HEADER IMMUNE SYSTEM 16-MAY-23 8P2T TITLE BOVINE NAIVE ULTRALONG ANTIBODY ABD08* COLLECTED AT 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY D08* HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY D08* LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_TAXID: 9913; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 7 EXPRESSION_SYSTEM_ATCC_NUMBER: 293; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPINBOVH; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 11 ORGANISM_TAXID: 9913; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 15 EXPRESSION_SYSTEM_ATCC_NUMBER: 293; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: POPINBOVL KEYWDS ULTRALONG, IMMUNOGLOBULIN, NAIVE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.D.CLARKE,A.DOUANGAMATH,H.MIKOLAJEK,D.I.STUART,R.J.OWENS REVDAT 1 10-JUL-24 8P2T 0 JRNL AUTH J.D.CLARKE,A.DOUANGAMATH,H.MIKOLAJEK,M.B.D.PLACIDO, JRNL AUTH 2 D.I.STUART,J.HAMMOND,R.J.OWENS JRNL TITL THE IMPACT OF CHAIN-EXCHANGE ON BOVINE ULTRALONG JRNL TITL 2 IMMUNOGLOBULINS. JRNL REF ACTA CRYSTALLOGRAPHICA 2024 JRNL REF 2 SECTION F REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 539 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -1.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.837 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3693 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3207 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5079 ; 1.639 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7457 ; 0.596 ; 1.557 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 7.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 4.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;11.895 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4370 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 802 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1977 ; 2.310 ; 2.645 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1976 ; 2.310 ; 2.645 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2479 ; 2.781 ; 4.733 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2480 ; 2.781 ; 4.733 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 2.363 ; 2.856 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1717 ; 2.363 ; 2.856 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2589 ; 2.955 ; 5.123 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4169 ; 3.974 ;36.070 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4170 ; 3.973 ;36.070 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6900 ; 5.463 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8P2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : 130X80 MICRORAD APERTURE, REMARK 200 HORIZONTALLY AND VERTICALLY REMARK 200 FOCUSING MIRRORS, 4XSLITS, REMARK 200 VARIABLE FOCUS BEAM REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.6.374-GCCD9EB9A-DIALS-2.1 REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.11.