HEADER VIRAL PROTEIN 23-MAY-23 8P57 TITLE CRYSTAL STRUCTURE OF THE MAIN PROTEASE (3CLPRO/MPRO) OF SARS-COV-2 TITLE 2 OBTAINED IN PRESENCE OF 75 MICROMOLAR X77. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,P.STORICI REVDAT 1 01-MAY-24 8P57 0 JRNL AUTH S.ALBANI,E.COSTANZI,G.L.HOANG,M.KUZIKOV,M.FRINGS,N.ANSARI, JRNL AUTH 2 N.DEMITRI,T.T.NGUYEN,V.RIZZI,J.B.SCHULZ,C.BOLM,A.ZALIANI, JRNL AUTH 3 P.CARLONI,P.STORICI,G.ROSSETTI JRNL TITL UNEXPECTED SINGLE-LIGAND OCCUPANCY AND NEGATIVE JRNL TITL 2 COOPERATIVITY IN THE SARS-COV-2 MAIN PROTEASE. JRNL REF J.CHEM.INF.MODEL. V. 64 892 2024 JRNL REFN ESSN 1549-960X JRNL PMID 38051605 JRNL DOI 10.1021/ACS.JCIM.3C01497 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 94917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5000 - 4.9700 1.00 3235 176 0.1821 0.1914 REMARK 3 2 4.9700 - 3.9500 1.00 3084 184 0.1324 0.1391 REMARK 3 3 3.9500 - 3.4500 1.00 3076 156 0.1490 0.1695 REMARK 3 4 3.4500 - 3.1300 1.00 3061 156 0.1607 0.1593 REMARK 3 5 3.1300 - 2.9100 1.00 3017 163 0.1572 0.1775 REMARK 3 6 2.9100 - 2.7400 1.00 3035 165 0.1551 0.1663 REMARK 3 7 2.7400 - 2.6000 1.00 3015 153 0.1568 0.1659 REMARK 3 8 2.6000 - 2.4900 1.00 3018 172 0.1601 0.1942 REMARK 3 9 2.4900 - 2.3900 1.00 2996 154 0.1577 0.1737 REMARK 3 10 2.3900 - 2.3100 1.00 2980 192 0.1544 0.1693 REMARK 3 11 2.3100 - 2.2400 1.00 2991 171 0.1551 0.1860 REMARK 3 12 2.2400 - 2.1700 1.00 2974 174 0.1534 0.1730 REMARK 3 13 2.1700 - 2.1100 1.00 2974 157 0.1500 0.2113 REMARK 3 14 2.1100 - 2.0600 1.00 2990 182 0.1578 0.1642 REMARK 3 15 2.0600 - 2.0200 1.00 2970 175 0.1696 0.1836 REMARK 3 16 2.0200 - 1.9700 1.00 2984 160 0.1714 0.1984 REMARK 3 17 1.9700 - 1.9300 1.00 2992 147 0.1916 0.2228 REMARK 3 18 1.9300 - 1.9000 1.00 2987 161 0.1882 0.2028 REMARK 3 19 1.9000 - 1.8600 1.00 2979 150 0.1907 0.2138 REMARK 3 20 1.8600 - 1.8300 1.00 2948 184 0.1977 0.2245 REMARK 3 21 1.8300 - 1.8000 1.00 2986 152 0.1948 0.2434 REMARK 3 22 1.8000 - 1.7700 1.00 2982 147 0.2029 0.2138 REMARK 3 23 1.7700 - 1.7500 1.00 2997 150 0.2111 0.2287 REMARK 3 24 1.7500 - 1.7200 1.00 2999 140 0.2178 0.2682 REMARK 3 25 1.7200 - 1.7000 1.00 3012 142 0.2264 0.2055 REMARK 3 26 1.7000 - 1.6800 1.00 2942 169 0.2284 0.2411 REMARK 3 27 1.6800 - 1.6600 1.00 2938 169 0.2485 0.2276 REMARK 3 28 1.6600 - 1.6400 1.00 2976 159 0.2723 0.2950 REMARK 3 29 1.6400 - 1.6200 1.00 2968 144 0.2842 0.3402 REMARK 3 30 1.6200 - 1.6000 1.00 2973 134 0.3070 0.3459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.774 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4922 REMARK 3 ANGLE : 1.124 6683 REMARK 3 CHIRALITY : 0.061 749 REMARK 3 PLANARITY : 0.008 869 REMARK 3 DIHEDRAL : 14.067 1776 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0817 -7.4310 -18.3507 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1745 REMARK 3 T33: 0.1708 T12: 0.0276 REMARK 3 T13: -0.0014 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.4518 L22: 0.6289 REMARK 3 L33: 1.5381 L12: -0.2692 REMARK 3 L13: -0.3497 L23: -0.0545 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: -0.1102 S13: -0.0842 REMARK 3 S21: 0.0224 