HEADER BIOSYNTHETIC PROTEIN 17-MAY-23 8P37 TITLE STRUCTURE A CATALYTICALLY INACTIVE MUTANT OF THE IMP DEHYDROGENASE TITLE 2 RELATED PROTEIN GUAB3 FROM SYNECHOCYSTIS PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMP DEHYDROGENASE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 GENE: GUAB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX OF THE ENZYME WITH COFACTOR AND PRODUCT, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HERNANDEZ-GOMEZ,D.FERNANDEZ-JUSTEL,R.M.BUEY REVDAT 1 27-MAR-24 8P37 0 JRNL AUTH A.HERNANDEZ-GOMEZ,I.IRISARRI,D.FERNANDEZ-JUSTEL,R.PELAEZ, JRNL AUTH 2 A.JIMENEZ,J.L.REVUELTA,M.BALSERA,R.M.BUEY JRNL TITL GUAB3, AN OVERLOOKED ENZYME IN CYANOBACTERIA'S TOOLBOX THAT JRNL TITL 2 SHEDS LIGHT ON IMP DEHYDROGENASE EVOLUTION. JRNL REF STRUCTURE V. 31 1526 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37875114 JRNL DOI 10.1016/J.STR.2023.09.014 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 76.7 REMARK 3 NUMBER OF REFLECTIONS : 77746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3882 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2323 REMARK 3 BIN FREE R VALUE : 0.2395 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 65 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26980 REMARK 3 B22 (A**2) : 0.26980 REMARK 3 B33 (A**2) : -0.53960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.150 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.053 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.052 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.056 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.050 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5759 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10490 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1737 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 891 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5759 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 412 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6667 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.29 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.90 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.46 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|30 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.9054 -6.6618 -30.9398 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1168 REMARK 3 T33: 0.1245 T12: 0.0046 REMARK 3 T13: 0.0096 T23: -0.003 REMARK 3 L TENSOR REMARK 3 L11: 0.237 L22: 1.6426 REMARK 3 L33: 0.1897 L12: 0.0973 REMARK 3 L13: 0.1055 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.1163 S13: -0.0091 REMARK 3 S21: -0.1163 S22: -0.0606 S23: 0.0221 REMARK 3 S31: -0.0091 S32: 0.0221 S33: 0.0323 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|31 - A|115 } REMARK 3 ORIGIN FOR THE GROUP (A): 31.9653 -10.0643 -9.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1056 REMARK 3 T33: 0.1062 T12: 0.0043 REMARK 3 T13: -0.0056 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.6599 L22: 0.8772 REMARK 3 L33: 0.6534 L12: -0.0006 REMARK 3 L13: 0.0968 L23: 0.1286 REMARK 3 S TENSOR REMARK 3 S11: -0.006 S12: 0.1009 S13: -0.0262 REMARK 3 S21: 0.1009 S22: 0.0224 S23: 0.0642 REMARK 3 S31: -0.0262 S32: 0.0642 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|116 - A|138 } REMARK 3 ORIGIN FOR THE GROUP (A): 42.788 -12.0666 -11.6125 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.1269 REMARK 3 T33: 0.1594 T12: 0.0021 REMARK 3 T13: -0.0073 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.7211 L22: 0.8406 REMARK 3 L33: 0.6714 L12: -0.3581 REMARK 3 L13: 0.4573 L23: -0.3444 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.0699 S13: -0.0077 REMARK 3 S21: 0.0699 S22: -0.0435 S23: 0.0987 REMARK 3 S31: -0.0077 S32: 0.0987 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|139 - A|170 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.8788 -1.9702 -21.6978 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.143 REMARK 3 T33: 0.1745 T12: -0.003 REMARK 3 T13: 0.0169 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.292 L22: 1.8795 REMARK 3 L33: 0.4622 L12: -0.1804 REMARK 3 L13: 0.2186 L23: -0.7018 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0806 S13: -0.0301 REMARK 3 S21: -0.0806 S22: -0.1323 S23: 0.1026 REMARK 3 S31: -0.0301 S32: 0.1026 S33: 0.0799 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|171 - A|313 } REMARK 3 ORIGIN FOR THE GROUP (A): 27.2853 -5.5859 -23.