HEADER OXIDOREDUCTASE 25-APR-23 8OV8 TITLE CRYSTAL STRUCTURE OF ENE-REDUCTASE 1 FROM BLACK POPLAR MUSHROOM IN TITLE 2 COMPLEX TO NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENE-REDUCTASE 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYCLOCYBE AEGERITA; SOURCE 3 ORGANISM_TAXID: 1973307; SOURCE 4 GENE: ENR1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NAD/NADP-DEPENDENT DEHYDROGENASE, ENE/YNE-REDUCTASE, FUNGAL SECONDARY KEYWDS 2 METABOLITES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.KORF,L.-O.ESSEN,D.KARRER,M.RUEHL REVDAT 1 15-MAY-24 8OV8 0 JRNL AUTH D.KARRER,E.WEDLER,C.MEWE,M.GAND,M.S.VOGT,L.KORF,L.-O.ESSEN, JRNL AUTH 2 M.RUEHL JRNL TITL SHIFTING THE SUBSTRATE SCOPE OF AN ENE/YNE-REDUCTASE BY LOOP JRNL TITL 2 ENGINEERING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_4788 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 67233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7900 - 5.5500 0.97 2728 137 0.1429 0.1706 REMARK 3 2 5.5500 - 4.4100 0.99 2664 143 0.1142 0.1354 REMARK 3 3 4.4100 - 3.8500 0.99 2612 160 0.1207 0.1615 REMARK 3 4 3.8500 - 3.5000 0.99 2588 145 0.1437 0.1641 REMARK 3 5 3.5000 - 3.2500 0.97 2513 159 0.1646 0.2333 REMARK 3 6 3.2500 - 3.0600 1.00 2616 136 0.1784 0.2154 REMARK 3 7 3.0600 - 2.9000 0.99 2580 127 0.1822 0.2117 REMARK 3 8 2.9000 - 2.7800 1.00 2583 134 0.1833 0.2513 REMARK 3 9 2.7800 - 2.6700 0.99 2602 139 0.1931 0.2254 REMARK 3 10 2.6700 - 2.5800 1.00 2571 141 0.1783 0.2486 REMARK 3 11 2.5800 - 2.5000 1.00 2580 124 0.1716 0.2081 REMARK 3 12 2.5000 - 2.4300 1.00 2582 132 0.1824 0.2342 REMARK 3 13 2.4300 - 2.3600 0.97 2501 127 0.1871 0.2405 REMARK 3 14 2.3600 - 2.3100 1.00 2570 140 0.1912 0.2793 REMARK 3 15 2.3100 - 2.2500 0.98 2499 154 0.2010 0.2336 REMARK 3 16 2.2500 - 2.2000 0.96 2420 160 0.2578 0.3038 REMARK 3 17 2.2000 - 2.1600 0.99 2577 137 0.2338 0.2554 REMARK 3 18 2.1600 - 2.1200 0.99 2573 122 0.2354 0.2770 REMARK 3 19 2.1200 - 2.0800 0.99 2546 135 0.2417 0.2762 REMARK 3 20 2.0800 - 2.0500 0.99 2545 150 0.2734 0.3401 REMARK 3 21 2.0500 - 2.0100 0.99 2562 137 0.2796 0.3302 REMARK 3 22 2.0100 - 1.9800 0.98 2474 132 0.2955 0.3530 REMARK 3 23 1.9800 - 1.9500 0.97 2535 113 0.3200 0.3198 REMARK 3 24 1.9500 - 1.9300 0.95 2465 130 0.3488 0.3978 REMARK 3 25 1.9300 - 1.9000 0.90 2309 124 0.4187 0.4054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5718 REMARK 3 ANGLE : 0.905 7798 REMARK 3 CHIRALITY : 0.053 843 REMARK 3 PLANARITY : 0.007 1001 REMARK 3 DIHEDRAL : 17.758 2051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2066 54.4786 -14.