HEADER HYDROLASE 27-APR-23 8OWC TITLE CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME CO-CRYSTALLIZED WITH 10 MM TITLE 2 TBXO4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS HEWL, CRYSTALLOPHORE, NUCLEATING AGENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ALSALMAN,E.GIRARD REVDAT 1 17-JUL-24 8OWC 0 JRNL AUTH A.ROUX,Z.ALSALMAN,T.JIANG,J.C.MULATIER,D.PITRAT,E.DUMONT, JRNL AUTH 2 F.RIOBE,N.GILLET,E.GIRARD,O.MAURY JRNL TITL INFLUENCE OF CHEMICAL MODIFICATIONS OF THE CRYSTALLOPHORE ON JRNL TITL 2 PROTEIN NUCLEATING PROPERTIES AND SUPRAMOLECULAR JRNL TITL 3 INTERACTIONS NETWORK. JRNL REF CHEMISTRY V. 30 00900 2024 JRNL REFN ISSN 0947-6539 JRNL PMID 38738452 JRNL DOI 10.1002/CHEM.202400900 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7500 - 2.9100 0.99 2597 137 0.1646 0.1960 REMARK 3 2 2.9100 - 2.3100 1.00 2491 131 0.1848 0.2019 REMARK 3 3 2.3100 - 2.0200 1.00 2448 128 0.1776 0.2228 REMARK 3 4 2.0200 - 1.8300 1.00 2424 129 0.1934 0.2408 REMARK 3 5 1.8300 - 1.7000 0.99 2404 126 0.2052 0.2960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1072 REMARK 3 ANGLE : 0.694 1450 REMARK 3 CHIRALITY : 0.043 150 REMARK 3 PLANARITY : 0.004 189 REMARK 3 DIHEDRAL : 12.755 377 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3415 16.1280 9.7456 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.4111 REMARK 3 T33: 0.1955 T12: 0.0053 REMARK 3 T13: -0.0991 T23: -0.1508 REMARK 3 L TENSOR REMARK 3 L11: 0.4103 L22: 0.6594 REMARK 3 L33: 0.4447 L12: -0.5018 REMARK 3 L13: -0.1850 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.1579 S12: 0.3594 S13: -0.2038 REMARK 3 S21: -0.1106 S22: -0.1615 S23: 0.2282 REMARK 3 S31: 0.2496 S32: -0.1263 S33: -0.0541 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7431 15.1327 28.2702 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.2391 REMARK 3 T33: 0.2241 T12: 0.0564 REMARK 3 T13: -0.0017 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1276 L22: 0.0517 REMARK 3 L33: 0.1145 L12: -0.0251 REMARK 3 L13: -0.1154 L23: 0.0375 REMARK 3 S TENSOR REMARK 3 S11: -0.1994 S12: -0.1084 S13: -0.1623 REMARK 3 S21: 0.1328 S22: 0.0074 S23: 0.0325 REMARK 3 S31: -0.0038 S32: -0.2468 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5345 8.8383 19.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2376 REMARK 3 T33: 0.3216 T12: 0.0048 REMARK 3 T13: 0.0131 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.0202 REMARK 3 L33: 0.0132 L12: 0.0100 REMARK 3 L13: -0.0078 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: -0.2684 S12: -0.0160 S13: -0.1273 REMARK 3 S21: -0.0452 S22: -0.1033 S23: 0.0969 REMARK 3 S31: 0.0153 S32: -0.0842 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7507 17.1099 25.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.2624 REMARK 3 T33: 0.3012 T12: 0.0099 REMARK 3 T13: 0.0174 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.0098 REMARK 3 L33: 0.0342 L12: 0.0013 REMARK 3 L13: 0.0010 L23: -0.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.1035 S13: -0.3572 REMARK 3 S21: 0.2361 S22: 0.0486 S23: 0.0710 REMARK 3 S31: 0.0485 S32: -0.0531 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5838 29.2729 22.2662 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.2334 REMARK 3 T33: 0.2182 T12: 0.0152 REMARK 3 T13: -0.0184 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: 0.0358 REMARK 3 L33: 0.0240 L12: 0.0040 REMARK 3 L13: -0.0076 L23: 0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.1521 S12: -0.0203 S13: 0.0830 REMARK 3 S21: 0.0228 S22: 0.0300 S23: -0.2052 REMARK 3 S31: -0.0366 S32: 0.3948 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8534 28.2362 8.3993 REMARK 3 T TENSOR REMARK 3 T11: 0.2244 T22: 0.3875 REMARK 3 T33: 0.2832 T12: 0.0699 REMARK 3 T13: -0.0719 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.0867 L22: 0.4114 REMARK 3 L33: 0.9159 L12: -0.0167 REMARK 3 L13: 0.2091 L23: -0.4494 REMARK 3 S TENSOR REMARK 3 S11: 0.1890 S12: 0.2978 S13: 0.2580 REMARK 3 S21: 0.0039 S22: -0.0034 S23: 0.2834 REMARK 3 S31: -0.1045 S32: -0.1316 S33: 0.3305 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1292130165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.648 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 24.00 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 23.