HEADER HYDROLASE 10-MAY-23 8P0E TITLE RUBELLA VIRUS P150 MACRO DOMAIN IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL POLYPROTEIN P200; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUBELLA VIRUS; SOURCE 3 ORGANISM_TAXID: 11041; SOURCE 4 GENE: NSP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MACRO DOMAIN, A1PP DOMAIN, ADP-RIBOSYLHYDROLASE, ADP-RIBOSE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.A.STOLL,Y.MODIS REVDAT 4 06-MAR-24 8P0E 1 JRNL REVDAT 3 28-FEB-24 8P0E 1 JRNL REVDAT 2 14-FEB-24 8P0E 1 JRNL REVDAT 1 17-JAN-24 8P0E 0 JRNL AUTH G.A.STOLL,N.NIKOLOPOULOS,H.ZHAI,L.ZHANG,C.H.DOUSE,Y.MODIS JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL ACTIVITY OF THE JRNL TITL 2 MACRODOMAIN FROM RUBELLA VIRUS P150. JRNL REF J.VIROL. V. 98 77723 2024 JRNL REFN ESSN 1098-5514 JRNL PMID 38289106 JRNL DOI 10.1128/JVI.01777-23 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 53.6 REMARK 3 NUMBER OF REFLECTIONS : 31159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.9200 - 3.5500 0.93 4909 251 0.1644 0.1601 REMARK 3 2 3.5400 - 2.8100 0.96 4892 259 0.1837 0.2105 REMARK 3 3 2.8100 - 2.4600 0.95 4755 256 0.2047 0.2318 REMARK 3 4 2.4600 - 2.2300 0.80 3973 235 0.2111 0.2479 REMARK 3 5 2.2300 - 2.0700 0.67 3375 165 0.2200 0.2390 REMARK 3 6 2.0700 - 1.9500 0.57 2835 157 0.2294 0.2354 REMARK 3 7 1.9500 - 1.8500 0.43 2158 105 0.2633 0.2678 REMARK 3 8 1.8500 - 1.7700 0.25 1227 66 0.2588 0.2827 REMARK 3 9 1.7700 - 1.7000 0.16 779 39 0.3086 0.3470 REMARK 3 10 1.7000 - 1.6500 0.10 511 27 0.3174 0.3920 REMARK 3 11 1.6500 - 1.5900 0.04 176 9 0.4026 0.4393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.157 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.792 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2859 REMARK 3 ANGLE : 0.846 3930 REMARK 3 CHIRALITY : 0.047 454 REMARK 3 PLANARITY : 0.017 510 REMARK 3 DIHEDRAL : 7.068 419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1252 14.7672 52.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.1980 REMARK 3 T33: 0.2348 T12: 0.0057 REMARK 3 T13: 0.0068 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.7484 L22: 1.8109 REMARK 3 L33: 2.2586 L12: -1.0187 REMARK 3 L13: -0.3008 L23: 0.2808 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.1707 S13: -0.5102 REMARK 3 S21: -0.1889 S22: -0.0619 S23: 0.2125 REMARK 3 S31: 0.4172 S32: 0.0863 S33: 0.0356 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3526 13.8635 57.6502 REMARK 3 T TENSOR REMARK 3 T11: 0.2606 T22: 0.4563 REMARK 3 T33: 0.2771 T12: 0.1010 REMARK 3 T13: -0.0199 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.1793 L22: 0.5372 REMARK 3 L33: 3.0563 L12: 0.2823 REMARK 3 L13: 0.2736 L23: 0.3806 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.4262 S13: -0.4551 REMARK 3 S21: 0.0716 S22: -0.1013 S23: -0.1399 REMARK 3 S31: 0.4796 S32: 0.8238 S33: -0.1012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9265 24.3901 64.8423 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.6061 REMARK 3 T33: 0.1915 T12: 0.0322 REMARK 3 T13: -0.0862 T23: -0.1906 REMARK 3 L TENSOR REMARK 3 L11: 2.3273 L22: 2.7503 REMARK 3 L33: 3.1984 L12: 0.0744 REMARK 3 L13: 0.0077 L23: -0.6710 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: -1.0840 S13: 0.3709 REMARK 3 S21: 0.5071 S22: -0.0084 S23: -0.2026 REMARK 3 S31: -0.6364 S32: 0.2078 S33: -0.2454 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7480 24.4032 56.1827 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.2084 REMARK 3 T33: 0.1891 T12: -0.0056 REMARK 3 T13: 0.0009 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 4.1969 L22: 1.1863 REMARK 3 L33: 3.2584 L12: -0.9448 REMARK 3 L13: -0.2158 L23: -0.1107 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.5240 S13: 0.2835 REMARK 3 S21: 0.0004 S22: 0.0249 S23: -0.1436 REMARK 3 S31: -0.1962 S32: 0.1808 S33: -0.1498 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2592 23.6685 64.3378 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.5283 REMARK 3 T33: 0.1942 T12: 0.0271 REMARK 3 T13: 0.0236 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 4.9971 L22: 2.7884 REMARK 3 L33: 4.4212 L12: -1.3536 REMARK 3 L13: -0.7109 L23: 0.4503 REMARK 3 S TENSOR REMARK 3 S11: 0.1114 S12: -0.1948 S13: 0.2732 REMARK 3 S21: 0.5502 S22: -0.3775 S23: -0.6384 REMARK 3 S31: -0.2619 S32: 0.1308 S33: -0.0526 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3537 9.6270 21.