEQRES 8 A 323 VAL SER HIS THR ASN GLU HIS ASN VAL GLY ALA ALA LEU SEQRES 9 A 323 GLN SER LEU ARG SER TRP LEU LEU SER GLN PRO GLN TYR SEQRES 10 A 323 GLU HIS LEU GLY LEU VAL ASP LEU GLN GLU VAL ALA ALA SEQRES 11 A 323 ASP GLU GLY LEU ASP GLU VAL PRO GLU GLU ASN TYR PHE SEQRES 12 A 323 PHE ALA ALA PRO SER GLU TYR ARG ASP CYS CYS THR LEU SEQRES 13 A 323 LEU TYR ALA ALA VAL GLU MET ASN PRO ASN ASP PRO GLN SEQRES 14 A 323 LEU HIS ALA SER LEU GLY VAL LEU HIS ASN LEU SER HIS SEQRES 15 A 323 ARG PHE ASP GLU ALA ALA LYS ASN PHE ARG ARG ALA VAL SEQRES 16 A 323 GLU LEU ARG PRO ASP ASP ALA HIS THR TRP ASN LYS LEU SEQRES 17 A 323 GLY ALA THR LEU ALA ASN GLY ASN ARG PRO GLN GLU ALA SEQRES 18 A 323 LEU GLU ALA TYR ASN ARG ALA LEU ASP ILE ASN PRO GLY SEQRES 19 A 323 TYR VAL ARG VAL MET TYR ASN MET ALA VAL SER TYR SER SEQRES 20 A 323 ASN MET ALA GLN TYR PRO LEU ALA ALA LYS HIS ILE THR SEQRES 21 A 323 ARG ALA ILE ALA LEU GLN ALA GLY GLY THR ASN PRO GLN SEQRES 22 A 323 GLY GLU GLY SER ARG ILE ALA THR ARG GLY LEU TRP ASP SEQRES 23 A 323 LEU LEU ARG MET THR LEU ASN LEU MET ASP ARG SER ASP SEQRES 24 A 323 LEU VAL GLU ALA SER TRP GLN GLN ASP LEU THR PRO PHE SEQRES 25 A 323 LEU LYS GLU PHE GLY LEU GLU ASP MET ALA VAL SEQRES 1 D 5 TYR GLN SER LYS LEU SEQRES 1 C 5 TYR GLN SER LYS LEU HET EDO B 701 4 HET PEG B 702 7 HET EDO B 703 4 HET EDO B 704 4 HET BME B 705 4 HET MG B 706 1 HET EDO B 707 4 HET EDO B 708 4 HET EDO B 709 4 HET EDO B 710 4 HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET BME A 804 4 HET EDO A 805 4 HET BME A 806 4 HET TRS A 807 8 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM BME BETA-MERCAPTOETHANOL HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 5 EDO 14(C2 H6 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 9 BME 3(C2 H6 O S) FORMUL 10 MG MG 2+ FORMUL 21 TRS C4 H12 N O3 1+ FORMUL 25 HOH *288(H2 O) HELIX 1 AA1 ASN B 356 HIS B 361 5 6 HELIX 2 AA2 LYS B 363 LEU B 374 1 12 HELIX 3 AA3 ASN B 376 GLU B 391 1 16 HELIX 4 AA4 ASN B 394 ASN B 408 1 15 HELIX 5 AA5 LYS B 410 ASP B 425 1 16 HELIX 6 AA6 ASP B 428 GLU B 442 1 15 HELIX 7 AA7 ASN B 444 SER B 458 1 15 HELIX 8 AA8 TYR B 462 VAL B 468 5 7 HELIX 9 AA9 SER B 493 ASN B 509 1 17 HELIX 10 AB1 ASP B 512 SER B 526 1 15 HELIX 11 AB2 ARG B 528 ARG B 543 1 16 HELIX 12 AB3 ASP B 546 GLY B 560 1 15 HELIX 13 AB4 ARG B 562 ASN B 577 1 16 HELIX 14 AB5 TYR B 580 MET B 594 1 15 HELIX 15 AB6 GLN B 596 GLY B 613 1 18 HELIX 16 AB7 GLY B 619 MET B 640 1 22 HELIX 17 AB8 ARG B 642 ASP B 644 5 3 HELIX 18 AB9 LEU B 645 GLN B 651 1 7 HELIX 19 AC1 LEU B 654 PHE B 661 1 8 HELIX 20 AC2 ASN A 356 HIS A 361 5 6 HELIX 21 AC3 LYS A 363 LEU A 374 1 12 HELIX 22 AC4 ASN A 376 GLU A 391 1 16 HELIX 23 AC5 ASN A 394 ASN A 408 1 15 HELIX 24 AC6 LYS A 410 ASP A 425 1 16 HELIX 25 AC7 ASP A 428 GLU A 442 1 15 HELIX 26 AC8 ASN A 444 SER A 458 1 15 HELIX 27 AC9 TYR A 462 VAL A 468 5 7 HELIX 28 AD1 SER A 493 ASN A 509 1 17 HELIX 29 AD2 ASP A 512 SER A 526 1 15 HELIX 30 AD3 ARG A 528 ARG A 543 1 16 HELIX 31 AD4 ASP A 546 GLY A 560 1 15 HELIX 32 AD5 ARG A 562 ASN A 577 1 16 HELIX 33 AD6 TYR A 580 MET A 594 1 15 HELIX 34 AD7 GLN A 596 GLY A 613 1 18 HELIX 35 AD8 GLY A 619 MET A 640 1 22 HELIX 36 AD9 ARG A 642 ASP A 644 5 3 HELIX 37 AE1 LEU A 645 GLN A 651 1 7 HELIX 38 AE2 LEU A 654 PHE A 661 1 8 HELIX 39 AE3 LEU A 663 ALA A 667 5 5 LINK SG CYS B 499 S2 BME B 705 1555 1555 2.10 LINK SG CYS A 412 S2 BME A 806 1555 1555 2.06 LINK SG CYS A 499 S2 BME A 804 1555 1555 2.11 LINK OD1 ASN B 355 MG MG B 706 1555 1555 1.99 LINK OD1 ASP B 653 MG MG B 706 1555 2555 2.02 LINK MG MG B 706 O HOH B 832 1555 2555 2.05 LINK MG MG B 706 O HOH B 868 1555 2555 2.25 CRYST1 129.331 69.936 71.106 90.00 100.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007732 0.000000 0.001370 0.00000 SCALE2 0.000000 0.014299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014283 0.00000