HEADER BLOOD CLOTTING 18-APR-23 8OS5 TITLE CRYSTAL STRUCTURE OF THE FACTOR XII HEAVY CHAIN REVEALS AN TITLE 2 INTERLOCKING DIMER WITH A FNII TO KRINGLE DOMAIN INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XII-MIE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MALAYANA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 2294142 KEYWDS FACTOR XII HEAVY CHAIN CRYSTAL STRUCTURE THROMBOSIS KRINGLE DOMAIN, KEYWDS 2 BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR C.LI,M.SALEEM,B.G.KAIRA,A.BROWN,C.WILSON,H.PHILIPPOU,J.EMSLEY REVDAT 1 27-MAR-24 8OS5 0 JRNL AUTH B.G.KAIRA,A.SLATER,K.R.MCCRAE,I.DREVENY,U.SUMYA,N.J.MUTCH, JRNL AUTH 2 M.SEARLE,J.EMSLEY JRNL TITL FACTOR XII AND KININOGEN ASYMMETRIC ASSEMBLY WITH JRNL TITL 2 GC1QR/C1QBP/P32 IS GOVERNED BY ALLOSTERY. JRNL REF BLOOD V. 136 1685 2020 JRNL REFN ESSN 1528-0020 JRNL PMID 32559765 JRNL DOI 10.1182/BLOOD.2020004818 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.2 REMARK 3 NUMBER OF REFLECTIONS : 13995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 77.9700 - 7.3200 0.99 2146 252 0.2369 0.3332 REMARK 3 2 7.3200 - 5.8100 1.00 2083 243 0.2886 0.3091 REMARK 3 3 5.8100 - 5.0800 0.97 2001 220 0.2338 0.2874 REMARK 3 4 5.0800 - 4.6100 0.84 1713 192 0.2264 0.2677 REMARK 3 5 4.6100 - 4.2800 0.71 1455 167 0.2522 0.3131 REMARK 3 6 4.2800 - 4.0300 0.57 1183 119 0.2902 0.3705 REMARK 3 7 4.0300 - 3.8300 0.46 917 114 0.3022 0.3841 REMARK 3 8 3.8300 - 3.6600 0.33 664 62 0.3396 0.4038 REMARK 3 9 3.6600 - 3.5200 0.16 322 33 0.3677 0.3514 REMARK 3 10 3.5200 - 3.4000 0.05 97 12 0.3630 0.4583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5897 REMARK 3 ANGLE : 1.535 8005 REMARK 3 CHIRALITY : 0.083 796 REMARK 3 PLANARITY : 0.015 1073 REMARK 3 DIHEDRAL : 6.397 799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14002 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.394 REMARK 200 RESOLUTION RANGE LOW (A) : 77.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PAA1200, 0.1M UREA., EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.26800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.96750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.29700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.96750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.26800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.29700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.26800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.29700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.96750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.29700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.26800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.96750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 