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1463 REMARK 3 T33: 0.2044 T12: 0.0090 REMARK 3 T13: 0.0161 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 2.0258 L22: 2.2371 REMARK 3 L33: 2.5100 L12: 0.6008 REMARK 3 L13: -0.5196 L23: -0.8504 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.0994 S13: -0.2563 REMARK 3 S21: 0.1424 S22: 0.1795 S23: -0.1022 REMARK 3 S31: 0.1464 S32: 0.1824 S33: -0.0275 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7886 11.3869 29.1232 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.3029 REMARK 3 T33: 0.2786 T12: -0.0033 REMARK 3 T13: 0.0361 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 3.0177 L22: 0.9950 REMARK 3 L33: 2.9449 L12: 0.7509 REMARK 3 L13: -0.5195 L23: 0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.0136 S13: -0.1519 REMARK 3 S21: 0.0981 S22: 0.0429 S23: 0.3435 REMARK 3 S31: 0.1176 S32: -0.6939 S33: -0.0015 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4226 20.1042 23.1364 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.1765 REMARK 3 T33: 0.1974 T12: 0.0331 REMARK 3 T13: 0.0598 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 2.1187 L22: 1.0859 REMARK 3 L33: 3.4300 L12: 0.8323 REMARK 3 L13: 0.5398 L23: 0.0997 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.0421 S13: 0.1225 REMARK 3 S21: 0.0527 S22: 0.1324 S23: 0.1858 REMARK 3 S31: -0.3328 S32: -0.2492 S33: -0.0861 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9258 22.0240 16.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.1852 REMARK 3 T33: 0.1783 T12: -0.0027 REMARK 3 T13: 0.0405 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 3.7936 L22: 2.3811 REMARK 3 L33: 4.2542 L12: 1.0838 REMARK 3 L13: 0.8764 L23: 2.0980 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.5947 S13: 0.3459 REMARK 3 S21: -0.1123 S22: 0.0601 S23: 0.1504 REMARK 3 S31: -0.5197 S32: 0.1656 S33: -0.0645 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9306 16.1290 24.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.1069 REMARK 3 T33: 0.1778 T12: -0.0180 REMARK 3 T13: 0.0509 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.3854 L22: 1.2475 REMARK 3 L33: 2.6480 L12: -0.9160 REMARK 3 L13: -0.7468 L23: -0.4290 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: 0.0035 S13: -0.0248 REMARK 3 S21: -0.1157 S22: 0.3279 S23: -0.1940 REMARK 3 S31: -0.4781 S32: 0.1979 S33: -0.1261 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1912 18.0874 6.8849 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.3840 REMARK 3 T33: 0.1732 T12: -0.0223 REMARK 3 T13: 0.0036 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 5.2410 L22: 2.2418 REMARK 3 L33: 5.4823 L12: 0.1388 REMARK 3 L13: -0.8454 L23: -1.0536 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: 0.5292 S13: 0.2745 REMARK 3 S21: -0.0917 S22: -0.0664 S23: 0.4266 REMARK 3 S31: -0.2392 S32: 0.1021 S33: -0.1563 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.5 REMARK 200 DATA SCALING SOFTWARE : STARANISO 1.0.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 73.