HEADER TRANSFERASE 02-MAY-23 8OXE TITLE INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 1 FROM SOLANUM TUBEROSUM TITLE 2 (STITPK1) IN COMPLEX WITH ADP/MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL-TETRAKISPHOSPHATE 1-KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 GENE: IPKA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INOSITOL KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FABA-RODRIGUEZ,A.W.H.LI,C.A.BREARLEY,A.M.HEMMINGS REVDAT 1 27-MAR-24 8OXE 0 JRNL AUTH H.L.WHITFIELD,R.F.RODRIGUEZ,M.L.SHIPTON,A.W.H.LI,A.M.RILEY, JRNL AUTH 2 B.V.L.POTTER,A.M.HEMMINGS,C.A.BREARLEY JRNL TITL CRYSTAL STRUCTURE AND ENZYMOLOGY OF SOLANUM TUBEROSUM JRNL TITL 2 INOSITOL TRIS/TETRAKISPHOSPHATE KINASE 1 ( ST ITPK1). JRNL REF BIOCHEMISTRY V. 63 42 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 38146842 JRNL DOI 10.1021/ACS.BIOCHEM.3C00404 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.5900 - 4.1100 1.00 2801 155 0.1697 0.2034 REMARK 3 2 4.1100 - 3.2600 1.00 2701 119 0.1736 0.2460 REMARK 3 3 3.2600 - 2.8500 1.00 2648 147 0.2002 0.2462 REMARK 3 4 2.8500 - 2.5900 1.00 2642 138 0.2168 0.2735 REMARK 3 5 2.5900 - 2.4000 0.99 2614 132 0.2186 0.2904 REMARK 3 6 2.4000 - 2.2600 0.99 2619 119 0.2260 0.2722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2524 REMARK 3 ANGLE : 1.233 3414 REMARK 3 CHIRALITY : 0.069 374 REMARK 3 PLANARITY : 0.013 436 REMARK 3 DIHEDRAL : 10.874 340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2857 -22.2052 36.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.1655 REMARK 3 T33: 0.2584 T12: -0.0060 REMARK 3 T13: 0.0027 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.5124 L22: 2.4627 REMARK 3 L33: 4.3710 L12: 0.5131 REMARK 3 L13: -1.0894 L23: -1.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.0569 S13: 0.0786 REMARK 3 S21: 0.1978 S22: 0.1292 S23: 0.3713 REMARK 3 S31: 0.0845 S32: -0.4179 S33: -0.0168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3259 -22.0903 14.0614 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.2141 REMARK 3 T33: 0.2291 T12: -0.0076 REMARK 3 T13: -0.0130 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.4126 L22: 4.7516 REMARK 3 L33: 3.6333 L12: 0.2169 REMARK 3 L13: -0.9777 L23: 1.6730 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: 0.2641 S13: -0.2660 REMARK 3 S21: -0.5131 S22: 0.0522 S23: -0.3390 REMARK 3 S31: 0.2584 S32: 0.0059 S33: 0.0299 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5734 -13.2064 18.0906 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.4205 REMARK 3 T33: 0.4284 T12: -0.0273 REMARK 3 T13: 0.0657 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.2376 L22: 4.1171 REMARK 3 L33: 0.8558 L12: -1.1226 REMARK 3 L13: 0.6001 L23: 0.8762 REMARK 3 S TENSOR REMARK 3 S11: -0.1340 S12: -0.0216 S13: -0.1759 REMARK 3 S21: -0.0615 S22: 0.1256 S23: -0.5286 REMARK 3 S31: 0.1026 S32: 0.3405 S33: -0.0945 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2758 -10.7425 29.9545 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1187 REMARK 3 T33: 0.2339 T12: -0.0102 REMARK 3 T13: -0.0414 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.6236 L22: 4.5608 REMARK 3 L33: 5.0554 L12: -0.1014 REMARK 3 L13: -0.8398 L23: -1.0385 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0137 S13: 0.1605 REMARK 3 S21: 0.2789 S22: 0.0902 S23: 0.2820 REMARK 3 S31: -0.2250 S32: -0.3772 S33: -0.0511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CARELESS REMARK 200 DATA SCALING SOFTWARE : CARELESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 519292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 75.