HEADER TRANSFERASE 10-MAY-23 8P0P TITLE CRYSTAL STRUCTURE OF AANGT COMPLEXED TO UDP-2F-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGGREGATIBACTER APHROPHILUS; SOURCE 3 ORGANISM_TAXID: 732; SOURCE 4 GENE: DOL88_00785; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-GLYCOSYLATION, ASN TAUTOMERIC FORM, AAD, GLYCOSYLTRANSFERASE, GT-B, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.PINIELLO,J.MACIAS-LEON,C.ROVIRA,R.HURTADO-GUERRERO REVDAT 2 27-SEP-23 8P0P 1 JRNL REVDAT 1 06-SEP-23 8P0P 0 JRNL AUTH B.PINIELLO,J.MACIAS-LEON,S.MIYAZAKI,A.GARCIA-GARCIA, JRNL AUTH 2 I.COMPANON,M.GHIRARDELLO,V.TALEB,B.VELOZ,F.CORZANA, JRNL AUTH 3 A.MIYAGAWA,C.ROVIRA,R.HURTADO-GUERRERO JRNL TITL MOLECULAR BASIS FOR BACTERIAL N-GLYCOSYLATION BY A SOLUBLE JRNL TITL 2 HMW1C-LIKE N-GLYCOSYLTRANSFERASE. JRNL REF NAT COMMUN V. 14 5785 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37723184 JRNL DOI 10.1038/S41467-023-41238-1 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 129.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3940 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9966 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 3.62000 REMARK 3 B33 (A**2) : -3.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10272 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 9569 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13952 ; 1.397 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22042 ; 0.452 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1242 ; 7.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ; 6.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1732 ;18.737 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1553 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11944 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2400 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4974 ; 6.909 ; 7.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4974 ; 6.907 ; 7.525 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6214 ;10.285 ;13.533 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 6215 ;10.288 ;13.534 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5298 ; 6.676 ; 7.812 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 5291 ; 6.654 ; 7.804 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7739 ;10.220 ;14.242 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11336 ;12.833 ;69.750 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11337 ;12.832 ;69.750 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 804 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3924 -8.8135 58.4420 REMARK 3 T TENSOR REMARK 3 T11: 0.3846 T22: 0.3621 REMARK 3 T33: 0.1925 T12: 0.0521 REMARK 3 T13: 0.0117 T23: -0.0938 REMARK 3 L TENSOR REMARK 3 L11: 0.4151 