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79276 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 2.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 5.8.0405 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG 1000, 12.5% W/V PEG REMARK 280 3350, 12.5% V/V MPD, 0.03M SODIUM FLUORIDE, 0.03M SODIUM BROMIDE, REMARK 280 0.03M SODIUM IODIDE, 0.1 M MOPS/HEPES-NA, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H 1 REMARK 465 GLY H 2 REMARK 465 ILE H 3 REMARK 465 LEU H 4 REMARK 465 PRO H 5 REMARK 465 SER H 6 REMARK 465 PRO H 7 REMARK 465 GLY H 8 REMARK 465 MET H 9 REMARK 465 PRO H 10 REMARK 465 ALA H 11 REMARK 465 LEU H 12 REMARK 465 LEU H 13 REMARK 465 SER H 14 REMARK 465 LEU H 15 REMARK 465 VAL H 16 REMARK 465 SER H 17 REMARK 465 LEU H 18 REMARK 465 LEU H 19 REMARK 465 SER H 20 REMARK 465 VAL H 21 REMARK 465 LEU H 22 REMARK 465 LEU H 23 REMARK 465 MET H 24 REMARK 465 GLY H 25 REMARK 465 CYS H 26 REMARK 465 VAL H 27 REMARK 465 ALA H 28 REMARK 465 GLN H 29 REMARK 465 PRO H 269 REMARK 465 GLY H 270 REMARK 465 SER H 271 REMARK 465 THR H 272 REMARK 465 SER H 273 REMARK 465 GLY H 274 REMARK 465 THR H 275 REMARK 465 HIS H 304 REMARK 465 HIS H 305 REMARK 465 HIS H 306 REMARK 465 HIS H 307 REMARK 465 MET L 1 REMARK 465 GLY L 2 REMARK 465 ILE L 3 REMARK 465 LEU L 4 REMARK 465 PRO L 5 REMARK 465 SER L 6 REMARK 465 PRO L 7 REMARK 465 GLY L 8 REMARK 465 MET L 9 REMARK 465 PRO L 10 REMARK 465 ALA L 11 REMARK 465 LEU L 12 REMARK 465 LEU L 13 REMARK 465 SER L 14 REMARK 465 LEU L 15 REMARK 465 VAL L 16 REMARK 465 SER L 17 REMARK 465 LEU L 18 REMARK 465 LEU L 19 REMARK 465 SER L 20 REMARK 465 VAL L 21 REMARK 465 LEU L 22 REMARK 465 LEU L 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 31 CG CD OE1 NE2 REMARK 470 LYS H 71 CD CE NZ REMARK 470 LYS H 92 CE NZ REMARK 470 LYS H 103 NZ REMARK 470 GLU H 116 CD OE1 OE2 REMARK 470 ASP H 136 CG OD1 OD2 REMARK 470 ASP H 142 CB CG OD1 OD2 REMARK 470 GLN H 189 CG CD OE1 NE2 REMARK 470 LEU H 192 CD2 REMARK 470 LYS H 204 CE NZ REMARK 470 LYS H 215 CD CE NZ REMARK 470 LYS H 244 CD CE NZ REMARK 470 SER H 256 CB OG REMARK 470 VAL H 268 CG1 CG2 REMARK 470 LYS H 290 CG CD CE NZ REMARK 470 MET L 24 SD CE REMARK 470 VAL L 27 CG1 REMARK 470 SER L 80 OG REMARK 470 LYS L 137 CG CD CE NZ REMARK 470 LYS L 156 CD CE NZ REMARK 470 ILE L 182 CD1 REMARK 470 ARG L 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 198 NZ REMARK 470 LYS L 213 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 469 O HOH L 472 1.88 REMARK 500 O HOH L 345 O HOH L 489 1.93 REMARK 500 O HOH L 414 O HOH L 446 2.01 REMARK 500 NE2 GLN L 103 OE1 GLU L 105 2.11 REMARK 500 O HOH L 473 O HOH L 478 2.12 