HEADER HYDROLASE 21-APR-23 8OTV TITLE CRYSTAL STRUCTURE OF NUDT14 COMPLEXED WITH NOVEL COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE NUDT14; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDPG PYROPHOSPHATASE,UGPPASE,NUCLEOSIDE DIPHOSPHATE-LINKED COMPND 5 MOIETY X MOTIF 14,NUDIX MOTIF 14; COMPND 6 EC: 3.6.1.45; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CN(CC1)CCC1N2C3=NC=NC(N)=C3C(C4=CC=C(OC5=CC=CC=C5) COMPND 9 C=C4)=N2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT14, UGPP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYDROLASE INHIBITOR, HYDROLASE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR E.BALIKCI,C.FEYERHERM,W.BRADSHAW,R.SEUPEL,P.E.BRENNAN,C.BOUNTRA,F.VON AUTHOR 2 DELFT,K.HUBER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 22-MAY-24 8OTV 1 JRNL REVDAT 1 01-MAY-24 8OTV 0 JRNL AUTH E.BALIKCI,A.M.C.MARQUES,L.G.BAUER,R.SEUPEL,J.BENNETT,B.RAUX, JRNL AUTH 2 K.BUCHAN,K.SIMELIS,U.SINGH,C.ROGERS,J.WARD,C.CHENG, JRNL AUTH 3 T.SZOMMER,K.SCHUTZENHOFER,J.M.ELKINS,D.L.SLOMAN,I.AHEL, JRNL AUTH 4 O.FEDOROV,P.E.BRENNAN,K.V.M.HUBER JRNL TITL UNEXPECTED NONCOVALENT OFF-TARGET ACTIVITY OF CLINICAL BTK JRNL TITL 2 INHIBITORS LEADS TO DISCOVERY OF A DUAL NUDT5/14 ANTAGONIST. JRNL REF J.MED.CHEM. V. 67 7245 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 38635563 JRNL DOI 10.1021/ACS.JMEDCHEM.4C00072 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 45224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0500 - 4.3900 1.00 3366 153 0.1685 0.1985 REMARK 3 2 4.3900 - 3.4800 1.00 3214 146 0.1667 0.2142 REMARK 3 3 3.4800 - 3.0400 1.00 3180 145 0.2000 0.2328 REMARK 3 4 3.0400 - 2.7600 1.00 3160 144 0.2256 0.2614 REMARK 3 5 2.7600 - 2.5600 1.00 3141 143 0.2246 0.2554 REMARK 3 6 2.5600 - 2.4100 1.00 3146 144 0.2210 0.2478 REMARK 3 7 2.4100 - 2.2900 1.00 3132 143 0.2113 0.2516 REMARK 3 8 2.2900 - 2.1900 1.00 3131 142 0.2205 0.2410 REMARK 3 9 2.1900 - 2.1100 1.00 3091 142 0.2598 0.2593 REMARK 3 10 2.1100 - 2.0400 1.00 3122 142 0.2603 0.3209 REMARK 3 11 2.0400 - 1.9700 1.00 3100 141 0.2894 0.2704 REMARK 3 12 1.9700 - 1.9200 1.00 3115 143 0.3324 0.3597 REMARK 3 13 1.9200 - 1.8700 0.96 2967 134 0.3851 0.4241 REMARK 3 14 1.8700 - 1.8200 0.77 2385 112 0.4304 0.4223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3358 REMARK 3 ANGLE : 0.748 4572 REMARK 3 CHIRALITY : 0.047 504 REMARK 3 PLANARITY : 0.006 589 REMARK 3 DIHEDRAL : 6.865 519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2471 18.8056 -15.3149 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2333 REMARK 3 T33: 0.2379 T12: -0.0425 REMARK 3 T13: -0.0326 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 6.7647 L22: 4.8797 REMARK 3 L33: 2.7122 L12: -3.6685 REMARK 3 L13: -1.8151 L23: 1.