L22: 0.9385 REMARK 3 L33: 0.2970 L12: 0.0270 REMARK 3 L13: 0.0950 L23: 0.0881 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0626 S13: -0.1261 REMARK 3 S21: 0.2547 S22: -0.1024 S23: 0.1353 REMARK 3 S31: -0.1319 S32: -0.0862 S33: 0.0868 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 804 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5241 -0.0141 6.2684 REMARK 3 T TENSOR REMARK 3 T11: 0.3803 T22: 0.7905 REMARK 3 T33: 0.0946 T12: 0.0673 REMARK 3 T13: -0.0776 T23: -0.2050 REMARK 3 L TENSOR REMARK 3 L11: 0.3866 L22: 0.3254 REMARK 3 L33: 0.7934 L12: 0.1063 REMARK 3 L13: -0.2342 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: 0.3959 S13: -0.1259 REMARK 3 S21: 0.0330 S22: -0.1375 S23: 0.0527 REMARK 3 S31: -0.3694 S32: -0.1106 S33: 0.0489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8P0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 258.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM ACETATE, SODIUM ACETATE, PEG REMARK 280 4000, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.00400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.00250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 129.00400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.00250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 108 -52.35 79.33 REMARK 500 PRO A 147 -39.81 -38.99 REMARK 500 ASP A 162 100.85 -165.53 REMARK 500 ASP A 223 -178.21 -69.85 REMARK 500 THR A 254 -70.46 -123.54 REMARK 500 GLU A 270 -76.46 -99.04 REMARK 500 ASP A 337 55.42 26.22 REMARK 500 LEU A 407 78.06 -116.71 REMARK 500 THR A 426 66.97 31.81 REMARK 500 GLN A 468 -6.47 83.35 REMARK 500 THR A 519 -75.03 -137.15 REMARK 500 ASN A 590 57.46 -94.53 REMARK 500 ASN A 591 82.91 -46.97 REMARK 500 ILE B 108 -47.18 81.27 REMARK 500 PRO B 147 -36.17 -39.30 REMARK 500 ASP B 162 100.07 -166.90 REMARK 500 THR B 254 -65.91 -122.56 REMARK 500 GLU B 270 -74.61 -103.06 REMARK 500 ASP B 337 56.33 25.19 REMARK 500 ALA B 367 -168.45 -124.26 REMARK 500 ALA B 372 -85.83 -120.56 REMARK 500 THR B 373 172.64 154.54 REMARK 500 LEU B 407 77.87 -116.99 REMARK 500 SER B 413 31.59 -93.67 REMARK 500 GLN B 468 -9.59 81.53 REMARK 500 THR B 519 -74.52 -131.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 60 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8P0P A 1 621 UNP A0A3M6PNT1_AGGAP DBREF2 8P0P A A0A3M6PNT1 1 621 DBREF1 8P0P B 1 621 UNP A0A3M6PNT1_AGGAP DBREF2 8P0P B A0A3M6PNT1 1 621 SEQADV 8P0P GLY A 0 UNP A0A3M6PNT EXPRESSION TAG SEQADV 8P0P ARG A 3 UNP A0A3M6PNT GLU 3 CONFLICT SEQADV 8P0P GLY B 0 UNP A0A3M6PNT EXPRESSION TAG SEQADV 8P0P ARG B 3 UNP A0A3M6PNT GLU 3 CONFLICT SEQRES 1 A 622 GLY MET SER ARG LYS LYS ASN PRO SER VAL ILE GLN PHE SEQRES 2 A 622 GLU LYS ALA ILE THR GLU LYS ASN TYR GLU ALA ALA CYS SEQRES 3 A 622 THR GLU