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.1 REMARK 280 M MES PH 6.0, 20% (W/V) PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.38500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.38500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 MET A 7 REMARK 465 ASP A 211 REMARK 465 GLY A 212 REMARK 465 LEU A 213 REMARK 465 GLY A 214 REMARK 465 ASN A 227 REMARK 465 LEU A 228 REMARK 465 ASN A 229 REMARK 465 ASN A 230 REMARK 465 PHE A 231 REMARK 465 GLU A 232 REMARK 465 LYS A 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 548 O HOH A 562 2.02 REMARK 500 OE1 GLN A 70 O HOH A 501 2.10 REMARK 500 O HOH A 618 O HOH A 622 2.12 REMARK 500 OD1 ASP A 236 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 142 C - N - CD ANGL. DEV. = -24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 9 79.00 77.99 REMARK 500 LYS A 61 82.00 -153.82 REMARK 500 CYS A 110 72.29 -158.52 REMARK 500 PHE A 141 -178.98 -66.56 REMARK 500 PRO A 142 83.66 40.82 REMARK 500 SER A 223 -129.75 -150.10 REMARK 500 ASP A 235 -171.35 -57.70 REMARK 500 ASP A 236 -43.41 71.10 REMARK 500 PHE A 293 70.69 41.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 141 PRO A 142 -116.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 44 OD1 0.0 REMARK 620 3 ASP A 46 OD2 93.9 93.9 REMARK 620 4 ASP A 46 OD2 93.9 93.9 0.0 REMARK 620 5 HOH A 608 O 84.4 84.4 176.1 176.1 REMARK 620 6 HOH A 608 O 92.4 92.4 84.4 84.4 99.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 274 OD2 REMARK 620 2 ASP A 289 OD2 89.1 REMARK 620 3 ADP A 401 O3B 172.6 86.7 REMARK 620 4 ADP A 401 O2A 107.6 93.3 78.8 REMARK 620 5 HOH A 502 O 91.0 95.3 83.4 159.7 REMARK 620 6 HOH A 522 O 92.5 177.4 91.9 84.3 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 289 OD1 REMARK 620 2 ASP A 289 OD2 52.0 REMARK 620 3 ASN A 291 OD1 88.5 90.5 REMARK 620 4 ADP A 401 O2B 94.3 79.7 164.9 REMARK 620 5 HOH A 531 O 127.0 75.9 82.9 83.6 REMARK 620 6 HOH A 576 O 71.7 121.1 105.4 89.5 160.3 REMARK 620 7 HOH A 577 O 147.0 152.4 74.4 109.6 79.4 85.6 REMARK 620 N 1 2 3 4 5 6 DBREF 8OXE A 1 320 UNP A4H2J0 A4H2J0_SOLTU 1 320 SEQADV 8OXE GLY A -1 UNP A4H2J0 EXPRESSION TAG SEQADV 8OXE PRO A 0 UNP A4H2J0 EXPRESSION TAG SEQADV 8OXE TYR A 296 UNP A4H2J0 PHE 296 CONFLICT SEQRES 1 A 322 GLY PRO MET LYS MET ALA GLU PRO MET ARG ARG TYR SER SEQRES 2 A 322 VAL GLY TYR ALA LEU ALA PRO LYS LYS GLN ALA SER PHE SEQRES 3 A 322 ILE GLN VAL SER LEU VAL ASN LEU ALA LYS GLU ARG GLY SEQRES 4 A 322 ILE ASP LEU ILE LYS ILE ASP THR ASP LYS PRO LEU ILE SEQRES 5 A 322 ASP GLN GLY PRO PHE ASP CYS VAL LEU HIS LYS MET ASP SEQRES 6 A 322 GLY ASP ASP TRP LYS ARG GLN LEU LYS GLU TYR GLY SER SEQRES 7 A 322 GLU PHE PRO GLN ALA LEU ILE ILE ASP SER PRO GLU ALA SEQRES 8 A 322 ILE GLU ARG LEU HIS ASN ARG ILE SER MET LEU GLN ALA SEQRES 9 A 322 VAL GLY GLU VAL GLU ILE ASP CYS GLU ASN ALA SER PHE SEQRES 10 A 322 GLY ILE PRO LYS GLN THR VAL ILE TYR ASP ALA LYS MET SEQRES 11 A 322 VAL SER ALA ILE ASN LEU GLU ASN GLU GLY LEU GLU PHE SEQRES 12 A 322 