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.5123 T22: 0.6215 REMARK 3 T33: 0.4468 T12: -0.0230 REMARK 3 T13: 0.0392 T23: 0.1273 REMARK 3 L TENSOR REMARK 3 L11: 1.0989 L22: 1.0024 REMARK 3 L33: 0.8104 L12: -0.5000 REMARK 3 L13: 0.3213 L23: 0.5242 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.2646 S13: 0.0204 REMARK 3 S21: -0.2546 S22: 0.0808 S23: 0.2027 REMARK 3 S31: -0.0644 S32: -0.3889 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5657 47.6958 2.3554 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.3741 REMARK 3 T33: 0.4047 T12: -0.0339 REMARK 3 T13: 0.0711 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.7951 L22: 1.4021 REMARK 3 L33: 1.5178 L12: -0.2624 REMARK 3 L13: -0.0688 L23: -0.4569 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.0682 S13: 0.1078 REMARK 3 S21: -0.0887 S22: 0.0400 S23: -0.1811 REMARK 3 S31: -0.0398 S32: 0.0590 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3528 62.4849 -15.9742 REMARK 3 T TENSOR REMARK 3 T11: 0.7498 T22: 0.5946 REMARK 3 T33: 0.6206 T12: -0.1390 REMARK 3 T13: 0.1440 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.2886 L22: 0.0879 REMARK 3 L33: 0.3247 L12: 0.0192 REMARK 3 L13: 0.2843 L23: -0.0778 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: 0.0715 S13: 0.3180 REMARK 3 S21: 0.1699 S22: 0.2009 S23: 0.1887 REMARK 3 S31: -0.5489 S32: 0.2341 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2986 7.9013 35.4073 REMARK 3 T TENSOR REMARK 3 T11: 0.5378 T22: 0.5658 REMARK 3 T33: 0.7033 T12: -0.1438 REMARK 3 T13: -0.1590 T23: 0.1946 REMARK 3 L TENSOR REMARK 3 L11: 1.6336 L22: 1.6198 REMARK 3 L33: 0.6809 L12: -0.3670 REMARK 3 L13: 0.1148 L23: 0.2613 REMARK 3 S TENSOR REMARK 3 S11: 0.2135 S12: -0.2676 S13: -0.4851 REMARK 3 S21: 0.2507 S22: -0.1774 S23: -0.6305 REMARK 3 S31: 0.1923 S32: 0.4490 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0798 26.5209 24.9146 REMARK 3 T TENSOR REMARK 3 T11: 0.3023 T22: 0.4002 REMARK 3 T33: 0.3325 T12: -0.0665 REMARK 3 T13: 0.0116 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.4602 L22: 1.8730 REMARK 3 L33: 1.4238 L12: 0.4881 REMARK 3 L13: 0.5373 L23: -0.2963 REMARK 3 S TENSOR REMARK 3 S11: 0.1290 S12: -0.2715 S13: -0.0247 REMARK 3 S21: -0.0132 S22: -0.1164 S23: 0.0449 REMARK 3 S31: 0.0068 S32: -0.1838 S33: -0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 328 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6566 7.2157 39.9721 REMARK 3 T TENSOR REMARK 3 T11: 0.7462 T22: 0.5997 REMARK 3 T33: 0.5487 T12: -0.1632 REMARK 3 T13: 0.0038 T23: 0.0813 REMARK 3 L TENSOR REMARK 3 L11: 0.3588 L22: 0.7369 REMARK 3 L33: 0.3348 L12: -0.1941 REMARK 3 L13: -0.0986 L23: -0.3987 REMARK 3 S TENSOR REMARK 3 S11: -0.1542 S12: -0.3379 S13: -0.0209 REMARK 3 S21: 0.7763 S22: -0.1849 S23: 0.1179 REMARK 3 S31: -0.0147 S32: -0.0717 S33: -0.0029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 3 through 22 or REMARK 3 resid 24 through 64 or resid 67 through REMARK 3 68 or resid 