LEU LEU ASP ILE LEU ASN LYS ILE ASP THR ASN SEQRES 4 A 622 PHE GLY ASP ILE GLU GLY ILE ASP PHE ASP TYR PRO GLN SEQRES 5 A 622 GLN LEU GLU THR LEU MET GLN ASP ARG ILE VAL TYR PHE SEQRES 6 A 622 CYS THR ARG MET SER ASN ALA ILE THR GLN LEU PHE CYS SEQRES 7 A 622 ASP PRO GLN PHE SER LEU SER GLU SER GLY ALA ASN ARG SEQRES 8 A 622 PHE PHE VAL VAL GLN ARG TRP LEU ASN LEU ILE PHE ALA SEQRES 9 A 622 SER SER PRO TYR ILE ASN ALA ASP HIS ILE LEU GLN THR SEQRES 10 A 622 TYR ASN CYS ASN PRO GLU ARG ASP SER ILE TYR ASP ILE SEQRES 11 A 622 TYR LEU GLU PRO ASN LYS ASN VAL LEU MET LYS PHE ALA SEQRES 12 A 622 VAL LEU TYR LEU PRO GLU SER ASN VAL ASN LEU ASN LEU SEQRES 13 A 622 ASP THR MET TRP GLU THR ASP LYS ASN ILE CYS GLY SER SEQRES 14 A 622 LEU CYS PHE ALA LEU GLN SER PRO ARG PHE ILE GLY THR SEQRES 15 A 622 PRO ALA ALA PHE SER LYS ARG SER THR ILE LEU GLN TRP SEQRES 16 A 622 PHE PRO ALA LYS LEU GLU GLN PHE HIS VAL LEU ASP ASP SEQRES 17 A 622 LEU PRO SER ASN ILE SER HIS ASP VAL TYR MET HIS CYS SEQRES 18 A 622 SER TYR ASP THR ALA GLU ASN LYS HIS ASN VAL LYS LYS SEQRES 19 A 622 ALA LEU ASN GLN VAL ILE ARG SER HIS LEU LEU LYS CYS SEQRES 20 A 622 GLY TRP GLN ASP ARG GLN ILE THR GLN ILE GLY MET ARG SEQRES 21 A 622 ASN GLY LYS PRO VAL MET VAL VAL VAL LEU GLU HIS PHE SEQRES 22 A 622 HIS SER SER HIS SER ILE TYR ARG THR HIS SER THR SER SEQRES 23 A 622 MET ILE ALA ALA ARG GLU GLN PHE TYR LEU ILE GLY LEU SEQRES 24 A 622 GLY ASN ASN ALA VAL ASP GLN ALA GLY ARG ASP VAL PHE SEQRES 25 A 622 ASP GLU PHE HIS GLU PHE ASP GLY SER ASN ILE LEU LYS SEQRES 26 A 622 LYS LEU ALA PHE LEU LYS GLU MET CYS GLU LYS ASN ASP SEQRES 27 A 622 ALA ALA VAL LEU TYR MET PRO SER ILE GLY MET ASP LEU SEQRES 28 A 622 ALA THR ILE PHE VAL SER ASN ALA ARG PHE ALA PRO ILE SEQRES 29 A 622 GLN VAL ILE ALA LEU GLY HIS PRO ALA THR THR HIS SER SEQRES 30 A 622 GLU PHE ILE GLU TYR VAL ILE VAL GLU ASP ASP TYR VAL SEQRES 31 A 622 GLY SER GLU SER CYS PHE SER GLU THR LEU LEU ARG LEU SEQRES 32 A 622 PRO LYS ASP ALA LEU PRO TYR VAL PRO SER SER LEU ALA SEQRES 33 A 622 PRO THR ASP VAL GLN TYR VAL LEU ARG GLU THR PRO GLU SEQRES 34 A 622 VAL VAL ASN ILE GLY ILE ALA ALA THR THR MET LYS LEU SEQRES 35 A 622 ASN PRO TYR PHE LEU GLU THR LEU LYS THR ILE ARG ASP SEQRES 36 A 622 ARG ALA LYS VAL LYS VAL HIS PHE HIS PHE ALA LEU GLY SEQRES 37 A 622 GLN SER ILE GLY ILE THR HIS PRO TYR VAL ALA ARG PHE SEQRES 38 A 622 ILE ARG SER TYR LEU GLY ASP ASP ALA THR ALA HIS PRO SEQRES 39 A 622 HIS SER PRO TYR ASN ARG TYR LEU ASP ILE LEU HIS ASN SEQRES 40 A 622 CYS ASP MET MET LEU ASN PRO PHE PRO PHE GLY ASN THR SEQRES 41 A 622 ASN GLY ILE ILE ASP MET VAL THR LEU GLY LEU VAL GLY SEQRES 42 A 622 VAL CYS LYS THR GLY PRO GLU VAL HIS GLU HIS ILE ASP SEQRES 43 A 622 GLU GLY LEU PHE LYS ARG LEU GLY LEU PRO GLU TRP LEU