HEADER UNKNOWN FUNCTION 02-MAY-23 8OXK TITLE CRYSTAL STRUCTURE OF POWDERY MILDEWS BLUMERIA GRAMINIS F. SP. HORDEI TITLE 2 AVRA10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSEP0141 PUTATIVE EFFECTOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLUMERIA HORDEI; SOURCE 3 ORGANISM_TAXID: 2867405; SOURCE 4 GENE: BGHDH14_BGH03730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS EFFECTOR, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.CAO,J.M.GEBAUER,U.BAUMANN,J.J.CHAI REVDAT 1 16-AUG-23 8OXK 0 JRNL AUTH Y.CAO,F.KUMMEL,E.LOGEMANN,J.M.GEBAUER,A.W.LAWSON,D.YU, JRNL AUTH 2 M.UTHOFF,B.KELLER,J.JIRSCHITZKA,U.BAUMANN,K.TSUDA,J.CHAI, JRNL AUTH 3 P.SCHULZE-LEFERT JRNL TITL STRUCTURAL POLYMORPHISMS WITHIN A COMMON POWDERY MILDEW JRNL TITL 2 EFFECTOR SCAFFOLD AS A DRIVER OF COEVOLUTION WITH CEREAL JRNL TITL 3 IMMUNE RECEPTORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 04120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37523523 JRNL DOI 10.1073/PNAS.2307604120 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 21484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2700 - 3.1400 0.97 1746 151 0.1669 0.1705 REMARK 3 2 3.1300 - 2.4900 0.99 1697 147 0.1740 0.1830 REMARK 3 3 2.4900 - 2.1700 0.98 1672 144 0.1588 0.2053 REMARK 3 4 2.1700 - 1.9800 0.96 1651 143 0.1516 0.1858 REMARK 3 5 1.9800 - 1.8300 0.97 1653 143 0.1652 0.1610 REMARK 3 6 1.8300 - 1.7300 0.97 1649 143 0.1724 0.2157 REMARK 3 7 1.7300 - 1.6400 0.97 1649 143 0.1702 0.1891 REMARK 3 8 1.6400 - 1.5700 0.96 1638 141 0.1672 0.2199 REMARK 3 9 1.5700 - 1.5100 0.95 1588 139 0.1692 0.1981 REMARK 3 10 1.5100 - 1.4600 0.95 1610 139 0.1706 0.1975 REMARK 3 11 1.4600 - 1.4100 0.96 1606 139 0.1970 0.2838 REMARK 3 12 1.4100 - 1.3700 0.95 1614 139 0.2264 0.2351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.121 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 795 REMARK 3 ANGLE : 1.640 1080 REMARK 3 CHIRALITY : 0.126 104 REMARK 3 PLANARITY : 0.017 145 REMARK 3 DIHEDRAL : 5.955 104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 43.7260 29.5525 2.4139 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1146 REMARK 3 T33: 0.1206 T12: 0.0056 REMARK 3 T13: 0.0075 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.3919 L22: 1.5073 REMARK 3 L33: 2.9747 L12: -0.4008 REMARK 3 L13: 0.2941 L23: 0.0236 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: 0.0085 S13: -0.0680 REMARK 3 S21: 0.0074 S22: -0.0460 S23: -0.0277 REMARK 3 S31: 0.1107 S32: 0.2858 S33: 0.0764 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8OXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 31.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M CALCIUM ACETATE HYDRATE, 0.08 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 14.4% W/V POLYETHYLENE REMARK 280 GLYCOL 8,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.97050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.47750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.97050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.47750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 261 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 114 REMARK 465 SER A 115 REMARK 465 ASP A 116 REMARK 465 TYR A 117 REMARK 465 ARG A 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 63 O HOH A 282 1.49 REMARK 500 HG CYS A 63 O HOH A 279 1.59 REMARK 500 O HOH A 282 O HOH A 292 1.91 REMARK 500 SG CYS A 63 O HOH A 279 1.95 REMARK 500 O HOH A 278 O HOH A 279 2.12 REMARK 500 OD2 ASP A 45 O HOH A 201 2.13 REMARK 500 N GLY A 20 O HOH A 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 63 CB CYS A 63 SG 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 27 -115.06 50.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 8OXK A 22 118 UNP N1J9C5 N1J9C5_BLUG1 22 118 SEQADV 8OXK GLY A 20 UNP N1J9C5 EXPRESSION TAG SEQADV 8OXK SER A 21 UNP N1J9C5 EXPRESSION TAG SEQADV 8OXK PHE A 77 UNP N1J9C5 ILE 77 CONFLICT SEQRES 1 A 99 GLY SER ASP GLY TRP THR CYS ALA GLY SER ASP PHE ASP SEQRES 2 A 99 GLY ASP GLN VAL ARG GLY GLN ALA ARG HIS TRP VAL ASP SEQRES 3 A 99 GLN GLN LYS THR LYS PHE SER ASP PHE GLN THR HIS ASP SEQRES 4 A 99 GLY VAL GLN LEU CYS HIS PHE GLU LEU GLY GLU GLY ASN SEQRES 5 A 99 GLN LEU THR GLN SER PHE THR GLY PHE ARG ALA TYR CYS SEQRES 6 A 99 ASP GLU PRO GLY ASP VAL TYR ASN VAL ARG TYR TRP ASP SEQRES 7 A 99 VAL SER SER ARG THR TRP VAL LEU CYS THR HIS TYR ASP SEQRES 8 A 99 ILE ASP PHE GLU SER ASP TYR ARG FORMUL 2 HOH *93(H2 O) HELIX 1 AA1 GLY A 33 GLN A 47 1 15 SHEET 1 AA1 3 SER A 29 ASP A 32 0 SHEET 2 AA1 3 SER A 21 CYS A 26 -1 N CYS A 26 O SER A 29 SHEET 3 AA1 3 THR A 107 ILE A 111 -1 O ILE A 111 N SER A 21 SHEET 1 AA2 5 LYS A 50 GLN A 55 0 SHEET 2 AA2 5 GLN A 61 GLU A 66 -1 O HIS A 64 N LYS A 50 SHEET 3 AA2 5 PHE A 80 CYS A 84 -1 O CYS A 84 N CYS A 63 SHEET 4 AA2 5 VAL A 90 ASP A 97 -1 O TYR A 91 N TYR A 83 SHEET 5 AA2 5 THR A 102 LEU A 105 -1 O THR A 102 N ASP A 97 SSBOND 1 CYS A 26 CYS A 106 1555 1555 2.05 CRYST1 125.941 28.955 29.175 90.00 96.67 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007940 0.000000 0.000928 0.00000 SCALE2 0.000000 0.034536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.034509 0.00000