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.93400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.4% PEG 6K, 1.26 M LICL, 0.1 M REMARK 280 BICINE PH 9, SUPPLEMENTED WITH 10% GLYCEROL FOR FREEZING, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.41500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.72500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.91500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.41500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.91500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.41500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.72500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.91500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.41500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.72500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.91500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 MET B 1 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 99 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG B 161 O HOH B 301 1.01 REMARK 500 NZ LYS A 32 O HOH A 301 1.23 REMARK 500 HG SER B 4 O HOH B 302 1.26 REMARK 500 CE LYS A 32 O HOH A 301 1.29 REMARK 500 O HOH A 304 O HOH A 305 1.34 REMARK 500 HZ1 LYS A 32 OD2 ASP B 63 1.49 REMARK 500 H ASP B 99 O HOH B 308 1.49 REMARK 500 O HOH A 434 O HOH A 447 1.57 REMARK 500 HZ2 LYS A 32 O HOH A 301 1.58 REMARK 500 H ASP A 99 O HOH A 307 1.60 REMARK 500 NH1 ARG B 161 O HOH B 301 1.74 REMARK 500 OG SER B 4 O HOH B 302 1.77 REMARK 500 O HOH A 340 O HOH A 401 1.84 REMARK 500 OD2 ASP B 99 O HOH B 303 1.89 REMARK 500 O HOH B 410 O HOH B 424 1.94 REMARK 500 O HOH B 301 O HOH B 423 1.94 REMARK 500 O HOH A 381 O HOH A 390 1.97 REMARK 500 OE2 GLU A 107 O HOH A 302 2.00 REMARK 500 O PRO A 97 O HOH A 303 2.02 REMARK 500 O HOH B 475 O HOH B 480 2.02 REMARK 500 O HOH B 388 O HOH B 442 2.03 REMARK 500 O HOH A 397 O HOH A 435 2.04 REMARK 500 O HOH A 315 O HOH A 334 2.07 REMARK 500 O HOH B 434 O HOH B 446 2.07 REMARK 500 NH1 ARG B 161 O HOH B 304 2.08 REMARK 500 O PRO B 97 O HOH B 305 2.08 REMARK 500 N ASP A 3 O HOH A 304 2.09 REMARK 500 O HOH B 428 O HOH B 468 2.12 REMARK 500 OD1 ASP A 5 O HOH A 305 2.16 REMARK 500 OD2 ASP B 26 O HOH B 306 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 306 O HOH B 306 2655 1.89 REMARK 500 O HOH A 385 O HOH B 448 6555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 32 CG LYS A 32 CD -0.213 REMARK 500 LYS A 32 CD LYS A 32 CE 0.197 REMARK 500 LYS A 32 CE LYS A 32 NZ 0.953 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 161 CB - CG - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 100 174.04 -55.59 REMARK 500 HIS B 81 -113.72 57.79 REMARK 500 ASP B 99 108.67 -52.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 161 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 462 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 483 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 484 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B 485 DISTANCE = 9.33 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8P0C RELATED DB: PDB REMARK 900 APO STRUCTURE DBREF 8P0E A 3 181 UNP G3M8F4 G3M8F4_RUBV 805 983 DBREF 8P0E B 3 181 UNP G3M8F4 G3M8F4_RUBV 805 983 SEQADV 8P0E MET A 1 UNP G3M8F4 INITIATING METHIONINE SEQADV 8P0E ALA A 2 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E PRO A 182 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E LEU A 183 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E GLU A 184 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS A 185 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS A 186 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS A 187 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS A 188 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS A 189 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS A 190 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E MET B 1 UNP G3M8F4 INITIATING METHIONINE SEQADV 8P0E ALA B 2 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E PRO B 182 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E LEU B 183 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E