PRO VAL ILE ALA LYS PRO LEU VAL ALA ASP GLY SER ALA SEQRES 13 A 322 LYS SER HIS LYS MET LEU LEU VAL PHE ASN LYS ASP GLY SEQRES 14 A 322 LEU ARG LYS LEU LYS PRO PRO ILE VAL LEU GLN GLU PHE SEQRES 15 A 322 VAL ASN HIS GLY ALA VAL ILE PHE LYS VAL TYR VAL VAL SEQRES 16 A 322 GLY ASP TYR VAL LYS CYS VAL LYS ARG LYS SER LEU PRO SEQRES 17 A 322 ASP VAL LYS GLU ASP GLY LEU GLY ARG LEU GLU SER TYR SEQRES 18 A 322 LEU PRO PHE SER GLN VAL SER ASN LEU ASN ASN PHE GLU SEQRES 19 A 322 LYS ASN ASP ASP LYS TYR TYR LYS LEU MET ASN LEU GLU SEQRES 20 A 322 ASN ALA GLU TYR PRO PRO LEU SER PHE LEU THR ASN ILE SEQRES 21 A 322 ALA ARG GLY LEU ARG ARG VAL THR LYS LEU HIS LEU PHE SEQRES 22 A 322 ASN PHE ASP VAL ILE ARG ASP ASP ARG VAL GLY ASN ARG SEQRES 23 A 322 TYR LEU ILE ILE ASP ILE ASN TYR PHE PRO GLY TYR ALA SEQRES 24 A 322 LYS MET PRO ASN TYR GLU ARG VAL LEU THR ASP PHE PHE SEQRES 25 A 322 TRP ASP VAL LEU ASN GLN ASN ASP LYS SER HET ADP A 401 27 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *124(H2 O) HELIX 1 AA1 ALA A 17 ILE A 25 1 9 HELIX 2 AA2 GLN A 26 GLY A 37 1 12 HELIX 3 AA3 PRO A 48 GLN A 52 5 5 HELIX 4 AA4 GLY A 64 PHE A 78 1 15 HELIX 5 AA5 SER A 86 ARG A 92 1 7 HELIX 6 AA6 ASN A 95 LEU A 100 1 6 HELIX 7 AA7 GLN A 101 VAL A 106 5 6 HELIX 8 AA8 ASP A 125 ALA A 131 1 7 HELIX 9 AA9 LEU A 134 GLY A 138 5 5 HELIX 10 AB1 ALA A 154 LYS A 158 5 5 HELIX 11 AB2 GLY A 167 LEU A 171 5 5 HELIX 12 AB3 PRO A 251 LYS A 267 1 17 HELIX 13 AB4 ASN A 301 LYS A 319 1 19 SHEET 1 AA1 4 ILE A 38 LYS A 42 0 SHEET 2 AA1 4 TYR A 10 LEU A 16 1 N VAL A 12 O ASP A 39 SHEET 3 AA1 4 CYS A 57 LYS A 61 1 O LEU A 59 N GLY A 13 SHEET 4 AA1 4 LEU A 82 ILE A 84 1 O ILE A 84 N VAL A 58 SHEET 1 AA2 5 SER A 114 GLY A 116 0 SHEET 2 AA2 5 ARG A 284 TYR A 292 1 O ILE A 287 N GLY A 116 SHEET 3 AA2 5 LEU A 270 ASP A 278 -1 N ASP A 278 O ARG A 284 SHEET 4 AA2 5 VAL A 186 VAL A 193 -1 N VAL A 190 O PHE A 273 SHEET 5 AA2 5 TYR A 196 LYS A 203 -1 O LYS A 198 N TYR A 191 SHEET 1 AA3 5 GLN A 120 ILE A 123 0 SHEET 2 AA3 5 ILE A 175 GLU A 179 -1 O LEU A 177 N THR A 121 SHEET 3 AA3 5 VAL A 143 PRO A 147 -1 N ILE A 144 O GLN A 178 SHEET 4 AA3 5 MET A 159 VAL A 162 -1 O LEU A 160 N ALA A 145 SHEET 5 AA3 5 TYR A 219 PHE A 222 -1 O LEU A 220 N LEU A 161 LINK OD1 ASP A 44 MG MG A 402 1555 1555 2.12 LINK OD1 ASP A 44 MG MG A 402 1555 6445 2.12 LINK OD2 ASP A 46 MG MG A 402 1555 1555 2.21 LINK OD2 ASP A 46 MG MG A 402 1555 6445 2.21 LINK OD2 ASP A 274 MG MG A 403 1555 1555 2.23 LINK OD2 ASP A 289 MG MG A 403 1555 1555 2.23 LINK OD1 ASP A 289 MG MG A 404 1555 1555 2.44 LINK OD2 ASP A 289 MG MG A 404 1555 1555 2.63 LINK OD1 ASN A 291 MG MG A 404 1555 1555 2.19 LINK O3B ADP A 401 MG MG A 403 1555 1555 2.21 LINK O2A ADP A 401 MG MG A 403 1555 1555 2.13 LINK O2B ADP A 401 MG MG A 404 1555 1555 2.13 LINK MG MG A 402 O HOH A 608 1555 1555 2.66 LINK MG MG A 402 O HOH A 608 1555 6445 2.66 LINK MG MG A 403 O HOH A 502 1555 3556 2.24 LINK MG MG A 403 O HOH A 522 1555 1555 2.26 LINK MG MG A 404 O HOH A 531 1555 1555 1.86 LINK MG MG A 404 O HOH A 576 1555 1555 2.56 LINK MG MG A 404 O HOH A 577 1555 1555 2.63 CISPEP 1 GLY A 53 PRO A 54 0 -12.79 CISPEP 2 ILE A 84 ASP A 85 0 -3.90 CISPEP 3 PRO A 173 PRO A 174 0 5.03 CRYST1 89.610 140.770 55.560 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017999 0.00000