TRP A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 HIS A 10 REMARK 465 LYS A 11 REMARK 465 TYR A 12 REMARK 465 LYS A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 GLU A 16 REMARK 465 HIS A 17 REMARK 465 THR A 278 REMARK 465 PRO A 279 REMARK 465 THR A 280 REMARK 465 GLN A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 PRO A 284 REMARK 465 PRO A 285 REMARK 465 THR A 286 REMARK 465 PRO A 287 REMARK 465 VAL A 288 REMARK 465 SER A 289 REMARK 465 PRO A 290 REMARK 465 ARG A 291 REMARK 465 LEU A 292 REMARK 465 HIS A 293 REMARK 465 VAL A 294 REMARK 465 PRO A 295 REMARK 465 ILE B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 TRP B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 9 REMARK 465 HIS B 10 REMARK 465 LYS B 11 REMARK 465 TYR B 12 REMARK 465 LYS B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 HIS B 17 REMARK 465 THR B 18 REMARK 465 VAL B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 21 REMARK 465 THR B 22 REMARK 465 VAL B 23 REMARK 465 THR B 24 REMARK 465 GLY B 25 REMARK 465 GLU B 26 REMARK 465 PRO B 27 REMARK 465 CYS B 28 REMARK 465 HIS B 29 REMARK 465 PHE B 30 REMARK 465 PRO B 31 REMARK 465 PHE B 32 REMARK 465 GLN B 33 REMARK 465 TYR B 34 REMARK 465 HIS B 35 REMARK 465 ARG B 36 REMARK 465 GLN B 37 REMARK 465 LEU B 38 REMARK 465 TYR B 39 REMARK 465 HIS B 40 REMARK 465 LYS B 41 REMARK 465 CYS B 42 REMARK 465 THR B 43 REMARK 465 HIS B 44 REMARK 465 LYS B 45 REMARK 465 GLY B 46 REMARK 465 ARG B 47 REMARK 465 PRO B 48 REMARK 465 GLY B 49 REMARK 465 PRO B 50 REMARK 465 GLN B 51 REMARK 465 PRO B 52 REMARK 465 TRP B 53 REMARK 465 CYS B 54 REMARK 465 ALA B 55 REMARK 465 THR B 56 REMARK 465 THR B 57 REMARK 465 PRO B 58 REMARK 465 ASN B 59 REMARK 465 PHE B 60 REMARK 465 ASP B 61 REMARK 465 GLN B 62 REMARK 465 ASP B 63 REMARK 465 GLN B 64 REMARK 465 ARG B 65 REMARK 465 TRP B 66 REMARK 465 GLY B 67 REMARK 465 TYR B 68 REMARK 465 CYS B 69 REMARK 465 LEU B 70 REMARK 465 GLU B 71 REMARK 465 PRO B 72 REMARK 465 LYS B 73 REMARK 465 LYS B 74 REMARK 465 VAL B 75 REMARK 465 LYS B 76 REMARK 465 THR B 278 REMARK 465 PRO B 279 REMARK 465 THR B 280 REMARK 465 GLN B 281 REMARK 465 ALA B 282 REMARK 465 ALA B 283 REMARK 465 PRO B 284 REMARK 465 PRO B 285 REMARK 465 THR B 286 REMARK 465 PRO B 287 REMARK 465 VAL B 288 REMARK 