REMARK 500 O HOH H 508 O HOH H 727 2.13 REMARK 500 O HOH H 512 O HOH H 525 2.16 REMARK 500 O HOH H 730 O HOH L 311 2.17 REMARK 500 O HOH H 538 O HOH H 769 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU L 116 CD GLU L 116 OE1 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 94 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 43 -7.57 85.18 REMARK 500 SER H 58 -148.83 -117.95 REMARK 500 CYS L 26 -52.15 -123.30 REMARK 500 CYS L 26 -51.09 -124.03 REMARK 500 GLN L 39 -169.64 -100.39 REMARK 500 ASN L 51 -87.21 -133.23 REMARK 500 ASP L 75 -43.35 67.92 REMARK 500 ALA L 108 170.58 177.04 REMARK 500 SER L 118 -118.61 55.08 REMARK 500 SER L 195 76.74 -68.15 REMARK 500 ASN L 196 18.12 154.05 REMARK 500 SER L 197 -13.08 75.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 806 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH H 807 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH L 532 DISTANCE = 6.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY H 152 O REMARK 620 2 LEU H 154 O 102.2 REMARK 620 3 HOH H 548 O 90.5 86.9 REMARK 620 4 HOH H 553 O 172.5 81.2 96.4 REMARK 620 5 HOH H 695 O 75.9 100.2 165.7 97.1 REMARK 620 N 1 2 3 4 DBREF 8P2T H 1 307 PDB 8P2T 8P2T 1 307 DBREF 8P2T L 1 239 PDB 8P2T 8P2T 1 239 SEQRES 1 H 307 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 H 307 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 H 307 VAL ALA GLN VAL GLN LEU ARG GLU SER GLY PRO SER LEU SEQRES 4 H 307 VAL LYS PRO SER GLN THR LEU SER LEU THR CYS THR ALA SEQRES 5 H 307 SER GLY SER SER LEU SER ASP GLU ALA VAL GLY TRP VAL SEQRES 6 H 307 ARG GLN ALA PRO GLY LYS SER LEU GLU TRP LEU GLY SER SEQRES 7 H 307 ILE ASP THR GLY GLY ASN THR GLY TYR ASN PRO ASN LEU SEQRES 8 H 307 LYS THR ARG LEU SER ILE THR LYS ASP ASN SER LYS SER SEQRES 9 H 307 GLN VAL SER LEU SER MET SER SER VAL THR PRO GLU ASP SEQRES 10 H 307 SER ALA THR TYR PHE CYS ALA THR VAL HIS GLN GLU THR SEQRES 11 H 307 HIS GLN THR CYS PRO ASP GLY TYR ASN SER GLY ASP ASP SEQRES 12 H 307 CYS GLY ARG GLY ASN TRP ASP CYS GLY THR LEU ASP CYS SEQRES 13 H 307 TRP ARG CYS ASP TRP GLY GLY PHE CYS ARG ALA SER THR SEQRES 14 H 307 ASP TYR ARG SER VAL THR ALA THR TYR THR TYR GLU TRP SEQRES 15 H 307 TYR ILE ASP THR TRP GLY GLN GLY LEU LEU VAL THR VAL SEQRES 16 H 307 SER SER ALA SER THR THR ALA PRO LYS VAL TYR PRO LEU SEQRES 17 H 307 SER SER CYS CYS GLY ASP LYS SER SER SER THR VAL THR SEQRES 18 H 307 LEU GLY CYS LEU VAL SER SER TYR MET PRO GLU PRO VAL SEQRES 19 H 307 THR VAL THR TRP ASN SER GLY ALA LEU LYS SER GLY VAL SEQRES 20 H 307 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 21 H 307 SER LEU SER SER MET VAL THR VAL PRO GLY SER THR SER SEQRES 22 H 307 GLY THR GLN THR PHE THR CYS ASN VAL ALA HIS PRO ALA SEQRES 23 H 307 SER SER THR LYS VAL ASP LYS ALA VAL ASP PRO ARG CYS SEQRES 24 