70 through 119 or resid 121 REMARK 3 through 122 or resid 124 through 154 or REMARK 3 resid 156 through 191 or resid 193 REMARK 3 through 198 or resid 200 through 232 or REMARK 3 resid 234 through 239 or resid 241 REMARK 3 through 282 or resid 284 through 289 or REMARK 3 resid 291 through 308 or resid 310 REMARK 3 through 343)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 3 through 22 or REMARK 3 resid 24 through 64 or resid 67 through REMARK 3 68 or resid 70 through 119 or resid 121 REMARK 3 through 122 or resid 124 through 154 or REMARK 3 resid 156 through 191 or resid 193 REMARK 3 through 198 or resid 200 through 232 or REMARK 3 resid 234 through 239 or resid 241 REMARK 3 through 282 or resid 284 through 289 or REMARK 3 resid 291 through 308 or resid 310 REMARK 3 through 343)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-23. REMARK 100 THE DEPOSITION ID IS D_1292130079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999869 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 9.0, 1.6 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.54950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.86450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.54950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.86450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 744 O HOH A 754 1.88 REMARK 500 O HOH B 668 O HOH B 764 1.98 REMARK 500 O HOH B 762 O HOH B 774 1.99 REMARK 500 O HOH A 523 O HOH A 688 2.03 REMARK 500 OE1 GLU B 286 O HOH B 501 2.03 REMARK 500 O HOH A 601 O HOH A 787 2.10 REMARK 500 NH1 ARG B 309 O HOH B 502 2.11 REMARK 500 OD1 ASN A 240 O HOH A 501 2.12 REMARK 500 OE2 GLU A 192 O HOH A 502 2.14 REMARK 500 O HOH B 726 O HOH B 764 2.15 REMARK 500 O HOH B 505 O HOH B 781 2.16 REMARK 500 O HOH A 541 O HOH A 796 2.16 REMARK 500 O HOH A 753 O HOH A 765 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 69 ND1 HIS B 350 3555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 67 115.94 -35.75 REMARK 500 SER A 68 -110.73 -110.58 REMARK 500 SER A 68 -108.54 -110.58 REMARK 500 SER A 70 -168.11 -108.27 REMARK 500 SER A 70 -168.11 -113.21 REMARK 500 SER A 259 22.71 -145.43 REMARK 500 LYS B 66 -135.22 42.43 REMARK 500 SER B 259 20.26 -145.80 REMARK 500 ALA B 333 -170.63 -171.05 REMARK 500 GLU B 344 119.96 175.30 REMARK 500 HIS B 345 -55.20 92.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 795 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 796 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 329 O REMARK 620 2 NAP B 401 O3X 109.1 REMARK 620 3 HOH B 633 O 96.2 95.8 REMARK 620 4 HOH B 723 O 77.1 148.1 114.9 REMARK 620 5 HOH B 730 O 93.9 79.3 169.7 69.0 REMARK 620 N 1 2 3 4 DBREF1 8OV8 A 1 342 UNP A0A8A1QR26_CYCAE DBREF2 8OV8 A A0A8A1QR26 1 342 DBREF1 8OV8 B 1 342 