465 SER B 289 REMARK 465 PRO B 290 REMARK 465 ARG B 291 REMARK 465 LEU B 292 REMARK 465 HIS B 293 REMARK 465 VAL B 294 REMARK 465 PRO B 295 REMARK 465 ILE C 1 REMARK 465 PRO C 2 REMARK 465 PRO C 3 REMARK 465 TRP C 4 REMARK 465 GLU C 5 REMARK 465 ALA C 6 REMARK 465 PRO C 7 REMARK 465 LYS C 8 REMARK 465 GLU C 9 REMARK 465 HIS C 10 REMARK 465 LYS C 11 REMARK 465 TYR C 12 REMARK 465 LYS C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 HIS C 17 REMARK 465 GLN C 277 REMARK 465 THR C 278 REMARK 465 PRO C 279 REMARK 465 THR C 280 REMARK 465 GLN C 281 REMARK 465 ALA C 282 REMARK 465 ALA C 283 REMARK 465 PRO C 284 REMARK 465 PRO C 285 REMARK 465 THR C 286 REMARK 465 PRO C 287 REMARK 465 VAL C 288 REMARK 465 SER C 289 REMARK 465 PRO C 290 REMARK 465 ARG C 291 REMARK 465 LEU C 292 REMARK 465 HIS C 293 REMARK 465 VAL C 294 REMARK 465 PRO C 295 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 26 CD REMARK 480 LYS A 74 CA REMARK 480 HIS B 105 CG REMARK 480 LYS C 74 CA REMARK 480 HIS C 105 CG REMARK 480 ARG C 263 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 31 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 CYS A 111 CA - CB - SG ANGL. DEV. = 9.7 DEGREES REMARK 500 ALA A 138 N - CA - CB ANGL. DEV. = 8.6 DEGREES REMARK 500 CYS B 85 CB - CA - C ANGL. DEV. = 9.6 DEGREES REMARK 500 ASN C 230 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ALA C 236 CB - CA - C ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 48 29.59 -76.37 REMARK 500 LYS A 76 116.87 -37.93 REMARK 500 SER A 96 -3.24 83.80 REMARK 500 GLN A 104 -124.00 48.43 REMARK 500 LEU A 106 12.32 82.68 REMARK 500 GLN A 152 116.63 -161.25 REMARK 500 THR A 227 -64.05 -121.78 REMARK 500 ARG A 263 -122.61 58.53 REMARK 500 THR B 90 138.65 -170.33 REMARK 500 SER B 96 14.69 81.10 REMARK 500 GLN B 104 -14.75 84.24 REMARK 500 CYS B 111 62.35 37.57 REMARK 500 LYS B 127 119.96 -36.99 REMARK 500 ALA B 210 122.58 -38.03 REMARK 500 GLU B 225 -127.37 46.40 REMARK 500 SER B 267 -166.15 -119.21 REMARK 500 GLN C 64 32.46 73.27 REMARK 500 ASP C 77 170.03 -58.23 REMARK 500 SER C 96 61.95 60.96 REMARK 500 GLN C 104 -122.80 53.19 REMARK 500 HIS C 110 46.41 36.87 REMARK 500 HIS C 176 -176.14 -178.26 REMARK 500 SER C 224 28.97 41.63 REMARK 500 GLU C 225 42.05 35.06 REMARK 500 ALA C 226 -157.57 -94.77 REMARK 500 ASP C 264 -15.68 76.