HEADER CELL ADHESION 17-APR-23 8OS2 TITLE STRUCTURE OF THE HUMAN LYVE-1 (LYMPHATIC VESSEL ENDOTHELIAL RECEPTOR- TITLE 2 1) HYALURONAN BINDING DOMAIN IN AN UNLIGANDED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYMPHATIC VESSEL ENDOTHELIAL HYALURONIC ACID RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYVE-1,CELL SURFACE RETENTION SEQUENCE-BINDING PROTEIN 1, COMPND 5 CRSBP-1,EXTRACELLULAR LINK DOMAIN-CONTAINING PROTEIN 1,HYALURONIC COMPND 6 ACID RECEPTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LYVE1, CRSBP1, HAR, XLKD1, UNQ230/PRO263; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO KEYWDS HYALURONAN BINDING, CELL MIGRATION, LYMPHATIC SYSTEM, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR T.NI,S.BANNERJI,D.J.JACKSON,R.J.C.GILBERT REVDAT 1 31-JUL-24 8OS2 0 JRNL AUTH F.BANO,S.BANNERJI,T.NI,D.E.GREEN,P.L.DEANGELIS,E.PACI, JRNL AUTH 2 M.LEPSIK,D.J.JACKSON,R.J.C.GILBERT JRNL TITL A NOVEL SLIDING INTERACTION WITH HYALURONAN UNDERLIES THE JRNL TITL 2 MODE OF ACTION OF LYVE-1, THE RECEPTOR FOR LEUCOCYTE ENTRY JRNL TITL 3 AND TRAFFICKING IN THE LYMPHATICS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7700 - 3.2800 1.00 3101 138 0.1545 0.2136 REMARK 3 2 3.2800 - 2.6000 1.00 2880 179 0.1922 0.2168 REMARK 3 3 2.6000 - 2.2700 1.00 2862 164 0.1864 0.2014 REMARK 3 4 2.2700 - 2.0700 1.00 2874 128 0.1931 0.2236 REMARK 3 5 2.0700 - 1.9200 1.00 2853 138 0.2119 0.2510 REMARK 3 6 1.9200 - 1.8100 1.00 2842 135 0.2219 0.2533 REMARK 3 7 1.8100 - 1.7100 1.00 2827 151 0.2718 0.3095 REMARK 3 8 1.7100 - 1.6400 1.00 2796 147 0.3374 0.3424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1021 REMARK 3 ANGLE : 0.969 1382 REMARK 3 CHIRALITY : 0.062 163 REMARK 3 PLANARITY : 0.006 170 REMARK 3 DIHEDRAL : 16.352 153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A):28.541664 50.4674 9.2297 REMARK 3 T TENSOR REMARK 3 T11: 0.5057 T22: 0.4623 REMARK 3 T33: 0.3072 T12: 0.0659 REMARK 3 T13: -0.0070 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 9.1547 L22: 8.4849 REMARK 3 L33: 1.7956 L12: 3.9410 REMARK 3 L13: -3.9416 L23: -2.5265 REMARK 3 S TENSOR REMARK 3 S11: -0.1737 S12: 1.4957 S13: -0.5022 REMARK 3 S21: -1.3697 S22: 0.1236 S23: -0.1146 REMARK 3 S31: 0.9714 S32: -0.5931 S33: -0.1471 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6667 53.8366 26.1567 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.2953 REMARK 3 T33: 0.2248 T12: -0.0394 REMARK 3 T13: -0.0012 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 8.7573 L22: 2.0374 REMARK 3 L33: 8.7520 L12: -1.4079 REMARK 3 L13: -2.0507 L23: 4.0982 REMARK 3 S TENSOR REMARK 3 S11: -0.2138 S12: -0.0497 S13: -0.5168 REMARK 3 S21: 0.4824 S22: 0.1672 S23: 0.4437 REMARK 3 S31: 0.5516 S32: -0.0104 S33: -0.0676 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1028 50.2011 16.8839 REMARK 3 T TENSOR REMARK 3 T11: 0.2995 T22: 0.2901 REMARK 3 T33: 0.2520 T12: 0.1043 REMARK 3 T13: -0.0375 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 6.5703 L22: 5.6903 REMARK 3 L33: 8.1323 L12: 2.4264 REMARK 3 L13: -0.1015 L23: 2.2379 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.4783 S13: -0.8204 REMARK 3 S21: -0.3163 S22: -0.1411 S23: -0.4115 REMARK 3 S31: 0.6953 S32: 0.4131 S33: 0.1900 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9474 59.4090 13.4578 REMARK 3 T TENSOR REMARK 3 T11: 0.3474 T22: 0.3194 REMARK 3 T33: 0.1688 T12: 0.0112 REMARK 3 T13: -0.0023 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 