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0971 REMARK 3 T33: 0.1004 T12: 0.0011 REMARK 3 T13: 0.0127 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.3646 L22: 0.6018 REMARK 3 L33: 0.3683 L12: -0.0375 REMARK 3 L13: 0.0893 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0476 S13: -0.0081 REMARK 3 S21: -0.0476 S22: 0.0018 S23: 0.0456 REMARK 3 S31: -0.0081 S32: 0.0456 S33: 0.007 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|314 - A|361 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.3688 -21.1154 -15.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0969 REMARK 3 T33: 0.1046 T12: 0.0053 REMARK 3 T13: 0.0075 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.4996 L22: 0.6852 REMARK 3 L33: 0.4299 L12: 0.1723 REMARK 3 L13: 0.2913 L23: 0.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.0532 S13: 0.0406 REMARK 3 S21: 0.0532 S22: -0.005 S23: -0.0376 REMARK 3 S31: 0.0406 S32: -0.0376 S33: -0.0266 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|362 - A|386 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.6017 -12.8264 -16.2999 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.1276 REMARK 3 T33: 0.132 T12: -0.0048 REMARK 3 T13: 0.0059 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.4318 L22: 0.2072 REMARK 3 L33: 1.2747 L12: 0.1158 REMARK 3 L13: -0.7506 L23: -0.2008 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: 0.0519 S13: -0.1068 REMARK 3 S21: 0.0519 S22: -0.0492 S23: 0.0491 REMARK 3 S31: -0.1068 S32: 0.0491 S33: 0.0094 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979181423454 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20220820 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77746 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.219 REMARK 200 RESOLUTION RANGE LOW (A) : 39.905 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 12.82 REMARK 200 R MERGE (I) : 0.08770 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 39.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.61 REMARK 200 R MERGE FOR SHELL (I) : 0.04280 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 53.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SYNGUAB3-C222S CRYSTALS WERE GROWN IN REMARK 280 THE PRESENCE OF IMP AND NAD+ IN MOTHER LIQUOR FROM THE CONDITION REMARK 280 2-48 OF THE COMMERCIAL SCREEN MORPHEUS (MOLECULAR DIMENSIONS), REMARK 280 WHICH CONSISTS OF AN AMINO ACID MIXTURE (0.02M DL-GLUTAMIC ACID REMARK 280 MONOHYDRATE, 0.02M DL-ALANINE, 0.02M GLYCINE, 0.02M DL-LYSINE REMARK 280 MONOHYDROCHLORIDE, AND 0.02M DL-SERINE, A PRECIPITANT MIX (25% REMARK 280 (V/V) PEG 500 MME AND 12.5 % (W/V) PEG 20000), AND 0.1M OF A REMARK 280 BUFFER SYSTEM (TRIS-BASE, BICINE) ADJUSTED AT PH 8.5. INITIAL REMARK 280 CONDITIONS: BUFFER: 10 MM TRISHCL, PH 8.0 PROTEIN CONCENTRATION = REMARK 280 15 MG/ML SUBSTRATE CONCENTRATION: 3 MM NAD + 3 MM IMP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.43350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.43350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.05950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.43350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.43350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.05950 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 56.43350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.43350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 27.05950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 56.43350 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 56.43350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 27.05950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 VAL A 174 CG1 CG2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 LYS A 379 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2A NAD A 402 O HOH A 508 1.56 REMARK 500 O HOH A 747 O HOH A 755 1.95 REMARK 500 O HOH A 521 O HOH A 546 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 545 O HOH A 590 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 -159.44 -109.10 REMARK 500 LEU A 309 81.15 -155.