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 47 0.18 SIDE CHAIN REMARK 500 ARG A 65 0.25 SIDE CHAIN REMARK 500 ARG A 207 0.20 SIDE CHAIN REMARK 500 ARG A 263 0.28 SIDE CHAIN REMARK 500 ARG B 123 0.29 SIDE CHAIN REMARK 500 ARG B 207 0.23 SIDE CHAIN REMARK 500 ARG B 229 0.29 SIDE CHAIN REMARK 500 ARG B 255 0.18 SIDE CHAIN REMARK 500 ARG C 207 0.16 SIDE CHAIN REMARK 500 ARG C 229 0.24 SIDE CHAIN REMARK 500 ARG C 237 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8OS5 A 1 295 UNP Q8IZZ5 Q8IZZ5_HUMAN 20 314 DBREF 8OS5 B 1 295 UNP Q8IZZ5 Q8IZZ5_HUMAN 20 314 DBREF 8OS5 C 1 295 UNP Q8IZZ5 Q8IZZ5_HUMAN 20 314 SEQRES 1 A 295 ILE PRO PRO TRP GLU ALA PRO LYS GLU HIS LYS TYR LYS SEQRES 2 A 295 ALA GLU GLU HIS THR VAL VAL LEU THR VAL THR GLY GLU SEQRES 3 A 295 PRO CYS HIS PHE PRO PHE GLN TYR HIS ARG GLN LEU TYR SEQRES 4 A 295 HIS LYS CYS THR HIS LYS GLY ARG PRO GLY PRO GLN PRO SEQRES 5 A 295 TRP CYS ALA THR THR PRO ASN PHE ASP GLN ASP GLN ARG SEQRES 6 A 295 TRP GLY TYR CYS LEU GLU PRO LYS LYS VAL LYS ASP HIS SEQRES 7 A 295 CYS SER LYS HIS SER PRO CYS GLN LYS GLY GLY THR CYS SEQRES 8 A 295 VAL ASN MET PRO SER GLY PRO HIS CYS LEU CYS PRO GLN SEQRES 9 A 295 HIS LEU THR GLY ASN HIS CYS GLN LYS GLU LYS CYS PHE SEQRES 10 A 295 GLU PRO GLN LEU LEU ARG PHE PHE HIS LYS ASN GLU ILE SEQRES 11 A 295 TRP TYR ARG THR GLU GLN ALA ALA VAL ALA ARG CYS GLN SEQRES 12 A 295 CYS LYS GLY PRO ASP ALA HIS CYS GLN ARG LEU ALA SER SEQRES 13 A 295 GLN ALA CYS ARG THR ASN PRO CYS LEU HIS GLY GLY ARG SEQRES 14 A 295 CYS LEU GLU VAL GLU GLY HIS ARG LEU CYS HIS CYS PRO SEQRES 15 A 295 VAL GLY TYR THR GLY PRO PHE CYS ASP VAL ASP THR LYS SEQRES 16 A 295 ALA SER CYS TYR ASP GLY ARG GLY LEU SER TYR ARG GLY SEQRES 17 A 295 LEU ALA ARG THR THR LEU SER GLY ALA PRO CYS GLN PRO SEQRES 18 A 295 TRP ALA SER GLU ALA THR TYR ARG ASN VAL THR ALA GLU SEQRES 19 A 295 GLN ALA ARG ASN TRP GLY LEU GLY GLY HIS ALA PHE CYS SEQRES 20 A 295 ARG ASN PRO ASP ASN ASP ILE ARG PRO TRP CYS PHE VAL SEQRES 21 A 295 LEU ASN ARG ASP ARG LEU SER TRP GLU TYR CYS ASP LEU SEQRES 22 A 295 ALA GLN CYS GLN THR PRO THR GLN ALA ALA PRO PRO THR SEQRES 23 A 295 PRO VAL SER PRO ARG LEU HIS VAL PRO SEQRES 1 B 295 ILE PRO PRO TRP GLU ALA PRO LYS GLU HIS LYS TYR LYS SEQRES 2 B 295 ALA GLU GLU HIS THR VAL VAL LEU THR VAL THR GLY GLU SEQRES 3 B 295 PRO CYS HIS PHE PRO PHE GLN TYR HIS ARG GLN LEU TYR SEQRES 4 B 295 HIS LYS CYS THR HIS LYS GLY ARG PRO GLY PRO GLN PRO SEQRES 5 B 295 TRP CYS ALA THR THR PRO ASN PHE ASP GLN ASP GLN ARG SEQRES 6 B 295 TRP GLY TYR CYS LEU GLU PRO LYS LYS VAL LYS ASP HIS SEQRES 7 B 295 CYS SER LYS HIS SER PRO CYS GLN LYS GLY GLY THR CYS SEQRES 8 B 295 VAL ASN MET PRO SER GLY PRO HIS CYS LEU CYS PRO GLN SEQRES 9 