UNP A0A8A1QR26_CYCAE DBREF2 8OV8 B A0A8A1QR26 1 342 SEQADV 8OV8 LEU A 343 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 GLU A 344 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS A 345 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS A 346 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS A 347 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS A 348 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS A 349 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS A 350 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 LEU B 343 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 GLU B 344 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS B 345 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS B 346 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS B 347 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS B 348 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS B 349 UNP A0A8A1QR2 EXPRESSION TAG SEQADV 8OV8 HIS B 350 UNP A0A8A1QR2 EXPRESSION TAG SEQRES 1 A 350 MET ALA PRO VAL THR ASN GLY ARG ILE ILE PHE ASN SER SEQRES 2 A 350 ILE PRO THR GLY PHE PRO VAL PRO GLY GLU THR THR ILE SEQRES 3 A 350 TYR ASP THR THR GLU THR ILE ASP LEU ASP THR ALA PRO SEQRES 4 A 350 LEU ASP GLY GLY PHE LEU LEU LYS THR LEU GLU LEU SER SEQRES 5 A 350 VAL ASP PRO TYR MET ARG GLY GLY MET ARG ALA PRO GLU SEQRES 6 A 350 LYS LYS SER TYR SER ALA PRO PHE THR LEU GLY GLN PRO SEQRES 7 A 350 LEU ARG GLY TYR GLY VAL GLY VAL VAL LEU ARG SER GLU SEQRES 8 A 350 ASN PRO GLN VAL LYS ALA GLY ASP HIS LEU TYR GLY PHE SEQRES 9 A 350 PHE GLU HIS THR HIS TYR SER ILE ARG LYS ASP LEU THR SEQRES 10 A 350 GLY LEU GLN ALA ILE GLU ASN ALA TYR ASN LEU PRO TRP SEQRES 11 A 350 SER VAL PHE ILE GLY VAL ILE GLY MET PRO GLY LYS THR SEQRES 12 A 350 ALA TYR MET ALA TRP LYS GLU TYR ALA HIS PRO LYS GLN SEQRES 13 A 350 GLY GLU THR VAL PHE VAL SER THR GLY ALA GLY PRO VAL SEQRES 14 A 350 GLY SER PHE VAL ILE GLN LEU ALA LYS ALA ASP GLY LEU SEQRES 15 A 350 LYS VAL ILE ALA SER ALA GLY SER GLU GLU LYS VAL GLN SEQRES 16 A 350 PHE MET LYS GLU VAL GLY ALA ASP VAL ALA PHE ASN TYR SEQRES 17 A 350 LYS THR THR ASN THR ALA GLU VAL LEU GLU LYS GLU GLY SEQRES 18 A 350 PRO ILE ASP ILE TYR TRP ASP ASN VAL GLY GLY GLU THR SEQRES 19 A 350 LEU GLU ALA ALA LEU ASN ALA ALA ASN VAL ASN ALA ARG SEQRES 20 A 350 PHE ILE GLU CYS GLY MET ILE SER GLY TYR ASN SER GLY SEQRES 21 A 350 GLY ALA PRO VAL ARG ASN ILE PHE HIS VAL ILE GLY LYS SEQRES 22 A 350 SER ILE THR MET THR GLY PHE ILE VAL SER ARG ILE GLU SEQRES 23 A 350 PRO LYS TYR SER ALA GLU PHE TYR LYS GLU VAL PRO ALA SEQRES 24 A 350 LYS VAL ALA SER GLY GLU LEU LYS TYR ARG GLU HIS VAL SEQRES 25 A 350 TYR ASN GLY LEU GLU LYS LEU GLY ASP VAL ILE LEU ALA SEQRES 26 A 350 VAL GLN LYS GLY GLU ASN LYS ALA