S22: -0.0182 S23: -0.0351 REMARK 3 S31: 0.0264 S32: 0.1931 S33: 0.0562 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8302 -6.2002 -24.8793 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.2703 REMARK 3 T33: 0.2124 T12: 0.0498 REMARK 3 T13: 0.0088 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.2884 L22: 0.2454 REMARK 3 L33: 2.4106 L12: 0.2565 REMARK 3 L13: -0.9653 L23: -0.2635 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.1703 S13: 0.0638 REMARK 3 S21: 0.1034 S22: 0.0009 S23: -0.0339 REMARK 3 S31: -0.1915 S32: 0.2510 S33: -0.0208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6451 -16.4712 -21.1497 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.1434 REMARK 3 T33: 0.2097 T12: 0.0496 REMARK 3 T13: 0.0432 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.9308 L22: 1.0088 REMARK 3 L33: 2.6509 L12: -0.6651 REMARK 3 L13: 1.2423 L23: -0.8244 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.0567 S13: -0.2355 REMARK 3 S21: 0.0215 S22: -0.0358 S23: -0.0316 REMARK 3 S31: 0.2138 S32: 0.2107 S33: 0.0313 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2841 -5.1599 -23.1419 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1175 REMARK 3 T33: 0.1580 T12: 0.0090 REMARK 3 T13: -0.0012 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.3045 L22: 0.8683 REMARK 3 L33: 2.1274 L12: -0.2096 REMARK 3 L13: -0.3956 L23: 0.3458 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0142 S13: 0.0240 REMARK 3 S21: 0.0192 S22: -0.0301 S23: -0.0761 REMARK 3 S31: -0.0058 S32: 0.0662 S33: 0.0340 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4745 -1.6923 -35.2653 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.2736 REMARK 3 T33: 0.2243 T12: 0.0143 REMARK 3 T13: 0.0018 T23: 0.0693 REMARK 3 L TENSOR REMARK 3 L11: 2.3395 L22: 0.5929 REMARK 3 L33: 0.8784 L12: 0.0810 REMARK 3 L13: -0.0963 L23: 0.0991 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.6371 S13: 0.3476 REMARK 3 S21: -0.0530 S22: -0.0258 S23: -0.0875 REMARK 3 S31: -0.0984 S32: 0.0739 S33: -0.0105 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0095 -7.8374 -32.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.1836 REMARK 3 T33: 0.1579 T12: 0.0056 REMARK 3 T13: -0.0033 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.5598 L22: 1.1121 REMARK 3 L33: 1.4133 L12: -0.3703 REMARK 3 L13: 0.6278 L23: -0.1371 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.1292 S13: -0.0690 REMARK 3 S21: 0.0609 S22: 0.0252 S23: 0.0700 REMARK 3 S31: -0.0154 S32: -0.0546 S33: -0.0212 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2070 -10.8169 -1.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.1285 REMARK 3 T33: 0.1709 T12: 0.0067 REMARK 3 T13: -0.0021 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.4747 L22: 0.9684 REMARK 3 L33: 1.8005 L12: -0.5140 REMARK 3 L13: -0.3843 L23: -0.3020 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: -0.1128 S13: -0.1634 REMARK 3 S21: -0.0795 S22: -0.0523 S23: 0.0459 REMARK 3 S31: 0.3115 S32: 0.1314 S33: 0.0662 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3259 -15.1752 10.