B 295 HIS LEU THR GLY ASN HIS CYS GLN LYS GLU LYS CYS PHE SEQRES 10 B 295 GLU PRO GLN LEU LEU ARG PHE PHE HIS LYS ASN GLU ILE SEQRES 11 B 295 TRP TYR ARG THR GLU GLN ALA ALA VAL ALA ARG CYS GLN SEQRES 12 B 295 CYS LYS GLY PRO ASP ALA HIS CYS GLN ARG LEU ALA SER SEQRES 13 B 295 GLN ALA CYS ARG THR ASN PRO CYS LEU HIS GLY GLY ARG SEQRES 14 B 295 CYS LEU GLU VAL GLU GLY HIS ARG LEU CYS HIS CYS PRO SEQRES 15 B 295 VAL GLY TYR THR GLY PRO PHE CYS ASP VAL ASP THR LYS SEQRES 16 B 295 ALA SER CYS TYR ASP GLY ARG GLY LEU SER TYR ARG GLY SEQRES 17 B 295 LEU ALA ARG THR THR LEU SER GLY ALA PRO CYS GLN PRO SEQRES 18 B 295 TRP ALA SER GLU ALA THR TYR ARG ASN VAL THR ALA GLU SEQRES 19 B 295 GLN ALA ARG ASN TRP GLY LEU GLY GLY HIS ALA PHE CYS SEQRES 20 B 295 ARG ASN PRO ASP ASN ASP ILE ARG PRO TRP CYS PHE VAL SEQRES 21 B 295 LEU ASN ARG ASP ARG LEU SER TRP GLU TYR CYS ASP LEU SEQRES 22 B 295 ALA GLN CYS GLN THR PRO THR GLN ALA ALA PRO PRO THR SEQRES 23 B 295 PRO VAL SER PRO ARG LEU HIS VAL PRO SEQRES 1 C 295 ILE PRO PRO TRP GLU ALA PRO LYS GLU HIS LYS TYR LYS SEQRES 2 C 295 ALA GLU GLU HIS THR VAL VAL LEU THR VAL THR GLY GLU SEQRES 3 C 295 PRO CYS HIS PHE PRO PHE GLN TYR HIS ARG GLN LEU TYR SEQRES 4 C 295 HIS LYS CYS THR HIS LYS GLY ARG PRO GLY PRO GLN PRO SEQRES 5 C 295 TRP CYS ALA THR THR PRO ASN PHE ASP GLN ASP GLN ARG SEQRES 6 C 295 TRP GLY TYR CYS LEU GLU PRO LYS LYS VAL LYS ASP HIS SEQRES 7 C 295 CYS SER LYS HIS SER PRO CYS GLN LYS GLY GLY THR CYS SEQRES 8 C 295 VAL ASN MET PRO SER GLY PRO HIS CYS LEU CYS PRO GLN SEQRES 9 C 295 HIS LEU THR GLY ASN HIS CYS GLN LYS GLU LYS CYS PHE SEQRES 10 C 295 GLU PRO GLN LEU LEU ARG PHE PHE HIS LYS ASN GLU ILE SEQRES 11 C 295 TRP TYR ARG THR GLU GLN ALA ALA VAL ALA ARG CYS GLN SEQRES 12 C 295 CYS LYS GLY PRO ASP ALA HIS CYS GLN ARG LEU ALA SER SEQRES 13 C 295 GLN ALA CYS ARG THR ASN PRO CYS LEU HIS GLY GLY ARG SEQRES 14 C 295 CYS LEU GLU VAL GLU GLY HIS ARG LEU CYS HIS CYS PRO SEQRES 15 C 295 VAL GLY TYR THR GLY PRO PHE CYS ASP VAL ASP THR LYS SEQRES 16 C 295 ALA SER CYS TYR ASP GLY ARG GLY LEU SER TYR ARG GLY SEQRES 17 C 295 LEU ALA ARG THR THR LEU SER GLY ALA PRO CYS GLN PRO SEQRES 18 C 295 TRP ALA SER GLU ALA THR TYR ARG ASN VAL THR ALA GLU SEQRES 19 C 295 GLN ALA ARG ASN TRP GLY LEU GLY GLY HIS ALA PHE CYS SEQRES 20 C 295 ARG ASN PRO ASP ASN ASP ILE ARG PRO TRP CYS PHE VAL SEQRES 21 C 295 LEU ASN ARG ASP ARG LEU SER TRP GLU TYR CYS ASP LEU SEQRES 22 C 295 ALA GLN CYS GLN THR PRO THR GLN ALA ALA PRO PRO THR SEQRES 23 C 295 PRO VAL SER PRO