LYS ALA VAL VAL HIS SEQRES 27 A 350 VAL ALA ASP ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 350 MET ALA PRO VAL THR ASN GLY ARG ILE ILE PHE ASN SER SEQRES 2 B 350 ILE PRO THR GLY PHE PRO VAL PRO GLY GLU THR THR ILE SEQRES 3 B 350 TYR ASP THR THR GLU THR ILE ASP LEU ASP THR ALA PRO SEQRES 4 B 350 LEU ASP GLY GLY PHE LEU LEU LYS THR LEU GLU LEU SER SEQRES 5 B 350 VAL ASP PRO TYR MET ARG GLY GLY MET ARG ALA PRO GLU SEQRES 6 B 350 LYS LYS SER TYR SER ALA PRO PHE THR LEU GLY GLN PRO SEQRES 7 B 350 LEU ARG GLY TYR GLY VAL GLY VAL VAL LEU ARG SER GLU SEQRES 8 B 350 ASN PRO GLN VAL LYS ALA GLY ASP HIS LEU TYR GLY PHE SEQRES 9 B 350 PHE GLU HIS THR HIS TYR SER ILE ARG LYS ASP LEU THR SEQRES 10 B 350 GLY LEU GLN ALA ILE GLU ASN ALA TYR ASN LEU PRO TRP SEQRES 11 B 350 SER VAL PHE ILE GLY VAL ILE GLY MET PRO GLY LYS THR SEQRES 12 B 350 ALA TYR MET ALA TRP LYS GLU TYR ALA HIS PRO LYS GLN SEQRES 13 B 350 GLY GLU THR VAL PHE VAL SER THR GLY ALA GLY PRO VAL SEQRES 14 B 350 GLY SER PHE VAL ILE GLN LEU ALA LYS ALA ASP GLY LEU SEQRES 15 B 350 LYS VAL ILE ALA SER ALA GLY SER GLU GLU LYS VAL GLN SEQRES 16 B 350 PHE MET LYS GLU VAL GLY ALA ASP VAL ALA PHE ASN TYR SEQRES 17 B 350 LYS THR THR ASN THR ALA GLU VAL LEU GLU LYS GLU GLY SEQRES 18 B 350 PRO ILE ASP ILE TYR TRP ASP ASN VAL GLY GLY GLU THR SEQRES 19 B 350 LEU GLU ALA ALA LEU ASN ALA ALA ASN VAL ASN ALA ARG SEQRES 20 B 350 PHE ILE GLU CYS GLY MET ILE SER GLY TYR ASN SER GLY SEQRES 21 B 350 GLY ALA PRO VAL ARG ASN ILE PHE HIS VAL ILE GLY LYS SEQRES 22 B 350 SER ILE THR MET THR GLY PHE ILE VAL SER ARG ILE GLU SEQRES 23 B 350 PRO LYS TYR SER ALA GLU PHE TYR LYS GLU VAL PRO ALA SEQRES 24 B 350 LYS VAL ALA SER GLY GLU LEU LYS TYR ARG GLU HIS VAL SEQRES 25 B 350 TYR ASN GLY LEU GLU LYS LEU GLY ASP VAL ILE LEU ALA SEQRES 26 B 350 VAL GLN LYS GLY GLU ASN LYS ALA LYS ALA VAL VAL HIS SEQRES 27 B 350 VAL ALA ASP ASP LEU GLU HIS HIS HIS HIS HIS HIS HET NAP A 401 73 HET SO4 A 402 5 HET SO4 A 403 5 HET NAP B 401 73 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET NA B 405 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 NA NA 1+ FORMUL 11 HOH *601(H2 O) HELIX 1 AA1 ASP A 54 MET A 61 5 8 HELIX 2 AA2 PRO A 129 GLY A 135 5 7 HELIX 3 AA3 GLY A 138 ALA A 152 1 15 HELIX 4 AA4 GLY A 167 ASP A 180 1 14 HELIX 5 AA5 SER A 190 VAL A 200 1 11 HELIX 6 AA6 ASN A 212 GLY A 221 1 10 HELIX 7 AA7 GLY A 231 ALA A 241 1 11 HELIX 8 AA8 MET A 253 TYR A 257 5 5 HELIX 9 AA9 PHE A 268 LYS A 273 1 6 HELIX 10 AB1 ILE A 281 SER A 303 1 23 HELIX 11 AB2 LYS A 318 LYS A 328 1 11 HELIX 12 AB3 ASP B 54 MET B 61 5 8 HELIX 13 AB4 PRO B 129 GLY B 135 5 7 HELIX 14 AB5 GLY B 138 ALA B 152 1 15 HELIX 15 AB6 GLY B 167 ASP B 180 1 14 HELIX 16 AB7 SER B 190 VAL B 200 1 11 HELIX 17 AB8 ASN B 212 GLY B 221 