SEQRES 44 A 622 ILE ALA ASP SER VAL GLU ASP TYR ILE GLU ARG ALA ILE SEQRES 45 A 622 ARG LEU ALA GLU ASN HIS GLN GLU ARG LEU ALA LEU ARG SEQRES 46 A 622 ARG HIS ILE ILE GLU ASN ASN GLY LEU LYS THR LEU PHE SEQRES 47 A 622 SER GLY ASP PRO SER PRO MET GLY LYS THR LEU PHE ALA SEQRES 48 A 622 LYS LEU THR GLU TRP ARG GLN THR ASN GLY ILE SEQRES 1 B 622 GLY MET SER ARG LYS LYS ASN PRO SER VAL ILE GLN PHE SEQRES 2 B 622 GLU LYS ALA ILE THR GLU LYS ASN TYR GLU ALA ALA CYS SEQRES 3 B 622 THR GLU LEU LEU ASP ILE LEU ASN LYS ILE ASP THR ASN SEQRES 4 B 622 PHE GLY ASP ILE GLU GLY ILE ASP PHE ASP TYR PRO GLN SEQRES 5 B 622 GLN LEU GLU THR LEU MET GLN ASP ARG ILE VAL TYR PHE SEQRES 6 B 622 CYS THR ARG MET SER ASN ALA ILE THR GLN LEU PHE CYS SEQRES 7 B 622 ASP PRO GLN PHE SER LEU SER GLU SER GLY ALA ASN ARG SEQRES 8 B 622 PHE PHE VAL VAL GLN ARG TRP LEU ASN LEU ILE PHE ALA SEQRES 9 B 622 SER SER PRO TYR ILE ASN ALA ASP HIS ILE LEU GLN THR SEQRES 10 B 622 TYR ASN CYS ASN PRO GLU ARG ASP SER ILE TYR ASP ILE SEQRES 11 B 622 TYR LEU GLU PRO ASN LYS ASN VAL LEU MET LYS PHE ALA SEQRES 12 B 622 VAL LEU TYR LEU PRO GLU SER ASN VAL ASN LEU ASN LEU SEQRES 13 B 622 ASP THR MET TRP GLU THR ASP LYS ASN ILE CYS GLY SER SEQRES 14 B 622 LEU CYS PHE ALA LEU GLN SER PRO ARG PHE ILE GLY THR SEQRES 15 B 622 PRO ALA ALA PHE SER LYS ARG SER THR ILE LEU GLN TRP SEQRES 16 B 622 PHE PRO ALA LYS LEU GLU GLN PHE HIS VAL LEU ASP ASP SEQRES 17 B 622 LEU PRO SER ASN ILE SER HIS ASP VAL TYR MET HIS CYS SEQRES 18 B 622 SER TYR ASP THR ALA GLU ASN LYS HIS ASN VAL LYS LYS SEQRES 19 B 622 ALA LEU ASN GLN VAL ILE ARG SER HIS LEU LEU LYS CYS SEQRES 20 B 622 GLY TRP GLN ASP ARG GLN ILE THR GLN ILE GLY MET ARG SEQRES 21 B 622 ASN GLY LYS PRO VAL MET VAL VAL VAL LEU GLU HIS PHE SEQRES 22 B 622 HIS SER SER HIS SER ILE TYR ARG THR HIS SER THR SER SEQRES 23 B 622 MET ILE ALA ALA ARG GLU GLN PHE TYR LEU ILE GLY LEU SEQRES 24 B 622 GLY ASN ASN ALA VAL ASP GLN ALA GLY ARG ASP VAL PHE SEQRES 25 B 622 ASP GLU PHE HIS GLU PHE ASP GLY SER ASN ILE LEU LYS SEQRES 26 B 622 LYS LEU ALA PHE LEU LYS GLU MET CYS GLU LYS ASN ASP SEQRES 27 B 622 ALA ALA VAL LEU TYR MET PRO SER ILE GLY MET ASP LEU SEQRES 28 B 622 ALA THR ILE PHE VAL SER ASN ALA ARG PHE ALA PRO ILE SEQRES 29 B 622 GLN VAL ILE ALA LEU GLY HIS PRO ALA THR THR HIS SER SEQRES 30 B 622 GLU PHE ILE GLU TYR VAL ILE VAL GLU ASP ASP TYR VAL SEQRES 31 B 622 GLY SER GLU SER CYS PHE SER GLU THR LEU LEU ARG LEU SEQRES 32 B 622 PRO LYS ASP ALA LEU PRO TYR VAL PRO SER SER LEU ALA SEQRES 33 B 622 PRO THR ASP VAL GLN TYR VAL LEU ARG GLU THR PRO GLU SEQRES 34 B 622 VAL VAL ASN ILE GLY ILE ALA ALA THR THR MET LYS LEU SEQRES 35 B 622 ASN PRO TYR PHE LEU GLU THR LEU LYS THR ILE ARG ASP SEQRES 36 B 622 ARG ALA LYS VAL LYS VAL HIS PHE HIS PHE ALA