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.0386 S13: 0.2761 REMARK 3 S21: 0.1167 S22: -0.0355 S23: 0.0876 REMARK 3 S31: -0.0485 S32: 0.1725 S33: 0.0405 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1891 -2.2225 -21.5896 REMARK 3 T TENSOR REMARK 3 T11: 0.3356 T22: 0.2867 REMARK 3 T33: 0.1876 T12: 0.0510 REMARK 3 T13: 0.0039 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 3.4270 L22: 3.5980 REMARK 3 L33: 2.1822 L12: 0.9956 REMARK 3 L13: 1.4673 L23: 1.8953 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0718 S13: -0.1109 REMARK 3 S21: 0.3176 S22: 0.0549 S23: -0.2916 REMARK 3 S31: 0.3268 S32: 0.1763 S33: -0.0749 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1633 14.6703 -7.6102 REMARK 3 T TENSOR REMARK 3 T11: 0.6746 T22: 0.6465 REMARK 3 T33: 0.6319 T12: -0.0063 REMARK 3 T13: -0.1640 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 4.7324 L22: 3.3353 REMARK 3 L33: 4.7801 L12: 2.6682 REMARK 3 L13: -3.5269 L23: -0.1613 REMARK 3 S TENSOR REMARK 3 S11: 0.3768 S12: 0.5395 S13: 0.6917 REMARK 3 S21: 0.5847 S22: 0.8668 S23: -0.2145 REMARK 3 S31: 0.0481 S32: 2.0863 S33: -1.2009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7486 6.2477 -21.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.3983 REMARK 3 T33: 0.3431 T12: 0.0622 REMARK 3 T13: 0.0045 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 5.0932 L22: 3.0745 REMARK 3 L33: 3.1866 L12: 0.5052 REMARK 3 L13: 2.9429 L23: 1.6282 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: 0.1438 S13: 0.3423 REMARK 3 S21: -0.0093 S22: 0.0732 S23: -0.5095 REMARK 3 S31: 0.0606 S32: 0.4839 S33: 0.0175 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4526 -5.4687 -25.9757 REMARK 3 T TENSOR REMARK 3 T11: 0.2777 T22: 0.2692 REMARK 3 T33: 0.2064 T12: 0.0495 REMARK 3 T13: -0.0396 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.8971 L22: 2.9858 REMARK 3 L33: 2.9417 L12: -0.4711 REMARK 3 L13: -0.9210 L23: 0.8457 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0796 S13: -0.1251 REMARK 3 S21: 0.0953 S22: 0.0133 S23: -0.0346 REMARK 3 S31: 0.2770 S32: 0.0877 S33: 0.0263 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7456 12.8103 -12.6869 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.2595 REMARK 3 T33: 0.2529 T12: 0.0028 REMARK 3 T13: -0.0238 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.0884 L22: 1.3033 REMARK 3 L33: 1.0648 L12: 0.5991 REMARK 3 L13: 0.0429 L23: -0.3058 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0270 S13: 0.1023 REMARK 3 S21: 0.1002 S22: -0.0095 S23: 0.0603 REMARK 3 S31: -0.1572 S32: 0.0887 S33: -0.0637 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9651 9.6559 -6.