H 307 GLY LYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 239 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 L 239 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 L 239 VAL ALA GLN PRO SER SER VAL SER GLY SER LEU GLY GLN SEQRES 4 L 239 ARG VAL SER ILE THR CYS SER GLY SER SER SER ASN VAL SEQRES 5 L 239 GLY ASN GLY TYR VAL SER TRP TYR GLN LEU ILE PRO GLY SEQRES 6 L 239 SER ALA PRO ARG THR LEU ILE TYR GLY ASP THR SER ARG SEQRES 7 L 239 ALA SER GLY VAL PRO ASP ARG PHE SER GLY SER ARG SER SEQRES 8 L 239 GLY ASN THR ALA THR LEU THR ILE SER SER LEU GLN ALA SEQRES 9 L 239 GLU ASP GLU ALA ASP TYR PHE CYS ALA SER ALA GLU ASP SEQRES 10 L 239 SER SER SER ASN ALA VAL PHE GLY SER GLY THR THR LEU SEQRES 11 L 239 THR VAL LEU GLY GLN PRO LYS SER PRO PRO SER VAL THR SEQRES 12 L 239 LEU PHE PRO PRO SER THR GLU GLU LEU ASN GLY ASN LYS SEQRES 13 L 239 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 14 L 239 SER VAL THR VAL VAL TRP LYS ALA ASP GLY SER THR ILE SEQRES 15 L 239 THR ARG ASN VAL GLU THR THR ARG ALA SER LYS GLN SER SEQRES 16 L 239 ASN SER LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 17 L 239 SER SER ASP TRP LYS SER LYS GLY SER TYR SER CYS GLU SEQRES 18 L 239 VAL THR HIS GLU GLY SER THR VAL THR LYS THR VAL LYS SEQRES 19 L 239 PRO SER GLU CYS SER HET NA H 401 1 HET MRD H 402 8 HETNAM NA SODIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 NA NA 1+ FORMUL 4 MRD C6 H14 O2 FORMUL 5 HOH *539(H2 O) HELIX 1 AA1 LEU H 91 THR H 93 5 3 HELIX 2 AA2 ASN H 101 LYS H 103 5 3 HELIX 3 AA3 THR H 114 SER H 118 5 5 HELIX 4 AA4 ALA H 167 TYR H 171 5 5 HELIX 5 AA5 SER H 210 LYS H 215 1 6 HELIX 6 AA6 SER H 240 ALA H 242 5 3 HELIX 7 AA7 PRO H 285 SER H 288 5 4 HELIX 8 AA8 ASN L 51 GLY L 55 5 5 HELIX 9 AA9 GLN L 103 GLU L 107 5 5 HELIX 10 AB1 ASP L 117 SER L 120 5 4 HELIX 11 AB2 SER L 148 GLY L 154 1 7 HELIX 12 AB3 SER L 209 SER L 214 1 6 SHEET 1 AA1 4 GLN H 31 SER H 35 0 SHEET 2 AA1 4 LEU H 46 SER H 53 -1 O SER H 53 N GLN H 31 SHEET 3 AA1 4 GLN H 105 MET H 110 -1 O MET H 110 N LEU H 46 SHEET 4 AA1 4 LEU H 95 ASP H 100 -1 N ASP H 100 O GLN H 105 SHEET 1 AA2 6 LEU H 39 VAL H 40 0 SHEET 2 AA2 6 LEU H 191 VAL H 195 1 O THR H 194 N VAL H 40 SHEET 3 AA2 6 ALA H 119 THR H 133 -1 N TYR H 121 O LEU H 191 SHEET 4 AA2 6 ALA H 61 GLN H 67 -1 N VAL H 65 O PHE H 122 SHEET 5 AA2 6 LEU H 73 ILE H 79 -1 O GLU H 74 N ARG H 66 SHEET 6 AA2 6 THR H 85 TYR H 87 -1 O GLY H 86 N SER H 78 SHEET 1 AA3 4 LEU H 39 VAL H 40 0 SHEET 2 AA3 4 LEU H 191 VAL H 195 1 O THR H 194 N VAL H 40 SHEET 3 AA3 4 ALA H 119 THR H 133 -1 N TYR H 121 O LEU H 191 SHEET 4 AA3 4 THR H 177 TRP H 187 -1 O THR H 179 N HIS H 131 SHEET 1 AA4 2 CYS H 156 ARG H 158 0 SHEET 2 AA4 2 ARG H 172 VAL H 174 -1 O ARG H 172 N ARG H 158 SHEET 1 AA5 4 LYS H 204 SER H 209 0 SHEET 2 AA5 4 VAL H 220 TYR