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 8P37 A 1 387 UNP P73853 P73853_SYNY3 1 387 SEQADV 8P37 GLY A -2 UNP P73853 EXPRESSION TAG SEQADV 8P37 SER A -1 UNP P73853 EXPRESSION TAG SEQADV 8P37 HIS A 0 UNP P73853 EXPRESSION TAG SEQADV 8P37 SER A 222 UNP P73853 CYS 222 ENGINEERED MUTATION SEQRES 1 A 390 GLY SER HIS MET ASN ILE THR ILE GLY ARG GLY LYS THR SEQRES 2 A 390 ALA ARG ARG ALA TYR GLY ILE ASP GLU ILE ALA LEU VAL SEQRES 3 A 390 PRO GLY VAL ARG THR LEU ASP PRO ALA LEU ALA ASP THR SEQRES 4 A 390 ARG TRP LYS VAL GLY ALA ILE GLU ARG GLU ILE PRO ILE SEQRES 5 A 390 ILE ALA SER ALA MET ASP GLY VAL VAL ASP SER ARG MET SEQRES 6 A 390 ALA VAL LEU LEU SER GLU LEU GLY ALA LEU GLY VAL VAL SEQRES 7 A 390 ASN LEU GLU GLY ILE GLN THR ARG TYR GLU ASP PRO ASN SEQRES 8 A 390 PRO ILE LEU ASP ARG ILE ALA SER VAL GLY LYS THR GLU SEQRES 9 A 390 PHE VAL GLY LEU MET GLN GLU LEU TYR ALA GLU PRO ILE SEQRES 10 A 390 LYS PRO GLU LEU ILE THR LYS ARG ILE GLN GLU ILE GLN SEQRES 11 A 390 ALA ALA GLY GLY ILE ALA ALA VAL SER LEU THR PRO VAL SEQRES 12 A 390 GLY ALA SER LYS TYR ALA SER THR VAL ALA GLU ALA GLY SEQRES 13 A 390 ALA ASP LEU LEU PHE ILE GLN ALA THR VAL VAL SER THR SEQRES 14 A 390 ALA HIS LEU SER PRO GLU SER VAL GLU SER LEU ASP LEU SEQRES 15 A 390 VAL LYS LEU CYS GLN GLU MET PRO MET PRO VAL VAL LEU SEQRES 16 A 390 GLY ASN CYS VAL THR TYR GLU VAL SER LEU GLU LEU MET SEQRES 17 A 390 ARG ALA GLY ALA ALA ALA VAL LEU VAL GLY ILE GLY PRO SEQRES 18 A 390 GLY ALA ALA SER THR SER ARG GLY VAL LEU GLY VAL GLY SEQRES 19 A 390 VAL PRO GLN PRO THR ALA ILE ALA ASP CYS ALA ALA ALA SEQRES 20 A 390 ARG ASP ASP TYR LEU GLN GLU THR GLY ARG TYR VAL PRO SEQRES 21 A 390 VAL ILE ALA ASP GLY GLY ILE ILE THR GLY GLY ASP ILE SEQRES 22 A 390 CYS LYS CYS ILE ALA CYS GLY ALA ASP ALA VAL MET ILE SEQRES 23 A 390 GLY SER PRO ILE ALA ARG ALA ALA GLU ALA PRO GLY ARG SEQRES 24 A 390 GLY PHE HIS TRP GLY MET ALA THR PRO SER PRO VAL LEU SEQRES 25 A 390 PRO ARG GLY THR ARG ILE ASN VAL GLY THR THR GLY THR SEQRES 26 A 390 ILE ARG GLU ILE LEU VAL GLY PRO ALA LYS LEU ASP ASP SEQRES 27 A 390 GLY THR HIS ASN LEU LEU GLY ALA ILE LYS THR SER MET SEQRES 28 A 390 GLY THR LEU GLY ALA LYS ASP MET LYS GLU MET GLN GLN SEQRES 29 A 390 VAL ASP VAL VAL ILE ALA PRO SER LEU LEU THR GLU GLY SEQRES 30 A 390 LYS VAL TYR GLN LYS ALA GLN GLN LEU GLY MET GLY LYS HET XMP A 401 36 HET NAD A 402 70 HETNAM XMP XANTHOSINE-5'-MONOPHOSPHATE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETSYN XMP 5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE FORMUL 2 XMP C10 H14 N4 O9 P 1+ FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *331(H2 O) HELIX 1 AA1 GLY A 16 ASP A 18 5 3 HELIX 2 AA2 ASP A 30 ALA A 34 5 5 HELIX 3 AA3 ASP A 59 GLY A 70 1 12 HELIX 4 AA4 GLY A 79 TYR A 84 1 6 HELIX 5 AA5 PRO A 87 VAL A 97 1 11 HELIX 6 AA6 GLU A 101 TYR A 110 1 10 HELIX 7 AA7 LYS A 115 ALA A 129 1 15 HELIX 8 AA8 THR A 138 GLY A 153 1 16 HELIX 9 AA9 ASP A 178 MET A 186 1 9 HELIX 10 AB1 THR A 197 GLY A 208 1 12 HELIX 11 AB2 THR A 223 GLY A 229 1 7 HELIX 12 AB3 PRO A 233 GLY A 253 1 21 HELIX 13 AB4 THR A 266 CYS A 276 1 11 HELIX 14 AB5 GLY A 284 ARG A 289 1 6 HELIX 15 AB6 THR A 322 GLY A 329 1 8 HELIX 16 AB7 ASN A 339 GLY A 352 1 14 HELIX 17 AB8 ASP A 355 GLN A 360 1 6 HELIX 18 AB9 LYS A 375 GLN A 382 1 8 SHEET 1 AA1 2 ILE A 3 GLY A 6 0 SHEET 2 AA1 2 LYS A 9 ALA A 11 -1 O ALA A 11 N ILE A 3 SHEET 1 AA2 2 ILE A 20 VAL A 23 0 SHEET 2 AA2 2 ASP A 363 ILE A 366 -1 O ASP A 363 N VAL A 23 SHEET 1 AA3 2 TRP A 38 VAL A 40 0 SHEET 2 AA3 2 ILE A 43 ARG A 45 -1 O ARG A 45 N TRP A 38 SHEET 1 AA4 9 ILE A 49 ALA A 51 0 SHEET 2 AA4 9 LEU A 72 ASN A 76 1 O LEU A 72 N ALA A 51 SHEET 3 AA4 9 ALA A 134 LEU A 137 1 O SER A 136 N VAL A 75 SHEET 4 AA4 9 LEU A 156 GLN A 160 1 O PHE A 158 N VAL A 135 SHEET 5 AA4 9 VAL A 190 CYS A 195 1 O VAL A 191 N ILE A 159 SHEET 6 AA4 9 ALA A 211 VAL A 214 1 O ALA A 211 N LEU A 192 SHEET 7 AA4 9 VAL A 258 ASP A 261 1 O ILE A 259 N VAL A 214 SHEET 8 AA4 9 ALA A 280 ILE A 283 1 O MET A 282 N ALA A 260 SHEET 9 AA4 9 ILE A 49 ALA A 51 1 N ILE A 50 O VAL A 281 SHEET 1 AA5 2 PHE A 298 TRP A 300 0 SHEET 2 AA5 2 ARG A 314 ASN A 316 -1 O ILE A 315 N HIS A 299 CISPEP 1 GLY A 193 ASN A 194 0 16.98 CISPEP 2 GLY A 329 PRO A 330 0 0.93 CRYST1 112.867 112.867 54.119 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018478 0.00000