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.3678 T22: 0.2994 REMARK 3 T33: 0.2576 T12: -0.0356 REMARK 3 T13: -0.0344 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.7358 L22: 1.6256 REMARK 3 L33: 1.8856 L12: -0.0997 REMARK 3 L13: 0.1175 L23: -0.3500 REMARK 3 S TENSOR REMARK 3 S11: -0.0950 S12: -0.0346 S13: 0.1439 REMARK 3 S21: 0.1437 S22: 0.0486 S23: -0.0637 REMARK 3 S31: -0.1872 S32: 0.2442 S33: 0.0481 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2923 -0.5143 -5.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.2333 REMARK 3 T33: 0.2610 T12: 0.0255 REMARK 3 T13: -0.0275 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 4.6571 L22: 2.2700 REMARK 3 L33: 4.2435 L12: -1.1818 REMARK 3 L13: -0.5713 L23: 0.4940 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.1431 S13: -0.3030 REMARK 3 S21: -0.0367 S22: -0.1529 S23: 0.2976 REMARK 3 S31: -0.1623 S32: -0.4008 S33: 0.0649 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292130000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 556903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 54.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AIMLESS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 25% PEG3350, REMARK 280 0.1M BIS-TRIS PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.04950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.48350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.04950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.48350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 83 REMARK 465 ASP A 84 REMARK 465 GLY A 85 REMARK 465 VAL A 173 REMARK 465 GLU A 174 REMARK 465 GLU A 175 REMARK 465 GLY A 176 REMARK 465 GLU A 177 REMARK 465 ASP A 220 REMARK 465 LEU A 221 REMARK 465 GLN A 222 REMARK 465 SER B 0 REMARK 465 GLY B 169 REMARK 465 GLY B 170 REMARK 465 GLY B 171 REMARK 465 LEU B 172 REMARK 465 VAL B 173 REMARK 465 GLU B 174 REMARK 465 GLU B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 LEU B 221 REMARK 465 GLN B 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 ARG A 165 NE CZ NH1 NH2 REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 ASP B 84 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 13 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 -99.98 -90.34 REMARK 500 ALA B 14 -91.88 -89.42 REMARK 500 SER B 15 123.48 71.99 REMARK 500 GLN B 27 -81.03 -108.98 REMARK 500 ARG B 73 -40.62 74.09 REMARK 500 ASP B 84 30.11 -96.44 REMARK 500 ALA B 92 -145.50 -121.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 500 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 6.