H 229 -1 O SER H 227 N LYS H 204 SHEET 3 AA5 4 TYR H 260 VAL H 268 -1 O VAL H 268 N VAL H 220 SHEET 4 AA5 4 VAL H 247 THR H 249 -1 N HIS H 248 O MET H 265 SHEET 1 AA6 4 LYS H 204 SER H 209 0 SHEET 2 AA6 4 VAL H 220 TYR H 229 -1 O SER H 227 N LYS H 204 SHEET 3 AA6 4 TYR H 260 VAL H 268 -1 O VAL H 268 N VAL H 220 SHEET 4 AA6 4 VAL H 253 LEU H 254 -1 N VAL H 253 O SER H 261 SHEET 1 AA7 3 THR H 235 TRP H 238 0 SHEET 2 AA7 3 THR H 279 HIS H 284 -1 O ASN H 281 N THR H 237 SHEET 3 AA7 3 THR H 289 ALA H 294 -1 O VAL H 291 N VAL H 282 SHEET 1 AA8 6 SER L 32 SER L 36 0 SHEET 2 AA8 6 THR L 128 LEU L 133 1 O LEU L 133 N GLY L 35 SHEET 3 AA8 6 ALA L 108 GLU L 116 -1 N ALA L 108 O LEU L 130 SHEET 4 AA8 6 SER L 58 LEU L 62 -1 N LEU L 62 O ASP L 109 SHEET 5 AA8 6 ARG L 69 TYR L 73 -1 O LEU L 71 N TRP L 59 SHEET 6 AA8 6 SER L 77 ARG L 78 -1 O SER L 77 N TYR L 73 SHEET 1 AA9 4 SER L 32 SER L 36 0 SHEET 2 AA9 4 THR L 128 LEU L 133 1 O LEU L 133 N GLY L 35 SHEET 3 AA9 4 ALA L 108 GLU L 116 -1 N ALA L 108 O LEU L 130 SHEET 4 AA9 4 ASN L 121 PHE L 124 -1 O VAL L 123 N SER L 114 SHEET 1 AB1 3 VAL L 41 SER L 46 0 SHEET 2 AB1 3 THR L 94 ILE L 99 -1 O LEU L 97 N ILE L 43 SHEET 3 AB1 3 PHE L 86 SER L 91 -1 N SER L 87 O THR L 98 SHEET 1 AB2 4 SER L 141 PHE L 145 0 SHEET 2 AB2 4 LYS L 156 PHE L 166 -1 O LEU L 162 N THR L 143 SHEET 3 AB2 4 TYR L 199 THR L 208 -1 O LEU L 207 N ALA L 157 SHEET 4 AB2 4 VAL L 186 THR L 188 -1 N GLU L 187 O TYR L 204 SHEET 1 AB3 4 SER L 141 PHE L 145 0 SHEET 2 AB3 4 LYS L 156 PHE L 166 -1 O LEU L 162 N THR L 143 SHEET 3 AB3 4 TYR L 199 THR L 208 -1 O LEU L 207 N ALA L 157 SHEET 4 AB3 4 SER L 192 LYS L 193 -1 N SER L 192 O ALA L 200 SHEET 1 AB4 4 SER L 180 ILE L 182 0 SHEET 2 AB4 4 THR L 172 ALA L 177 -1 N TRP L 175 O ILE L 182 SHEET 3 AB4 4 TYR L 218 HIS L 224 -1 O GLU L 221 N VAL L 174 SHEET 4 AB4 4 SER L 227 VAL L 233 -1 O VAL L 229 N VAL L 222 SSBOND 1 CYS H 50 CYS H 123 1555 1555 2.12 SSBOND 2 CYS H 134 CYS H 156 1555 1555 2.06 SSBOND 3 CYS H 144 CYS H 151 1555 1555 2.13 SSBOND 4 CYS H 159 CYS H 165 1555 1555 2.09 SSBOND 5 CYS H 211 CYS H 299 1555 1555 2.12 SSBOND 6 CYS H 212 CYS L 238 1555 1555 2.13 SSBOND 7 CYS H 224 CYS H 280 1555 1555 2.03 SSBOND 8 CYS L 45 CYS L 112 1555 1555 2.10 SSBOND 9 CYS L 161 CYS L 220 1555 1555 2.02 LINK O GLY H 152 NA NA H 401 1555 1555 2.59 LINK O LEU H 154 NA NA H 401 1555 1555 2.45 LINK NA NA H 401 O HOH H 548 1555 1555 2.30 LINK NA NA H 401 O HOH H 553 1555 1555 2.23 LINK NA NA H 401 O HOH H 695 1555 1555 2.43 CISPEP 1 MET H 230 PRO H 231 0 -6.79 CISPEP 2 GLU H 232 PRO H 233 0 -2.57 CISPEP 3 GLU H 232 PRO H 233 0 -2.86 CISPEP 4 TYR L 167 PRO L 168 0 1.61 CRYST1 65.030 70.860 96.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015378 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010416 0.00000