HEADER RNA BINDING PROTEIN 22-APR-23 8OU8 TITLE CRYSTAL STRUCTURE OF E. COLI THREONYL TRNA SYNTHETASE IN COMPLEX WITH TITLE 2 A TM84 ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: D, A; COMPND 4 SYNONYM: THREONYL-TRNA SYNTHETASE,THRRS; COMPND 5 EC: 6.1.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: LIG DMS EDO SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI IAI1; SOURCE 3 ORGANISM_TAXID: 585034; SOURCE 4 GENE: THRS, ECIAI1_1775; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS THREONYL TRNA SYNTHETASE, E. COLI, INHIBITOR, COMPLEX, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.RODRIGUEZ BUITRAGO,E.PARISINI,J.AIGARS REVDAT 3 06-SEP-23 8OU8 1 REMARK REVDAT 2 19-JUL-23 8OU8 1 JRNL REVDAT 1 12-JUL-23 8OU8 0 JRNL AUTH J.A.R.BUITRAGO,G.LEITIS,I.KANEPE-LAPSA,A.RUDNICKIHA, JRNL AUTH 2 E.PARISINI,A.JIRGENSONS JRNL TITL SYNTHESIS AND EVALUATION OF AN AGROCIN 84 TOXIC MOIETY JRNL TITL 2 (TM84) ANALOGUE AS A MALARIAL THREONYL TRNA SYNTHETASE JRNL TITL 3 INHIBITOR. JRNL REF ORG.BIOMOL.CHEM. V. 21 5433 2023 JRNL REFN ESSN 1477-0539 JRNL PMID 37335076 JRNL DOI 10.1039/D3OB00670K REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC V1.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 68.2 REMARK 3 NUMBER OF REFLECTIONS : 43429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2397 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.606 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8OU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292129994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2.MULTIPLEX V1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V1.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45827 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 78.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V1.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 4000, 21% (V/V) MPD, AND REMARK 280 0.1 M SODIUM CITRATE, PH 5.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 ARG D 1 REMARK 465 GLU D 401 REMARK 465 LEU D 402 REMARK 465 GLU D 403 REMARK 465 HIS D 404 REMARK 465 HIS D 405 REMARK 465 HIS D 406 REMARK 465 HIS D 407 REMARK 465 HIS D 408 REMARK 465 HIS D 409 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 ARG A 1 REMARK 465 LEU A 402 REMARK 465 GLU A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 19 82.54 -151.81 REMARK 500 GLN D 48 66.73 64.98 REMARK 500 TYR D 72 20.19 -155.06 REMARK 500 CYS D 239 -100.67 -109.47 REMARK 500 ASN D 261 18.12 98.09 REMARK 500 GLN D 398 -169.89 -106.88 REMARK 500 LEU D 399 76.12 -56.76 REMARK 500 GLN A 48 63.60 64.71 REMARK 500 LYS A 73 -70.02 -28.84 REMARK 500 CYS A 239 -94.70 -113.55 REMARK 500 ARG A 348 31.50 70.19 REMARK 500 GLU A 400 -80.88 77.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS D 224 ILE D 225 144.47 REMARK 500 LYS D 397 GLN D 398 -137.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 41 0.12 SIDE CHAIN REMARK 500 ARG D 60 0.12 SIDE CHAIN REMARK 500 ARG D 84 0.20 SIDE CHAIN REMARK 500 ARG D 136 0.11 SIDE CHAIN REMARK 500 ARG D 153 0.20 SIDE CHAIN REMARK 500 ARG D 235 0.15 SIDE CHAIN REMARK 500 ARG D 271 0.12 SIDE CHAIN REMARK 500 ARG D 348 0.10 SIDE CHAIN REMARK 500 ARG D 392 0.14 SIDE CHAIN REMARK 500 ARG A 60 0.08 SIDE CHAIN REMARK 500 ARG A 84 0.24 SIDE CHAIN REMARK 500 ARG A 113 0.08 SIDE CHAIN REMARK 500 ARG A 122 0.12 SIDE CHAIN REMARK 500 ARG A 153 0.20 SIDE CHAIN REMARK 500 ARG A 347 0.15 SIDE CHAIN REMARK 500 ARG A 368 0.19 SIDE CHAIN REMARK 500 ARG A 371 0.10 SIDE CHAIN REMARK 500 ARG A 392 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 93 SG REMARK 620 2 HIS D 144 NE2 95.2 REMARK 620 3 HIS D 270 ND1 102.3 98.8 REMARK 620 4 W0U D 501 N7 93.2 143.6 113.9 REMARK 620 5 W0U D 501 O7 144.5 85.4 112.7 67.