HEADER SIGNALING PROTEIN 10-MAY-23 8P0S TITLE CRYSTAL STRUCTURE HR1 DOMAIN OF RHO-ASSOCIATED COILED-COIL PROTEIN TITLE 2 KINASES (ROCK-HR1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RENAL CARCINOMA ANTIGEN NY-REN-35,RHO-ASSOCIATED,COILED- COMPND 5 COIL-CONTAINING PROTEIN KINASE 1,COILED-COIL-CONTAINING PROTEIN COMPND 6 KINASE I,ROCK-I,P160 ROCK-1,P160ROCK; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: GS IS DUE TO THE CLONING SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COILED COIL, HR1, RHO KINASE, ROCK, PRK, PKN, RHOTEKIN, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.N.DUBEY,R.DVORSKY,L.GREMER,I.R.VETTER,L.SCHMITT,G.GROTH, AUTHOR 2 M.R.AHMADIAN REVDAT 1 21-JUN-23 8P0S 0 JRNL AUTH B.N.DUBEY,E.AMIN,R.DVORSKY,L.GREMER,J.M.MOLL,M.WOLFF, JRNL AUTH 2 M.GRAEWERT,B.TSCHAPEK,I.R.VETTER,L.SCHMITT,D.SVERGUN, JRNL AUTH 3 R.RAUNSER,G.GROTH,L.NAGEL-STEGER,M.R.AHMADIAN JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE P160 JRNL TITL 2 RHO-ASSOCIATED COILED-COIL-CONTAINING PROTEIN KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158:) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 16169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0500 - 4.0000 0.99 2667 141 0.1993 0.2732 REMARK 3 2 4.0000 - 3.1700 1.00 2593 136 0.1991 0.2882 REMARK 3 3 3.1700 - 2.7700 1.00 2543 134 0.2586 0.3139 REMARK 3 4 2.7700 - 2.5200 0.99 2532 134 0.2492 0.3293 REMARK 3 5 2.5200 - 2.3400 0.99 2529 133 0.2335 0.3083 REMARK 3 6 2.3400 - 2.2000 0.99 2496 131 0.2281 0.2838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2250 REMARK 3 ANGLE : 1.139 2996 REMARK 3 CHIRALITY : 0.055 330 REMARK 3 PLANARITY : 0.008 401 REMARK 3 DIHEDRAL : 5.718 297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.820 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 150 MM TRI-POTASSIUM REMARK 280 CITRATE AND 4% MPD (2-METHYL-2,4-PENTANEDIOL), PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.11000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.53500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.11000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.13000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.53500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 133 O DBREF 8P0S A 3 133 UNP Q13464 ROCK1_HUMAN 420 550 DBREF 8P0S B 3 133 UNP Q13464 ROCK1_HUMAN 420 550 SEQADV 8P0S GLY A 1 UNP Q13464 EXPRESSION TAG SEQADV 8P0S SER A 2 UNP Q13464 EXPRESSION TAG SEQADV 8P0S GLY B 1 UNP Q13464 EXPRESSION TAG SEQADV 8P0S SER B 2 UNP Q13464 EXPRESSION TAG SEQRES 1 A 133 GLY SER ALA ASP LYS SER LEU GLN GLU SER LEU GLN LYS SEQRES 2 A 133 THR ILE TYR LYS LEU GLU GLU GLN LEU HIS ASN GLU MSE SEQRES 3 A 133 GLN LEU LYS ASP GLU MSE GLU GLN LYS CYS ARG THR SER SEQRES 4 A 133 ASN ILE LYS LEU ASP LYS ILE MSE LYS GLU LEU ASP GLU SEQRES 5 A 133 GLU GLY ASN GLN ARG ARG ASN LEU GLU SER THR VAL SER SEQRES 6 A 133 GLN ILE GLU LYS GLU LYS MSE LEU LEU GLN HIS ARG ILE SEQRES 7 A 133 ASN GLU TYR GLN ARG LYS ALA GLU GLN GLU ASN GLU LYS SEQRES 8 A 133 ARG ARG ASN VAL GLU ASN GLU VAL SER THR LEU LYS ASP SEQRES 9 A 133 GLN LEU GLU ASP LEU LYS LYS VAL SER GLN ASN SER GLN SEQRES 10 A 133 LEU ALA ASN GLU LYS LEU SER GLN LEU GLN LYS GLN LEU SEQRES 11 A 133 GLU GLU ALA SEQRES 1 B 133 GLY SER ALA ASP LYS SER LEU GLN GLU SER LEU GLN LYS SEQRES 2 B 133 THR ILE TYR LYS LEU GLU GLU GLN LEU HIS ASN GLU MSE SEQRES 3 B 133 GLN LEU LYS ASP GLU MSE GLU GLN LYS CYS ARG THR SER SEQRES 4 B 133 ASN ILE LYS LEU ASP LYS ILE MSE LYS GLU LEU ASP GLU SEQRES 5 B 133 GLU GLY ASN GLN ARG ARG ASN LEU GLU SER THR VAL SER SEQRES 6 B 133 GLN ILE GLU LYS GLU LYS MSE LEU LEU GLN HIS ARG ILE SEQRES 7 B 133 ASN GLU TYR GLN ARG LYS ALA GLU GLN GLU ASN GLU LYS SEQRES 8 B 133 ARG ARG ASN VAL GLU ASN GLU VAL SER THR LEU LYS ASP SEQRES 9 B 133 GLN LEU GLU ASP LEU LYS LYS VAL SER GLN ASN SER GLN SEQRES 10 B 133 LEU ALA ASN GLU LYS LEU SER GLN LEU GLN LYS GLN LEU SEQRES 11 B 133 GLU GLU ALA MODRES 8P0S MSE A 26 MET MODIFIED RESIDUE MODRES 8P0S MSE A 32 MET MODIFIED RESIDUE MODRES 8P0S MSE A 47 MET MODIFIED RESIDUE MODRES 8P0S MSE A 72 MET MODIFIED RESIDUE MODRES 8P0S MSE B 26 MET MODIFIED RESIDUE MODRES 8P0S MSE B 32 MET MODIFIED RESIDUE MODRES 8P0S MSE B 47 MET MODIFIED RESIDUE MODRES 8P0S MSE B 72 MET MODIFIED RESIDUE HET MSE A 26 8 HET MSE A 32 8 HET MSE A 47 13 HET MSE A 72 8 HET MSE B 26 13 HET MSE B 32 8 HET MSE B 47 8 HET MSE B 72 13 HET DTT A 701 8 HETNAM MSE SELENOMETHIONINE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 DTT C4 H10 O2 S2 FORMUL 4 HOH *25(H2 O) HELIX 1 AA1 GLY A 1 ALA A 133 1 133 HELIX 2 AA2 ALA B 3 LEU B 130 1 128 LINK C GLU A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N GLN A 27 1555 1555 1.34 LINK C GLU A 31 N MSE A 32 1555 1555 1.32 LINK C MSE A 32 N GLU A 33 1555 1555 1.34 LINK C ILE A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N LYS A 48 1555 1555 1.34 LINK C LYS A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N LEU A 73 1555 1555 1.34 LINK C GLU B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N GLN B 27 1555 1555 1.33 LINK C GLU B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N GLU B 33 1555 1555 1.33 LINK C ILE B 46 N MSE B 47 1555 1555 1.32 LINK C MSE B 47 N LYS B 48 1555 1555 1.34 LINK C LYS B 71 N MSE B 72 1555 1555 1.33 LINK C MSE B 72 N LEU B 73 1555 1555 1.33 CRYST1 48.260 87.070 148.220 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020721 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006747 0.00000