3.2008 L22: 3.3433 REMARK 3 L33: 5.4390 L12: -0.7103 REMARK 3 L13: 4.0139 L23: 0.1979 REMARK 3 S TENSOR REMARK 3 S11: 0.1443 S12: 0.4337 S13: 0.3132 REMARK 3 S21: -0.5541 S22: -0.1814 S23: -0.0112 REMARK 3 S31: -0.1714 S32: 0.4819 S33: 0.1272 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4427 58.2637 29.2623 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.3217 REMARK 3 T33: 0.2121 T12: -0.0537 REMARK 3 T13: -0.0285 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 7.3208 L22: 3.4395 REMARK 3 L33: 6.2818 L12: -1.2429 REMARK 3 L13: -0.7968 L23: -1.4297 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.9893 S13: 0.0123 REMARK 3 S21: 0.3451 S22: -0.0128 S23: -0.0980 REMARK 3 S31: -0.3157 S32: 0.4374 S33: 0.0346 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7088 58.1828 26.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.4492 REMARK 3 T33: 0.2294 T12: -0.0456 REMARK 3 T13: -0.0167 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.2294 L22: 3.8044 REMARK 3 L33: 6.4790 L12: -0.6426 REMARK 3 L13: -3.1859 L23: -1.6764 REMARK 3 S TENSOR REMARK 3 S11: 0.3297 S12: -0.7268 S13: 0.1531 REMARK 3 S21: 0.3202 S22: -0.1516 S23: -0.1927 REMARK 3 S31: -0.6075 S32: 0.6446 S33: -0.0030 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7362 47.5244 37.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.7025 T22: 0.5264 REMARK 3 T33: 0.5506 T12: 0.0638 REMARK 3 T13: -0.0906 T23: 0.1692 REMARK 3 L TENSOR REMARK 3 L11: 6.5543 L22: 3.8206 REMARK 3 L33: 3.4424 L12: 0.6761 REMARK 3 L13: 2.9168 L23: 3.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: 0.2106 S13: -0.8129 REMARK 3 S21: 0.8867 S22: 0.5021 S23: -0.8619 REMARK 3 S31: 1.5411 S32: -0.0827 S33: -0.6884 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1276 58.1909 31.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.5922 REMARK 3 T33: 0.2472 T12: -0.0008 REMARK 3 T13: -0.0575 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 6.1584 L22: 1.2621 REMARK 3 L33: 5.8152 L12: 2.7393 REMARK 3 L13: -5.9735 L23: -2.6586 REMARK 3 S TENSOR REMARK 3 S11: -0.4535 S12: -0.5321 S13: 0.5236 REMARK 3 S21: -0.3574 S22: 0.4356 S23: 0.2029 REMARK 3 S31: 0.5737 S32: -0.1830 S33: 0.0159 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1216 58.1370 21.2307 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.2753 REMARK 3 T33: 0.1157 T12: -0.0179 REMARK 3 T13: -0.0449 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 9.3278 L22: 4.6272 REMARK 3 L33: 5.5843 L12: -0.7329 REMARK 3 L13: -2.5245 L23: -0.7596 REMARK 3 S TENSOR REMARK 3 S11: 0.1933 S12: 0.5576 S13: -0.1185 REMARK 3 S21: -0.2623 S22: -0.1355 S23: 0.1055 REMARK 3 S31: 0.1045 S32: 0.1835 S33: -0.0580 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2423 58.6514 30.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.3755 REMARK 3 T33: 0.3950 T12: -0.0350 REMARK 3 T13: 0.0284 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 2.1470 L22: 4.5669 REMARK 3 L33: 7.2226 L12: -0.0111 REMARK 3 L13: 1.5289 L23: -0.4028 REMARK 3 S TENSOR REMARK 3 S11: -0.2052 S12: 0.3440 S13: 0.5257 REMARK 3 S21: 0.0333 S22: 0.1215 S23: 0.6584 REMARK 3 S31: -0.1412 S32: -0.6881 S33: -0.0437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 303577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 41.