ARG LEU HIS VAL PRO HELIX 1 AA1 ASP A 77 HIS A 82 1 6 HELIX 2 AA2 GLY A 108 GLN A 112 5 5 HELIX 3 AA3 HIS B 78 HIS B 82 1 5 HELIX 4 AA4 ASP C 77 HIS C 82 1 6 HELIX 5 AA5 PRO C 119 LEU C 122 5 4 HELIX 6 AA6 THR C 232 GLU C 234 5 3 HELIX 7 AA7 GLN C 235 GLY C 240 1 6 SHEET 1 AA1 2 PHE A 32 GLN A 33 0 SHEET 2 AA1 2 LEU A 38 TYR A 39 -1 O TYR A 39 N PHE A 32 SHEET 1 AA2 2 TRP A 53 ALA A 55 0 SHEET 2 AA2 2 TRP A 66 TYR A 68 -1 O GLY A 67 N CYS A 54 SHEET 1 AA3 2 THR A 90 MET A 94 0 SHEET 2 AA3 2 GLY A 97 LEU A 101 -1 O LEU A 101 N THR A 90 SHEET 1 AA4 2 CYS A 116 GLU A 118 0 SHEET 2 AA4 2 ARG A 123 PHE A 125 -1 O ARG A 123 N GLU A 118 SHEET 1 AA5 3 ILE A 130 THR A 134 0 SHEET 2 AA5 3 VAL A 139 LYS A 145 -1 O ALA A 140 N ARG A 133 SHEET 3 AA5 3 ASP A 148 HIS A 150 -1 O HIS A 150 N GLN A 143 SHEET 1 AA6 3 ILE A 130 THR A 134 0 SHEET 2 AA6 3 VAL A 139 LYS A 145 -1 O ALA A 140 N ARG A 133 SHEET 3 AA6 3 ARG A 153 LEU A 154 -1 O LEU A 154 N VAL A 139 SHEET 1 AA7 3 GLN A 157 ALA A 158 0 SHEET 2 AA7 3 ARG A 169 GLU A 172 -1 O GLU A 172 N GLN A 157 SHEET 3 AA7 3 ARG A 177 HIS A 180 -1 O LEU A 178 N LEU A 171 SHEET 1 AA8 2 TYR A 185 THR A 186 0 SHEET 2 AA8 2 VAL A 192 ASP A 193 -1 O VAL A 192 N THR A 186 SHEET 1 AA9 2 TRP A 257 LEU A 261 0 SHEET 2 AA9 2 LEU A 266 TYR A 270 -1 O SER A 267 N VAL A 260 SHEET 1 AB1 2 THR B 90 ASN B 93 0 SHEET 2 AB1 2 PRO B 98 LEU B 101 -1 O HIS B 99 N VAL B 92 SHEET 1 AB2 2 LEU B 106 THR B 107 0 SHEET 2 AB2 2 LYS B 113 GLU B 114 -1 O LYS B 113 N THR B 107 SHEET 1 AB3 2 CYS B 116 GLU B 118 0 SHEET 2 AB3 2 ARG B 123 PHE B 125 -1 O ARG B 123 N GLU B 118 SHEET 1 AB4 3 ILE B 130 THR B 134 0 SHEET 2 AB4 3 VAL B 139 LYS B 145 -1 O ALA B 140 N ARG B 133 SHEET 3 AB4 3 ASP B 148 LEU B 154 -1 O GLN B 152 N ARG B 141 SHEET 1 AB5 3 GLN B 157 ALA B 158 0 SHEET 2 AB5 3 ARG B 169 GLU B 172 -1 O GLU B 172 N GLN B 157 SHEET 3 AB5 3 ARG B 177 HIS B 180 -1 O LEU B 178 N LEU B 171 SHEET 1 AB6 2 TYR B 185 THR B 186 0 SHEET 2 AB6 2 VAL B 192 ASP B 193 -1 O VAL B 192 N THR B 186 SHEET 1 AB7 2 CYS B 198 TYR B 199 0 SHEET 2 AB7 2 ALA B 274 GLN B 275 1 O ALA B 274 N TYR B 199 SHEET 1 AB8 2 TRP B 257 LEU B 261 0 SHEET 2 AB8 2 LEU B 266 TYR B 270 -1 O SER B 267 N VAL B 260 SHEET 1 AB9 2 PHE C 32 GLN C 33 0 SHEET 2 AB9 2 LEU C 38 TYR C 39 -1 O TYR C 39 N PHE C 32 SHEET 1 AC1 2 TRP C 53 ALA C 55 0 SHEET 2 AC1 2 TRP C 66 TYR C 68 -1 O GLY C 67 N CYS C 54 SHEET 1 AC2 2 THR C 90 MET C 94 0 SHEET 2 AC2 2 GLY C 97 LEU C 101 -1 O HIS C 99 N VAL C 92 SHEET 1 AC3 2 CYS C 116 GLU C 118 0 SHEET 2 