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 510 O REMARK 620 2 GLU B 126 OE2 138.5 REMARK 620 3 HOH B 413 O 80.4 97.5 REMARK 620 4 HOH B 442 O 84.9 85.1 160.5 REMARK 620 5 HOH B 455 O 67.7 71.6 76.0 86.7 REMARK 620 N 1 2 3 4 DBREF 8OTV A 1 222 UNP O95848 NUD14_HUMAN 1 222 DBREF 8OTV B 1 222 UNP O95848 NUD14_HUMAN 1 222 SEQADV 8OTV SER A 0 UNP O95848 EXPRESSION TAG SEQADV 8OTV SER B 0 UNP O95848 EXPRESSION TAG SEQRES 1 A 223 SER MET GLU ARG ILE GLU GLY ALA SER VAL GLY ARG CYS SEQRES 2 A 223 ALA ALA SER PRO TYR LEU ARG PRO LEU THR LEU HIS TYR SEQRES 3 A 223 ARG GLN ASN GLY ALA GLN LYS SER TRP ASP PHE MET LYS SEQRES 4 A 223 THR HIS ASP SER VAL THR VAL LEU LEU PHE ASN SER SER SEQRES 5 A 223 ARG ARG SER LEU VAL LEU VAL LYS GLN PHE ARG PRO ALA SEQRES 6 A 223 VAL TYR ALA GLY GLU VAL GLU ARG ARG PHE PRO GLY SER SEQRES 7 A 223 LEU ALA ALA VAL ASP GLN ASP GLY PRO ARG GLU LEU GLN SEQRES 8 A 223 PRO ALA LEU PRO GLY SER ALA GLY VAL THR VAL GLU LEU SEQRES 9 A 223 CYS ALA GLY LEU VAL ASP GLN PRO GLY LEU SER LEU GLU SEQRES 10 A 223 GLU VAL ALA CYS LYS GLU ALA TRP GLU GLU CYS GLY TYR SEQRES 11 A 223 HIS LEU ALA PRO SER ASP LEU ARG ARG VAL ALA THR TYR SEQRES 12 A 223 TRP SER GLY VAL GLY LEU THR GLY SER ARG GLN THR MET SEQRES 13 A 223 PHE TYR THR GLU VAL THR ASP ALA GLN ARG SER GLY PRO SEQRES 14 A 223 GLY GLY GLY LEU VAL GLU GLU GLY GLU LEU ILE GLU VAL SEQRES 15 A 223 VAL HIS LEU PRO LEU GLU GLY ALA GLN ALA PHE ALA ASP SEQRES 16 A 223 ASP PRO ASP ILE PRO LYS THR LEU GLY VAL ILE PHE GLY SEQRES 17 A 223 VAL SER TRP PHE LEU SER GLN VAL ALA PRO ASN LEU ASP SEQRES 18 A 223 LEU GLN SEQRES 1 B 223 SER MET GLU ARG ILE GLU GLY ALA SER VAL GLY ARG CYS SEQRES 2 B 223 ALA ALA SER PRO TYR LEU ARG PRO LEU THR LEU HIS TYR SEQRES 3 B 223 ARG GLN ASN GLY ALA GLN LYS SER TRP ASP PHE MET LYS SEQRES 4 B 223 THR HIS ASP SER VAL THR VAL LEU LEU PHE ASN SER SER SEQRES 5 B 223 ARG ARG SER LEU VAL LEU VAL LYS GLN PHE ARG PRO ALA SEQRES 6 B 223 VAL TYR ALA GLY GLU VAL GLU ARG ARG PHE PRO GLY SER SEQRES 7 B 223 LEU ALA ALA VAL ASP GLN ASP GLY PRO ARG GLU LEU GLN SEQRES 8 B 223 PRO ALA LEU PRO GLY SER ALA GLY VAL THR VAL GLU LEU SEQRES 9 B 223 CYS ALA GLY LEU VAL ASP GLN PRO GLY LEU SER LEU GLU SEQRES 10 B 223 GLU VAL ALA CYS LYS GLU ALA TRP GLU GLU CYS GLY TYR SEQRES 11 B 223 HIS LEU ALA PRO SER ASP LEU ARG ARG VAL ALA THR TYR SEQRES 12 B 223 TRP SER GLY VAL GLY LEU THR GLY SER ARG GLN THR MET SEQRES 13 B 223 PHE TYR THR GLU VAL THR ASP ALA GLN ARG SER GLY PRO SEQRES 14 B 223 GLY GLY GLY LEU VAL GLU GLU GLY GLU LEU ILE GLU VAL SEQRES 15 B 223 VAL HIS LEU PRO LEU GLU GLY ALA GLN ALA PHE ALA ASP SEQRES 16 B 223 ASP PRO ASP ILE PRO LYS THR LEU GLY VAL ILE PHE GLY SEQRES 17 B 223 VAL SER TRP PHE LEU SER GLN VAL ALA PRO