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 HIS A 144 NE2 91.3 REMARK 620 3 HIS A 270 ND1 101.5 97.1 REMARK 620 4 W0U A 502 N7 87.8 148.5 113.9 REMARK 620 5 W0U A 502 O7 148.0 93.7 109.2 71.9 REMARK 620 N 1 2 3 4 DBREF 8OU8 D 1 401 UNP B7M1C7 SYT_ECO8A 242 642 DBREF 8OU8 A 1 401 UNP B7M1C7 SYT_ECO8A 242 642 SEQADV 8OU8 MET D -1 UNP B7M1C7 INITIATING METHIONINE SEQADV 8OU8 ALA D 0 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 LEU D 402 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 GLU D 403 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS D 404 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS D 405 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS D 406 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS D 407 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS D 408 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS D 409 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 MET A -1 UNP B7M1C7 INITIATING METHIONINE SEQADV 8OU8 ALA A 0 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 LEU A 402 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 GLU A 403 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS A 404 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS A 405 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS A 406 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS A 407 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS A 408 UNP B7M1C7 EXPRESSION TAG SEQADV 8OU8 HIS A 409 UNP B7M1C7 EXPRESSION TAG SEQRES 1 D 411 MET ALA ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 D 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 D 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 D 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 D 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 D 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 D 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 D 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 D 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 D 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY SER SEQRES 11 D 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 D 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 D 411 GLU VAL ASN GLY CYS ILE ARG LEU VAL TYR ASP MET TYR SEQRES 14 D 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 D 411 THR ARG PRO GLU LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 D 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 D 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 D 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 D 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 D 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 D 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 D 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 D 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 D 411 PRO VAL GLN VAL VAL ILE MET ASN ILE THR ASP SER GLN SEQRES 25 D 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU SER ASN SEQRES 26 D 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 D 