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 650 MM SODIUM CHLORIDE, 100MM SODIUM REMARK 280 ACETATE PH=4.6. DROPS WERE SET BY MIXING ONE VOLUME OF PROTEIN REMARK 280 SOLUTION AT 20MG/ML WITH ONE VOLUME OF 10MM TBXO4 AND WITH ONE REMARK 280 VOLUME OF THE WELL SOLUTION., PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.74550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.73700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.73700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.11825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.73700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.73700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.37275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.73700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.73700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.11825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.73700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.73700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.37275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.74550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 334 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 419 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ARG A -16 REMARK 465 SER A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 ILE A -12 REMARK 465 LEU A -11 REMARK 465 VAL A -10 REMARK 465 LEU A -9 REMARK 465 CYS A -8 REMARK 465 PHE A -7 REMARK 465 LEU A -6 REMARK 465 PRO A -5 REMARK 465 LEU A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 112 O HOH A 302 1.49 REMARK 500 CL CL A 209 O HOH A 418 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 332 O HOH A 421 3554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 62 -30.04 -130.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 210 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 87.9 REMARK 620 3 SER A 72 OG 85.7 166.9 REMARK 620 4 ARG A 73 O 94.2 87.8 104.1 REMARK 620 5 HOH A 369 O 99.9 88.4 81.4 165.2 REMARK 620 6 HOH A 394 O 169.9 102.1 84.8 84.9 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD1 REMARK 620 2 ASP A 101 OD2 51.2 REMARK 620 3 7MT A 202 N17 115.0 108.4 REMARK 620 4 7MT A 202 O28 64.1 67.7 52.4 REMARK 620 5 7MT A 202 N06 116.6 65.5 79.0 91.0 REMARK 620 6 7MT A 202 N02 175.8 124.9 66.7 116.6 59.6 REMARK 620 7 7MT A 202 N09 112.7 81.6 124.8 142.4 55.6 64.0 REMARK 620 8 7MT A 202 N23 87.6 107.7 143.8 147.5 117.2 92.9 61.7 REMARK 620 9 7MT A 202 O25 96.9 148.0 85.3 102.7 146.5 87.0 114.7 63.2 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 8OWC A -17 129 UNP P00698 LYSC_CHICK 1 147 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU HET TB A 201 1 HET 7MT A 202 52 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET NA A 210 1 HETNAM TB TERBIUM(III) ION HETNAM 7MT TB-XO4 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 TB TB 3+ FORMUL 3 7MT C20 H23 N5 O4 TB 5+ FORMUL 4 CL 7(CL 1-) FORMUL 11 NA NA 1+ FORMUL 12 HOH *137(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.06 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.04 LINK O SER A 60 NA NA A 210 1555 1555 2.30 LINK O CYS A 64 NA NA A 210 1555 1555 2.52 LINK OG SER A 72 NA NA A 210 1555 1555 2.49 LINK O ARG A 73 NA NA A 210 1555 1555 2.54 LINK OD1 ASP A 101 TB TB A 201 1555 1555 2.75 LINK OD2 ASP A 101 TB TB A 201 1555 1555 2.21 LINK TB TB A 201 N17 7MT A 202 1555 1555 2.72 LINK TB TB A 201 O28 7MT A 202 1555 1555 3.47 LINK TB TB A 201 N06 7MT A 202 1555 1555 3.07 LINK TB TB A 201 N02 7MT A 202 1555 1555 2.55 LINK TB TB A 201 N09 7MT A 202 1555 1555 2.93 LINK TB TB A 201 N23 7MT A 202 1555 1555 2.50 LINK TB TB A 201 O25 7MT A 202 1555 1555 2.91 LINK NA NA A 210 O HOH A 369 1555 1555 2.44 LINK NA NA A 210 O HOH A 394 1555 1555 2.39 CRYST1 77.474 77.474 37.491 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012908 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026673 0.00000