ASN LEU ASP SEQRES 18 B 223 LEU GLN HET W0O A 301 30 HET DMS A 302 4 HET MG B 301 1 HET W0O B 302 30 HETNAM W0O 1-(1-METHYLPIPERIDIN-4-YL)-3-(4-PHENOXYPHENYL) HETNAM 2 W0O PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM MG MAGNESIUM ION FORMUL 3 W0O 2(C23 H24 N6 O) FORMUL 4 DMS C2 H6 O S FORMUL 5 MG MG 2+ FORMUL 7 HOH *216(H2 O) HELIX 1 AA1 ARG A 62 PHE A 74 1 13 HELIX 2 AA2 PRO A 94 ALA A 97 5 4 HELIX 3 AA3 SER A 114 GLY A 128 1 15 HELIX 4 AA4 ALA A 132 LEU A 136 5 5 HELIX 5 AA5 THR A 161 ARG A 165 5 5 HELIX 6 AA6 GLY A 188 ASP A 195 1 8 HELIX 7 AA7 THR A 201 VAL A 215 1 15 HELIX 8 AA8 ALA A 216 LEU A 219 5 4 HELIX 9 AA9 ARG B 62 ARG B 72 1 11 HELIX 10 AB1 PRO B 94 ALA B 97 5 4 HELIX 11 AB2 SER B 114 GLY B 128 1 15 HELIX 12 AB3 ALA B 132 LEU B 136 5 5 HELIX 13 AB4 THR B 161 ARG B 165 5 5 HELIX 14 AB5 GLY B 188 ASP B 195 1 8 HELIX 15 AB6 THR B 201 VAL B 215 1 15 HELIX 16 AB7 ALA B 216 LEU B 219 5 4 SHEET 1 AA1 4 ARG A 87 GLU A 88 0 SHEET 2 AA1 4 GLU A 5 ARG A 11 -1 N VAL A 9 O ARG A 87 SHEET 3 AA1 4 ARG B 19 ARG B 26 -1 O HIS B 24 N SER A 8 SHEET 4 AA1 4 GLN B 31 LYS B 38 -1 O LYS B 32 N TYR B 25 SHEET 1 AA2 4 ALA A 30 MET A 37 0 SHEET 2 AA2 4 PRO A 20 GLN A 27 -1 N LEU A 21 O PHE A 36 SHEET 3 AA2 4 ILE B 4 ARG B 11 -1 O SER B 8 N HIS A 24 SHEET 4 AA2 4 ARG B 87 GLU B 88 -1 O ARG B 87 N VAL B 9 SHEET 1 AA3 5 VAL A 99 GLU A 102 0 SHEET 2 AA3 5 SER A 54 PHE A 61 -1 N VAL A 58 O GLU A 102 SHEET 3 AA3 5 SER A 42 ASN A 49 -1 N ASN A 49 O SER A 54 SHEET 4 AA3 5 SER A 151 VAL A 160 1 O VAL A 160 N PHE A 48 SHEET 5 AA3 5 ARG A 137 SER A 144 -1 N VAL A 139 O MET A 155 SHEET 1 AA4 4 CYS A 104 LEU A 107 0 SHEET 2 AA4 4 SER A 42 ASN A 49 -1 N VAL A 43 O GLY A 106 SHEET 3 AA4 4 SER A 54 PHE A 61 -1 O SER A 54 N ASN A 49 SHEET 4 AA4 4 ILE A 179 PRO A 185 -1 O VAL A 182 N LEU A 57 SHEET 1 AA5 5 VAL B 99 GLU B 102 0 SHEET 2 AA5 5 SER B 54 PHE B 61 -1 N VAL B 58 O GLU B 102 SHEET 3 AA5 5 SER B 42 ASN B 49 -1 N LEU B 47 O VAL B 56 SHEET 4 AA5 5 ARG B 152 VAL B 160 1 O PHE B 156 N THR B 44 SHEET 5 AA5 5 ARG B 137 TRP B 143 -1 N VAL B 139 O MET B 155 SHEET 1 AA6 4 CYS B 104 LEU B 107 0 SHEET 2 AA6 4 SER B 42 ASN B 49 -1 N VAL B 45 O CYS B 104 SHEET 3 AA6 4 SER B 54 PHE B 61 -1 O VAL B 56 N LEU B 47 SHEET 4 AA6 4 GLU B 180 PRO B 185 -1 O VAL B 182 N LEU B 57 LINK O HOH A 510 MG MG B 301 1555 1555 2.67 LINK OE2 GLU B 126 MG MG B 301 1555 1555 2.61 LINK MG MG B 301 O HOH B 413 1555 1555 2.41 LINK MG MG B 301 O HOH B 442 1555 1555 2.53 LINK MG MG B 301 O HOH B 455 1555 1555 2.55 CISPEP 1 GLN A 90 PRO A 91 0 2.10 CISPEP 2 GLN B 90 PRO B 91 0 3.66 CRYST1 51.250 90.967 108.099 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009251 0.00000