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 D 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU SER SEQRES 29 D 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 D 411 GLY SER MET ASP VAL ASN GLU VAL ILE GLU LYS LEU GLN SEQRES 31 D 411 GLN GLU ILE ARG SER ARG SER LEU LYS GLN LEU GLU GLU SEQRES 32 D 411 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 411 MET ALA ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 A 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 A 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 A 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 A 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 A 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 A 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 A 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 A 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 A 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY SER SEQRES 11 A 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 A 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 A 411 GLU VAL ASN GLY CYS ILE ARG LEU VAL TYR ASP MET TYR SEQRES 14 A 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 A 411 THR ARG PRO GLU LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 A 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 A 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 A 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 A 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 A 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 A 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 A 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 A 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 A 411 PRO VAL GLN VAL VAL ILE MET ASN ILE THR ASP SER GLN SEQRES 25 A 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU SER ASN SEQRES 26 A 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 A 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 A 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU SER SEQRES 29 A 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 A 411 GLY SER MET ASP VAL ASN GLU VAL ILE GLU LYS LEU GLN SEQRES 31 A 411 GLN GLU ILE ARG SER ARG SER LEU LYS GLN LEU GLU GLU SEQRES 32 A 411 LEU GLU HIS HIS HIS HIS HIS HIS HET W0U D 501 29 HET DMS D 502 4 HET ZN D 503 1 HET EDO A 501 4 HET W0U A 502 29 HET DMS A 503 4 HET EDO A 504 4 HET ZN A 505 1 HETNAM W0U [(2~{S},4~{S},5~{R})-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL- HETNAM 2 W0U OXOLAN-2-YL]METHOXY-~{N}-[(2~{S},3~{S})-2-AZANYL-3- HETNAM 3 W0U OXIDANYL-BUTANOYL]PHOSPHONAMIDIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 W0U 2(C14 H22 N7 O7 P) FORMUL 4 DMS 2(C2 H6 O S) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 11 HOH *217(H2 O) HELIX 1 AA1 ASP D 2 LEU D 10 1 9 HELIX 2 AA2 HIS D 26 TYR D 47 1 22 HELIX 3 AA3 ARG D 60 THR D 66 1 7 HELIX 4 AA4 GLY D 67 TYR D 72 1 6 HELIX 5 AA5 LYS D 73 MET D 76 5 4 HELIX 6 AA6 ASN D 92 GLN D 102 1 11 HELIX 7 AA7 SER D 106 LEU D 110 5 5 HELIX 8 AA8 PRO D 125 LEU D 129 5 5 HELIX 9 AA9 GLN D 151 THR D 169 1 19 HELIX 10 AB1 SER D 189 ASN D 207 1 19 HELIX 11 AB2 SER D 247 LEU D 252 1 6 HELIX 12 AB3 MET D 277 PHE D 288 1 12 HELIX 13 AB4 PRO D 293 ALA D 297 5 5 HELIX 14 AB5 THR D 307 SER D 309 5 3 HELIX 15 AB6 GLN D 310 ALA D 324 1 15 HELIX 16 AB7 LYS D 336 ARG D 347 1 12 HELIX 17 AB8 GLY D 356 GLY D 363 1 8 HELIX 18 AB9 VAL