LEU GLY SEQRES 37 B 622 GLN SER ILE GLY ILE THR HIS PRO TYR VAL ALA ARG PHE SEQRES 38 B 622 ILE ARG SER TYR LEU GLY ASP ASP ALA THR ALA HIS PRO SEQRES 39 B 622 HIS SER PRO TYR ASN ARG TYR LEU ASP ILE LEU HIS ASN SEQRES 40 B 622 CYS ASP MET MET LEU ASN PRO PHE PRO PHE GLY ASN THR SEQRES 41 B 622 ASN GLY ILE ILE ASP MET VAL THR LEU GLY LEU VAL GLY SEQRES 42 B 622 VAL CYS LYS THR GLY PRO GLU VAL HIS GLU HIS ILE ASP SEQRES 43 B 622 GLU GLY LEU PHE LYS ARG LEU GLY LEU PRO GLU TRP LEU SEQRES 44 B 622 ILE ALA ASP SER VAL GLU ASP TYR ILE GLU ARG ALA ILE SEQRES 45 B 622 ARG LEU ALA GLU ASN HIS GLN GLU ARG LEU ALA LEU ARG SEQRES 46 B 622 ARG HIS ILE ILE GLU ASN ASN GLY LEU LYS THR LEU PHE SEQRES 47 B 622 SER GLY ASP PRO SER PRO MET GLY LYS THR LEU PHE ALA SEQRES 48 B 622 LYS LEU THR GLU TRP ARG GLN THR ASN GLY ILE HET U2F A 701 36 HET UDP B 701 25 HETNAM U2F URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 3 U2F C15 H23 F N2 O16 P2 FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 5 HOH *8(H2 O) HELIX 1 AA1 SER A 8 GLU A 18 1 11 HELIX 2 AA2 ASN A 20 ASN A 38 1 19 HELIX 3 AA3 PRO A 50 GLU A 54 5 5 HELIX 4 AA4 LEU A 56 CYS A 77 1 22 HELIX 5 AA5 SER A 84 VAL A 94 1 11 HELIX 6 AA6 VAL A 94 SER A 104 1 11 HELIX 7 AA7 ALA A 110 GLN A 115 1 6 HELIX 8 AA8 THR A 116 ASN A 118 5 3 HELIX 9 AA9 ASN A 134 LEU A 144 1 11 HELIX 10 AB1 ASN A 154 ASP A 162 1 9 HELIX 11 AB2 ASP A 162 SER A 175 1 14 HELIX 12 AB3 THR A 181 GLN A 201 1 21 HELIX 13 AB4 PRO A 209 ASN A 211 5 3 HELIX 14 AB5 ILE A 212 CYS A 220 1 9 HELIX 15 AB6 SER A 221 ASP A 223 5 3 HELIX 16 AB7 HIS A 229 CYS A 246 1 18 HELIX 17 AB8 HIS A 276 SER A 283 1 8 HELIX 18 AB9 SER A 283 ALA A 288 1 6 HELIX 19 AC1 ASP A 304 ASP A 309 1 6 HELIX 20 AC2 ASN A 321 LYS A 335 1 15 HELIX 21 AC3 ASP A 349 SER A 356 1 8 HELIX 22 AC4 ASP A 387 VAL A 389 5 3 HELIX 23 AC5 THR A 437 LEU A 441 5 5 HELIX 24 AC6 ASN A 442 ALA A 456 1 15 HELIX 25 AC7 ILE A 470 ILE A 472 5 3 HELIX 26 AC8 THR A 473 GLY A 486 1 14 HELIX 27 AC9 PRO A 496 ASN A 506 1 11 HELIX 28 AD1 THR A 519 LEU A 528 1 10 HELIX 29 AD2 GLU A 539 LEU A 552 1 14 HELIX 30 AD3 PRO A 555 TRP A 557 5 3 HELIX 31 AD4 SER A 562 ASN A 576 1 15 HELIX 32 AD5 ASN A 576 ASN A 590 1 15 HELIX 33 AD6 ASN A 591 LEU A 596 5 6 HELIX 34 AD7 SER A 602 GLY A 620 1 19 HELIX 35 AD8 SER B 8 GLU B 18 1 11 HELIX 36 AD9 ASN B 20 ASN B 38 1 19 HELIX 37 AE1 PRO B 50 GLU B 54 5 5 HELIX 38 AE2 LEU B 56 CYS B 77 1 22 HELIX 39 AE3 SER B 84 VAL B 94 1 11 HELIX 40 AE4 VAL B 94 SER B 104 1 11 HELIX 41 AE5 ALA B 110 GLN B 115 1 6 HELIX 42 AE6 THR B 116 ASN B 118 5 3 HELIX 43 AE7 ASN B 134 LEU B 144 1 11 HELIX 44 AE8 ASN B 154 ASP B 162 1 9 HELIX 45 AE9 ASP B 162 SER B 175 1 14 HELIX 46 AF1 THR B 181 GLN B 201 1 21 HELIX 47 AF2 PRO B 209 ASN B 211 5 3 HELIX 48 AF3 