1 10 HELIX 18 AB9 GLY B 231 ALA B 241 1 11 HELIX 19 AC1 MET B 253 TYR B 257 5 5 HELIX 20 AC2 PHE B 268 LYS B 273 1 6 HELIX 21 AC3 ILE B 281 GLY B 304 1 24 HELIX 22 AC4 LYS B 318 LYS B 328 1 11 SHEET 1 AA1 2 VAL A 4 THR A 5 0 SHEET 2 AA1 2 THR A 32 ILE A 33 -1 O ILE A 33 N VAL A 4 SHEET 1 AA2 2 ARG A 8 PHE A 11 0 SHEET 2 AA2 2 THR A 25 ASP A 28 -1 O ASP A 28 N ARG A 8 SHEET 1 AA3 5 TYR A 110 ARG A 113 0 SHEET 2 AA3 5 PHE A 44 SER A 52 -1 N LEU A 46 O SER A 111 SHEET 3 AA3 5 ARG A 80 SER A 90 -1 O VAL A 86 N LYS A 47 SHEET 4 AA3 5 HIS A 100 GLU A 106 -1 O PHE A 105 N GLY A 81 SHEET 5 AA3 5 LEU A 119 ALA A 121 -1 O GLN A 120 N TYR A 102 SHEET 1 AA4 4 TYR A 110 ARG A 113 0 SHEET 2 AA4 4 PHE A 44 SER A 52 -1 N LEU A 46 O SER A 111 SHEET 3 AA4 4 LYS A 334 HIS A 338 -1 O VAL A 337 N LEU A 51 SHEET 4 AA4 4 GLU A 310 ASN A 314 1 N TYR A 313 O VAL A 336 SHEET 1 AA512 VAL A 204 ASN A 207 0 SHEET 2 AA512 LYS A 183 ALA A 188 1 N ALA A 186 O VAL A 204 SHEET 3 AA512 THR A 159 SER A 163 1 N VAL A 160 O ILE A 185 SHEET 4 AA512 ILE A 223 ASP A 228 1 O TRP A 227 N PHE A 161 SHEET 5 AA512 ALA A 242 GLU A 250 1 O ASN A 243 N ILE A 223 SHEET 6 AA512 THR A 276 GLY A 279 1 O THR A 276 N PHE A 248 SHEET 7 AA512 THR B 276 GLY B 279 -1 O MET B 277 N MET A 277 SHEET 8 AA512 ALA B 242 GLU B 250 1 N PHE B 248 O THR B 276 SHEET 9 AA512 ILE B 223 ASP B 228 1 N ASP B 228 O ILE B 249 SHEET 10 AA512 THR B 159 VAL B 162 1 N PHE B 161 O TRP B 227 SHEET 11 AA512 LYS B 183 ALA B 188 1 O ILE B 185 N VAL B 162 SHEET 12 AA512 VAL B 204 ASN B 207 1 O VAL B 204 N ALA B 186 SHEET 1 AA6 2 VAL B 4 THR B 5 0 SHEET 2 AA6 2 THR B 32 ILE B 33 -1 O ILE B 33 N VAL B 4 SHEET 1 AA7 2 ARG B 8 PHE B 11 0 SHEET 2 AA7 2 THR B 25 ASP B 28 -1 O ILE B 26 N ILE B 10 SHEET 1 AA8 5 TYR B 110 ARG B 113 0 SHEET 2 AA8 5 PHE B 44 SER B 52 -1 N LEU B 46 O SER B 111 SHEET 3 AA8 5 ARG B 80 SER B 90 -1 O VAL B 86 N LYS B 47 SHEET 4 AA8 5 HIS B 100 GLU B 106 -1 O PHE B 105 N GLY B 81 SHEET 5 AA8 5 LEU B 119 ALA B 121 -1 O GLN B 120 N TYR B 102 SHEET 1 AA9 4 TYR B 110 ARG B 113 0 SHEET 2 AA9 4 PHE B 44 SER B 52 -1 N LEU B 46 O SER B 111 SHEET 3 AA9 4 LYS B 334 HIS B 338 -1 O VAL B 337 N LEU B 51 SHEET 4 AA9 4 GLU B 310 ASN B 314 1 N HIS B 311 O LYS B 334 LINK O GLY B 329 NA NA B 405 1555 1555 2.44 LINK O3X NAP B 401 NA NA B 405 1555 1555 2.89 LINK NA NA B 405 O HOH B 633 1555 1555 2.27 LINK NA NA B 405 O HOH B 723 1555 1555 2.64 LINK NA NA B 405 O HOH B 730 1555 1555 2.10 CISPEP 1 GLY A 221 PRO A 222 0 -0.23 CISPEP 2 GLY B 221 PRO B 222 0 0.63 CRYST1 83.420 99.729 103.099 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009699 0.00000 MTRIX1 1 -0.991721 0.103154 0.076473 15.92811 1 MTRIX2 1 0.076508 -0.003625 0.997062 21.33772 1 MTRIX3 1 0.103128 0.994659 -0.004297 -22.59671 1