D 380 SER D 393 1 14 HELIX 19 AC1 HIS A 3 LEU A 10 1 8 HELIX 20 AC2 HIS A 26 TYR A 47 1 22 HELIX 21 AC3 ARG A 60 THR A 66 1 7 HELIX 22 AC4 GLY A 67 TYR A 72 1 6 HELIX 23 AC5 ASN A 92 ASN A 101 1 10 HELIX 24 AC6 PRO A 125 LEU A 129 5 5 HELIX 25 AC7 GLN A 151 PHE A 170 1 20 HELIX 26 AC8 SER A 189 ASN A 207 1 19 HELIX 27 AC9 SER A 247 LEU A 252 1 6 HELIX 28 AD1 MET A 277 ALA A 289 1 13 HELIX 29 AD2 THR A 307 SER A 309 5 3 HELIX 30 AD3 GLN A 310 ALA A 324 1 15 HELIX 31 AD4 LYS A 336 ARG A 347 1 12 HELIX 32 AD5 GLY A 356 GLY A 363 1 8 HELIX 33 AD6 VAL A 380 SER A 393 1 14 SHEET 1 AA1 2 TYR D 13 GLN D 16 0 SHEET 2 AA1 2 ALA D 19 TRP D 25 -1 O PHE D 24 N HIS D 14 SHEET 1 AA2 8 GLN D 50 GLU D 51 0 SHEET 2 AA2 8 LEU D 112 HIS D 121 1 O ARG D 113 N GLN D 50 SHEET 3 AA2 8 GLY D 137 CYS D 147 -1 O PHE D 146 N LEU D 112 SHEET 4 AA2 8 VAL D 267 SER D 276 -1 O VAL D 267 N CYS D 147 SHEET 5 AA2 8 ALA D 236 ASP D 245 -1 N GLN D 243 O HIS D 270 SHEET 6 AA2 8 LYS D 224 TYR D 230 -1 N ILE D 225 O VAL D 242 SHEET 7 AA2 8 VAL D 176 SER D 180 -1 N SER D 180 O LYS D 224 SHEET 8 AA2 8 PHE D 211 GLN D 214 1 O GLN D 214 N LEU D 179 SHEET 1 AA3 3 MET D 57 ASP D 59 0 SHEET 2 AA3 3 ARG D 84 ILE D 88 -1 O CYS D 87 N MET D 58 SHEET 3 AA3 3 PHE D 77 SER D 81 -1 N THR D 79 O TYR D 86 SHEET 1 AA4 2 TYR D 256 VAL D 257 0 SHEET 2 AA4 2 ARG D 263 LYS D 264 -1 O LYS D 264 N TYR D 256 SHEET 1 AA5 5 VAL D 328 ASP D 331 0 SHEET 2 AA5 5 VAL D 301 ASN D 305 1 N ILE D 303 O ASP D 331 SHEET 3 AA5 5 TYR D 351 CYS D 355 1 O LEU D 353 N MET D 304 SHEET 4 AA5 5 LYS D 364 THR D 369 -1 O ARG D 368 N MET D 352 SHEET 5 AA5 5 ASP D 374 ASP D 379 -1 O GLY D 376 N VAL D 367 SHEET 1 AA6 2 TYR A 13 HIS A 14 0 SHEET 2 AA6 2 PHE A 24 TRP A 25 -1 O PHE A 24 N HIS A 14 SHEET 1 AA7 8 GLN A 50 GLU A 51 0 SHEET 2 AA7 8 LEU A 112 HIS A 121 1 O ARG A 113 N GLN A 50 SHEET 3 AA7 8 GLY A 137 CYS A 147 -1 O PHE A 146 N LEU A 112 SHEET 4 AA7 8 VAL A 267 SER A 276 -1 O VAL A 267 N CYS A 147 SHEET 5 AA7 8 ALA A 236 ASP A 245 -1 N GLN A 243 O HIS A 270 SHEET 6 AA7 8 LYS A 224 TYR A 230 -1 N LEU A 229 O TRP A 237 SHEET 7 AA7 8 VAL A 176 SER A 180 -1 N SER A 180 O LYS A 224 SHEET 8 AA7 8 PHE A 211 GLN A 214 1 O GLN A 214 N LEU A 179 SHEET 1 AA8 3 MET A 57 ASP A 59 0 SHEET 2 AA8 3 ARG A 84 ILE A 88 -1 O CYS A 87 N MET A 58 SHEET 3 AA8 3 THR A 78 SER A 81 -1 N THR A 79 O TYR A 86 SHEET 1 AA9 2 TYR A 256 VAL A 257 0 SHEET 2 AA9 2 ARG A 263 LYS A 264 -1 O LYS A 264 N TYR A 256 SHEET 1 AB1 5 VAL A 328 ASP A 331 0 SHEET 2 AB1 5 VAL A 301 ASN A 305 1 N ILE A 303 O ASP A 331 SHEET 3 AB1 5 TYR A 351 CYS A 355 1 O LEU A 353 N VAL A 302 SHEET 4 AB1 5 LYS A 364 THR A 369 -1 O ALA A 366 N VAL A 354 SHEET 5 AB1 5 ASP A 374 ASP A 379 -1 O LEU A 375 N VAL A 367 LINK SG CYS D 93 ZN ZN D 503 1555 1555 2.35 LINK NE2 HIS D 144 ZN ZN D 503 1555 1555 2.05 LINK ND1 HIS D 270 ZN ZN D 503 1555 1555 2.20 LINK N7 W0U D 501 ZN ZN D 503 1555 1555 2.08 LINK O7 W0U D 501 ZN ZN D 503 1555 1555 2.10 LINK SG CYS A 93 ZN ZN A 505 1555 1555 2.38 LINK NE2 HIS A 144 ZN ZN A 505 1555 1555 2.12 LINK ND1 HIS A 270 ZN ZN A 505 1555 1555 2.19 LINK N7 W0U A 502 ZN ZN A 505 1555 1555 2.09 LINK O7 W0U A 502 ZN ZN A 505 1555 1555 2.10 CISPEP 1 LEU D 110 PRO D 111 0 -2.63 CISPEP 2 LEU A 110 PRO A 111 0 4.29 CRYST1 85.330 108.950 113.960 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011719 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008775 0.00000