ILE B 212 CYS B 220 1 9 HELIX 49 AF4 SER B 221 ASP B 223 5 3 HELIX 50 AF5 HIS B 229 LYS B 245 1 17 HELIX 51 AF6 HIS B 276 SER B 283 1 8 HELIX 52 AF7 SER B 283 ALA B 288 1 6 HELIX 53 AF8 ASP B 304 ASP B 309 1 6 HELIX 54 AF9 ASN B 321 LYS B 335 1 15 HELIX 55 AG1 ASP B 349 SER B 356 1 8 HELIX 56 AG2 ASP B 387 VAL B 389 5 3 HELIX 57 AG3 SER B 391 PHE B 395 5 5 HELIX 58 AG4 THR B 437 LEU B 441 5 5 HELIX 59 AG5 ASN B 442 ALA B 456 1 15 HELIX 60 AG6 ILE B 470 ILE B 472 5 3 HELIX 61 AG7 THR B 473 GLY B 486 1 14 HELIX 62 AG8 PRO B 496 ASN B 506 1 11 HELIX 63 AG9 THR B 519 LEU B 528 1 10 HELIX 64 AH1 GLU B 539 LEU B 552 1 14 HELIX 65 AH2 PRO B 555 TRP B 557 5 3 HELIX 66 AH3 SER B 562 ASN B 576 1 15 HELIX 67 AH4 ASN B 576 ASN B 591 1 16 HELIX 68 AH5 GLY B 592 LEU B 596 5 5 HELIX 69 AH6 SER B 602 GLY B 620 1 19 SHEET 1 AA1 4 MET A 258 ARG A 259 0 SHEET 2 AA1 4 LYS A 262 VAL A 268 -1 O LYS A 262 N ARG A 259 SHEET 3 AA1 4 TYR A 294 GLY A 299 1 O TYR A 294 N MET A 265 SHEET 4 AA1 4 GLU A 313 GLU A 316 1 O HIS A 315 N GLY A 297 SHEET 1 AA2 6 MET A 258 ARG A 259 0 SHEET 2 AA2 6 LYS A 262 VAL A 268 -1 O LYS A 262 N ARG A 259 SHEET 3 AA2 6 VAL A 340 MET A 343 1 O VAL A 340 N VAL A 266 SHEET 4 AA2 6 ILE A 363 ILE A 366 1 O VAL A 365 N LEU A 341 SHEET 5 AA2 6 TYR A 381 GLU A 385 1 O ILE A 383 N ILE A 366 SHEET 6 AA2 6 THR A 398 LEU A 402 1 O LEU A 402 N VAL A 384 SHEET 1 AA3 6 ALA A 489 HIS A 492 0 SHEET 2 AA3 6 LYS A 459 ALA A 465 1 N PHE A 464 O HIS A 492 SHEET 3 AA3 6 VAL A 429 ALA A 435 1 N ILE A 432 O HIS A 461 SHEET 4 AA3 6 MET A 509 LEU A 511 1 O MET A 509 N GLY A 433 SHEET 5 AA3 6 GLY A 532 LYS A 535 1 O VAL A 533 N MET A 510 SHEET 6 AA3 6 ILE A 559 ALA A 560 1 O ALA A 560 N CYS A 534 SHEET 1 AA4 4 MET B 258 ARG B 259 0 SHEET 2 AA4 4 LYS B 262 VAL B 268 -1 O LYS B 262 N ARG B 259 SHEET 3 AA4 4 TYR B 294 GLY B 299 1 O TYR B 294 N MET B 265 SHEET 4 AA4 4 GLU B 313 GLU B 316 1 O HIS B 315 N GLY B 297 SHEET 1 AA5 6 MET B 258 ARG B 259 0 SHEET 2 AA5 6 LYS B 262 VAL B 268 -1 O LYS B 262 N ARG B 259 SHEET 3 AA5 6 VAL B 340 MET B 343 1 O VAL B 340 N VAL B 266 SHEET 4 AA5 6 ILE B 363 ILE B 366 1 O VAL B 365 N LEU B 341 SHEET 5 AA5 6 TYR B 381 GLU B 385 1 O ILE B 383 N ILE B 366 SHEET 6 AA5 6 THR B 398 LEU B 402 1 O LEU B 402 N VAL B 384 SHEET 1 AA6 6 ALA B 489 HIS B 492 0 SHEET 2 AA6 6 LYS B 459 ALA B 465 1 N PHE B 464 O HIS B 492 SHEET 3 AA6 6 VAL B 429 ALA B 435 1 N ILE B 432 O HIS B 461 SHEET 4 AA6 6 MET B 509 LEU B 511 1 O MET B 509 N GLY B 433 SHEET 5 AA6 6 GLY B 532 LYS B 535 1 O VAL B 533 N MET B 510 SHEET 6 AA6 6 ILE B 559 ALA B 560 1 O ALA B 560 N CYS B 534 CISPEP 1 PHE A 514 PRO A 515 0 5.64 CISPEP 2 PHE B 514 PRO B 515 0 7.19 CRYST1 47.068 114.005 258.008 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003876 0.00000