AC3 2 ARG C 123 PHE C 125 -1 O PHE C 125 N CYS C 116 SHEET 1 AC4 3 ILE C 130 THR C 134 0 SHEET 2 AC4 3 VAL C 139 LYS C 145 -1 O ALA C 140 N ARG C 133 SHEET 3 AC4 3 ASP C 148 HIS C 150 -1 O HIS C 150 N GLN C 143 SHEET 1 AC5 3 ILE C 130 THR C 134 0 SHEET 2 AC5 3 VAL C 139 LYS C 145 -1 O ALA C 140 N ARG C 133 SHEET 3 AC5 3 ARG C 153 LEU C 154 -1 O LEU C 154 N VAL C 139 SHEET 1 AC6 2 ARG C 169 GLU C 172 0 SHEET 2 AC6 2 ARG C 177 HIS C 180 -1 O LEU C 178 N LEU C 171 SHEET 1 AC7 2 TYR C 185 THR C 186 0 SHEET 2 AC7 2 VAL C 192 ASP C 193 -1 O VAL C 192 N THR C 186 SHEET 1 AC8 2 CYS C 198 TYR C 199 0 SHEET 2 AC8 2 ALA C 274 GLN C 275 1 O ALA C 274 N TYR C 199 SHEET 1 AC9 2 TRP C 257 PHE C 259 0 SHEET 2 AC9 2 TRP C 268 TYR C 270 -1 O GLU C 269 N CYS C 258 SSBOND 1 CYS A 28 CYS A 54 1555 1555 2.07 SSBOND 2 CYS A 42 CYS A 69 1555 1555 2.04 SSBOND 3 CYS A 79 CYS A 91 1555 1555 2.05 SSBOND 4 CYS A 85 CYS A 100 1555 1555 2.01 SSBOND 5 CYS A 102 CYS A 111 1555 1555 2.01 SSBOND 6 CYS A 116 CYS A 144 1555 1555 2.06 SSBOND 7 CYS A 142 CYS A 151 1555 1555 2.04 SSBOND 8 CYS A 159 CYS A 170 1555 1555 2.10 SSBOND 9 CYS A 164 CYS A 179 1555 1555 2.02 SSBOND 10 CYS A 181 CYS A 190 1555 1555 2.03 SSBOND 11 CYS A 198 CYS A 276 1555 1555 2.06 SSBOND 12 CYS A 219 CYS A 258 1555 1555 2.03 SSBOND 13 CYS A 247 CYS A 271 1555 1555 2.05 SSBOND 14 CYS B 79 CYS B 91 1555 1555 2.04 SSBOND 15 CYS B 85 CYS B 100 1555 1555 2.04 SSBOND 16 CYS B 102 CYS B 111 1555 1555 2.04 SSBOND 17 CYS B 116 CYS B 144 1555 1555 2.03 SSBOND 18 CYS B 142 CYS B 151 1555 1555 2.05 SSBOND 19 CYS B 159 CYS B 170 1555 1555 2.07 SSBOND 20 CYS B 164 CYS B 179 1555 1555 2.05 SSBOND 21 CYS B 181 CYS B 190 1555 1555 2.06 SSBOND 22 CYS B 198 CYS B 276 1555 1555 2.05 SSBOND 23 CYS B 219 CYS B 258 1555 1555 2.05 SSBOND 24 CYS B 247 CYS B 271 1555 1555 2.01 SSBOND 25 CYS C 28 CYS C 54 1555 1555 2.06 SSBOND 26 CYS C 42 CYS C 69 1555 1555 2.05 SSBOND 27 CYS C 79 CYS C 91 1555 1555 2.07 SSBOND 28 CYS C 85 CYS C 100 1555 1555 2.07 SSBOND 29 CYS C 102 CYS C 111 1555 1555 2.05 SSBOND 30 CYS C 116 CYS C 144 1555 1555 2.04 SSBOND 31 CYS C 142 CYS C 151 1555 1555 2.06 SSBOND 32 CYS C 159 CYS C 170 1555 1555 2.09 SSBOND 33 CYS C 164 CYS C 179 1555 1555 2.05 SSBOND 34 CYS C 181 CYS C 190 1555 1555 2.05 SSBOND 35 CYS C 198 CYS C 276 1555 1555 2.03 SSBOND 36 CYS C 219 CYS C 258 1555 1555 2.06 SSBOND 37 CYS C 247 CYS C 271 1555 1555 2.05 CRYST1 144.536 144.594 155.935 90.00 90.00 90.00 I 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006413 0.00000