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.3195 T22: 0.4246 REMARK 3 T33: 0.4886 T12: -0.1215 REMARK 3 T13: 0.0329 T23: 0.1257 REMARK 3 L TENSOR REMARK 3 L11: 2.5849 L22: 3.4673 REMARK 3 L33: 4.4082 L12: -0.8878 REMARK 3 L13: 0.7301 L23: 0.3137 REMARK 3 S TENSOR REMARK 3 S11: -0.1519 S12: -0.4366 S13: -0.7212 REMARK 3 S21: 0.0720 S22: -0.0627 S23: 0.7151 REMARK 3 S31: 0.7401 S32: -0.5576 S33: -0.2303 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9840 -18.6916 10.3306 REMARK 3 T TENSOR REMARK 3 T11: 0.3376 T22: 0.2029 REMARK 3 T33: 0.2844 T12: 0.0290 REMARK 3 T13: 0.0057 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 1.8870 L22: 1.7532 REMARK 3 L33: 1.8767 L12: -0.5743 REMARK 3 L13: 0.4240 L23: -0.2189 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.2626 S13: -0.5728 REMARK 3 S21: 0.0586 S22: 0.0413 S23: 0.1229 REMARK 3 S31: 0.5975 S32: 0.0545 S33: -0.0682 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4605 -3.7735 3.8250 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.2203 REMARK 3 T33: 0.1897 T12: 0.0215 REMARK 3 T13: 0.0098 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 2.1585 L22: 1.2847 REMARK 3 L33: 2.4928 L12: -0.7826 REMARK 3 L13: -0.0694 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.1564 S12: -0.3196 S13: -0.0351 REMARK 3 S21: 0.1118 S22: 0.0905 S23: -0.0357 REMARK 3 S31: -0.0796 S32: 0.2712 S33: 0.0810 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4477 -2.8276 -4.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1136 REMARK 3 T33: 0.1375 T12: -0.0037 REMARK 3 T13: -0.0003 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.4278 L22: 1.1951 REMARK 3 L33: 2.0400 L12: -0.4900 REMARK 3 L13: -0.3304 L23: -0.1793 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: 0.0481 S13: -0.0652 REMARK 3 S21: -0.0708 S22: -0.0425 S23: 0.0146 REMARK 3 S31: 0.0662 S32: -0.1482 S33: -0.0365 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8375 20.6892 -21.1137 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.1364 REMARK 3 T33: 0.1837 T12: -0.0006 REMARK 3 T13: 0.0837 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.7533 L22: 1.7021 REMARK 3 L33: 0.7137 L12: 0.1635 REMARK 3 L13: 0.3084 L23: -0.9240 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.1238 S13: 0.1010 REMARK 3 S21: -0.0697 S22: -0.0519 S23: -0.2973 REMARK 3 S31: -0.3327 S32: 0.0454 S33: -0.0254 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1825 18.8488 -15.8518 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.1691 REMARK 3 T33: 0.2023 T12: 0.0081 REMARK 3 T13: 0.0615 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.6419 L22: 2.9931 REMARK 3 L33: 3.2865 L12: 0.2369 REMARK 3 L13: -0.6508 L23: -0.0883 REMARK 3 S TENSOR REMARK 3 S11: 0.1702 S12: 0.0793 S13: 0.1814 REMARK 3 S21: 0.0632 S22: 0.0701 S23: 0.0477 REMARK 3 S31: -0.6588 S32: 0.0016 S33: -0.1878 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 302 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4678 3.4850 -9.7988 REMARK 3 T TENSOR REMARK 3 T11: 0.8710 T22: 0.8712 REMARK 3 T33: 0.9489 T12: 0.0306 REMARK 3 T13: 0.0443 T23: -0.0850 REMARK 3 L TENSOR REMARK 3 L11: 0.0072 L22: 0.0428 REMARK 3 L33: 0.0186 L12: 0.0055 REMARK 3 L13: -0.0028 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.1218 S12: -0.0431 S13: 0.0432 REMARK 3 S21: -0.0767 S22: -0.1133 S23: 0.0726 REMARK 3 S31: -0.0667 S32: -0.0156 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 104.