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.18.2_3874 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M NACL, 0.1M SODIUM/POTASSIUM REMARK 280 PHOSPHATE PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.88500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.40500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.94250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.82750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.40500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.94250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.40500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.82750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.88500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 CYS A 4 REMARK 465 PHE A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 TRP A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 ARG A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 GLN A 22 REMARK 465 GLY A 23 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 84 CA CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 304 O HOH A 313 2.10 REMARK 500 NH1 ARG A 26 OE2 GLU A 28 2.15 REMARK 500 O HOH A 422 O HOH A 440 2.15 REMARK 500 O HOH A 403 O HOH A 444 2.18 REMARK 500 O HOH A 306 O HOH A 415 2.18 REMARK 500 O HOH A 328 O HOH A 400 2.18 REMARK 500 O HOH A 347 O HOH A 434 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 51 -152.50 -101.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8ORX RELATED DB: PDB REMARK 900 THE UNLIGANDED MOUSE ISOFORM. THIS IS THE UNLIGANDED HUMAN ISOFORM. DBREF 8OS2 A 1 144 UNP Q9Y5Y7 LYVE1_HUMAN 1 144 SEQADV 8OS2 HIS A 145 UNP Q9Y5Y7 EXPRESSION TAG SEQADV 8OS2 HIS A 146 UNP Q9Y5Y7 EXPRESSION TAG SEQRES 1 A 146 MET ALA ARG CYS PHE SER LEU VAL LEU LEU LEU THR SER SEQRES 2 A 146 ILE TRP THR THR ARG LEU LEU VAL GLN GLY SER LEU ARG SEQRES 3 A 146 ALA GLU GLU LEU SER ILE GLN VAL SER CYS ARG ILE MET SEQRES 4 A 146 GLY ILE THR LEU VAL SER LYS LYS ALA ASN GLN GLN LEU SEQRES 5 A 146 ASN PHE THR GLU ALA LYS GLU ALA CYS ARG LEU LEU GLY SEQRES 6 A 146 LEU SER LEU ALA GLY LYS ASP GLN VAL GLU THR ALA LEU SEQRES 7 A 146 LYS ALA SER PHE GLU THR CYS SER TYR GLY TRP VAL GLY SEQRES 8 A 146 ASP GLY PHE VAL VAL ILE SER ARG ILE SER PRO ASN PRO SEQRES 9 A 146 LYS CYS GLY LYS ASN GLY VAL GLY VAL LEU ILE TRP LYS SEQRES 10 A 146 VAL PRO VAL SER ARG GLN PHE ALA ALA TYR CYS TYR ASN SEQRES 11 A 146 SER SER ASP THR TRP THR ASN SER CYS ILE PRO GLU ILE SEQRES 12 A 146 ILE HIS HIS HET NAG A 201 14 HET NAG A 202 14 HET GOL A 203 6 HET GOL A 204 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *158(H2 O) HELIX 1 AA1 ARG A 26 GLU A 28 5 3 HELIX 2 AA2 ASN A 53 LEU A 64 1 12 HELIX 3 AA3 GLY A 70 ALA A 80 1 11 SHEET 1 AA1 4 LEU A 30 ILE A 32 0 SHEET 2 AA1 4 ILE A 41 LYS A 46 -1 O SER A 45 N SER A 31 SHEET 3 AA1 4 ALA A 125 TYR A 129 -1 O ALA A 126 N VAL A 44 SHEET 4 AA1 4 SER A 67 LEU A 68 -1 N SER A 67 O TYR A 129 SHEET 1 AA2 6 LEU A 30 ILE A 32 0 SHEET 2 AA2 6 ILE A 41 LYS A 46 -1 O SER A 45 N SER A 31 SHEET 3 AA2 6 ALA A 125 TYR A 129 -1 O ALA A 126 N VAL A 44 SHEET 4 AA2 6 GLY A 88 VAL A 90 1 N TRP A 89 O ALA A 125 SHEET 5 AA2 6 PHE A 94 ARG A 99 -1 O VAL A 96 N GLY A 88 SHEET 6 AA2 6 GLY A 112 LYS A 117 -1 O TRP A 116 N VAL A 95 SSBOND 1 CYS A 36 CYS A 139 1555 1555 2.06 SSBOND 2 CYS A 61 CYS A 128 1555 1555 2.06 SSBOND 3 CYS A 85 CYS A 106 1555 1555 2.03 LINK ND2 ASN A 53 C1 NAG A 202 1555 1555 1.44 LINK ND2 ASN A 130 C1 NAG A 201 1555 1555 1.42 CRYST1 70.810 70.810 75.770 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013198 0.00000