GLU B 184 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS B 185 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS B 186 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS B 187 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS B 188 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS B 189 UNP G3M8F4 EXPRESSION TAG SEQADV 8P0E HIS B 190 UNP G3M8F4 EXPRESSION TAG SEQRES 1 A 190 MET ALA ASP SER ASP ILE VAL GLU SER TYR ALA ARG ALA SEQRES 2 A 190 ALA GLY PRO VAL HIS LEU ARG VAL ARG ASP ILE MET ASP SEQRES 3 A 190 PRO PRO PRO GLY CYS LYS VAL VAL VAL ASN ALA ALA ASN SEQRES 4 A 190 GLU GLY LEU LEU ALA GLY SER GLY VAL CYS GLY ALA ILE SEQRES 5 A 190 PHE ALA ASN ALA THR PRO ALA LEU ALA ALA ASP CYS ARG SEQRES 6 A 190 ARG LEU ALA PRO CYS PRO THR GLY GLU ALA VAL ALA THR SEQRES 7 A 190 PRO GLY HIS GLY CYS GLY TYR THR HIS ILE ILE HIS ALA SEQRES 8 A 190 VAL ALA PRO ARG ARG PRO ARG ASP PRO ALA ALA LEU GLU SEQRES 9 A 190 GLU GLY GLU ALA LEU LEU GLU ARG ALA TYR ARG SER ILE SEQRES 10 A 190 VAL ALA LEU ALA ALA ALA ARG ARG TRP ALA CYS VAL ALA SEQRES 11 A 190 CYS PRO LEU LEU GLY ALA GLY VAL TYR GLY TRP SER ALA SEQRES 12 A 190 ALA GLU SER LEU ARG ALA ALA LEU ALA ALA THR ARG THR SEQRES 13 A 190 GLU PRO ALA GLU ARG VAL SER LEU HIS ILE CYS HIS PRO SEQRES 14 A 190 ASP ARG ALA THR LEU THR HIS ALA SER VAL LEU VAL PRO SEQRES 15 A 190 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 190 MET ALA ASP SER ASP ILE VAL GLU SER TYR ALA ARG ALA SEQRES 2 B 190 ALA GLY PRO VAL HIS LEU ARG VAL ARG ASP ILE MET ASP SEQRES 3 B 190 PRO PRO PRO GLY CYS LYS VAL VAL VAL ASN ALA ALA ASN SEQRES 4 B 190 GLU GLY LEU LEU ALA GLY SER GLY VAL CYS GLY ALA ILE SEQRES 5 B 190 PHE ALA ASN ALA THR PRO ALA LEU ALA ALA ASP CYS ARG SEQRES 6 B 190 ARG LEU ALA PRO CYS PRO THR GLY GLU ALA VAL ALA THR SEQRES 7 B 190 PRO GLY HIS GLY CYS GLY TYR THR HIS ILE ILE HIS ALA SEQRES 8 B 190 VAL ALA PRO ARG ARG PRO ARG ASP PRO ALA ALA LEU GLU SEQRES 9 B 190 GLU GLY GLU ALA LEU LEU GLU ARG ALA TYR ARG SER ILE SEQRES 10 B 190 VAL ALA LEU ALA ALA ALA ARG ARG TRP ALA CYS VAL ALA SEQRES 11 B 190 CYS PRO LEU LEU GLY ALA GLY VAL TYR GLY TRP SER ALA SEQRES 12 B 190 ALA GLU SER LEU ARG ALA ALA LEU ALA ALA THR ARG THR SEQRES 13 B 190 GLU PRO ALA GLU ARG VAL SER LEU HIS ILE CYS HIS PRO SEQRES 14 B 190 ASP ARG ALA THR LEU THR HIS ALA SER VAL LEU VAL PRO SEQRES 15 B 190 LEU GLU HIS HIS HIS HIS HIS HIS HET APR A 201 57 HET APR B 201 57 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 APR 2(C15 H23 N5 O14 P2) FORMUL 5 HOH *347(H2 O) HELIX 1 AA1 SER A 46 ASN A 55 1 10 HELIX 2 AA2 PRO A 58 ALA A 68 1 11 HELIX 3 AA3 ALA A 101 ARG A 124 1 24 HELIX 4 AA4 SER A 142 THR A 154 1 13 HELIX 5 AA5 ASP A 170 HIS A 186 1 17 HELIX 6 AA6 SER B 46 ASN B 55 1 10 HELIX 7 AA7 PRO B 58 ALA B 68 1 11 HELIX 8 AA8 ASP B 99 ALA B 101 5 3 HELIX 9 AA9 ALA B 102 ARG B 125 1 24 HELIX 10 AB1 SER B 142 THR B 154 1 13 HELIX 11 AB2 ASP B 170 HIS B 186 1 17 SHEET 1 AA1 4 ILE A 6 TYR A 10 0 SHEET 2 AA1 4 VAL A 17 VAL A 21 -1 O LEU A 19 N VAL A 7 SHEET 3 AA1 4 SER A 163 HIS A 168 1 O ILE A 166 N ARG A 20 SHEET 4 AA1 4 CYS A 128 CYS A 131 1 N VAL A 129 O HIS A 165 SHEET 1 AA2 3 VAL A 33 ALA A 38 0 SHEET 2 AA2 3 HIS A 87 VAL A 92 1 O ILE A 89 N VAL A 34 SHEET 3 AA2 3 ALA A 75 PRO A 79 -1 N VAL A 76 O HIS A 90 SHEET 1 AA3 4 ILE B 6 TYR B 10 0 SHEET 2 AA3 4 VAL B 17 VAL B 21 -1 O LEU B 19 N VAL B 7 SHEET 3 AA3 4 SER B 163 HIS B 168 1 O ILE B 166 N ARG B 20 SHEET 4 AA3 4 CYS B 128 CYS B 131 1 N VAL B 129 O HIS B 165 SHEET 1 AA4 3 VAL B 33 ALA B 38 0 SHEET 2 AA4 3 HIS B 87 VAL B 92 1 O ILE B 89 N VAL B 34 SHEET 3 AA4 3 ALA B 75 PRO B 79 -1 N VAL B 76 O HIS B 90 CISPEP 1 ALA A 68 PRO A 69 0 -0.45 CISPEP 2 PRO A 100 ALA A 101 0 12.41 CISPEP 3 ALA B 68 PRO B 69 0 -0.23 CRYST1 72.830 87.450 135.830 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007362 0.00000