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M DL-GLUTAMIC ACID MONOHYDRATE, REMARK 280 0.1M DL-ALANINE 0.1M GLYCINE 0.1M DL-LYSINE MONOHYDROCHLORIDE REMARK 280 0.1M DL-SERINE, 0.1M HEPES/MOPS PH 7.5, 20% V/V ETHYLENE GLYCOL REMARK 280 10 % W/V PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.32350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.41450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.32350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.41450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -130.65 54.26 REMARK 500 ASN A 51 59.86 -141.67 REMARK 500 ASN A 84 -124.38 51.86 REMARK 500 ASP B 33 -132.80 52.49 REMARK 500 ASN B 51 70.29 -156.78 REMARK 500 ASN B 84 -125.91 52.67 REMARK 500 TYR B 154 -103.34 60.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 860 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 861 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 863 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 860 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 510 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 509 O REMARK 620 2 ASP B 33 OD2 100.3 REMARK 620 3 TYR B 101 OH 83.6 123.4 REMARK 620 4 HOH B 662 O 129.8 127.4 82.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 221 O REMARK 620 2 ASN B 221 OD1 73.3 REMARK 620 3 PHE B 223 O 116.6 94.1 REMARK 620 4 ASP B 263 O 152.2 117.0 89.4 REMARK 620 5 ASP B 263 OD1 97.8 170.5 92.6 69.6 REMARK 620 6 HOH B 616 O 81.2 94.7 161.8 72.5 80.7 REMARK 620 N 1 2 3 4 5 DBREF 8P57 A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 8P57 B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET CL A 401 1 HET X77 A 402 66 HET EDO B 501 10 HET EDO B 502 10 HET EDO B 503 10 HET EDO B 504 10 HET EDO B 505 10 HET EDO B 506 10 HET EDO B 507 10 HET DMS B 508 10 HET NA B 509 1 HET NA B 510 1 HETNAM CL CHLORIDE ION HETNAM X77 N-(4-TERT-BUTYLPHENYL)-N-[(1R)-2-(CYCLOHEXYLAMINO)-2- HETNAM 2 X77 OXO-1-(PYRIDIN-3-YL)ETHYL]-1H-IMIDAZOLE-4-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL CL 1- FORMUL 4 X77 C27 H33 N5 O2 FORMUL 5 EDO 7(C2 H6 O2) FORMUL 12 DMS C2 H6 O S FORMUL 13 NA 2(NA 1+) FORMUL 15 HOH *625(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 THR A 45 MET A 49 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 SER A 62 HIS A 64 5 3 HELIX 6 AA6 ILE A 152 CYS A 156 5 5 HELIX 7 AA7 ILE A 200 ASN A 214 1 15 HELIX 8 AA8 THR A 226 MET A 235 1 10 HELIX 9 AA9 LYS A 236 ASN A 238 5 3 HELIX 10 AB1 THR A 243 LEU A 250 1 8 HELIX 11 AB2 LEU A 250 GLY A 258 1 9 HELIX 12 AB3 ALA A 260 GLY A 275 1 16 HELIX 13 AB4 THR A 292 CYS A 300 1 9 HELIX 14 AB5 SER B 10 GLY B 15 1 6 HELIX 15 AB6 HIS B 41 CYS B 44 5 4 HELIX 16 AB7 THR B 45 ASN B 51 1 7 HELIX 17 AB8 ASN B 53 LYS B 61 1 9 HELIX 18 AB9 SER B 62 PHE B 66 5 5 HELIX 19 AC1 ILE B 200 ASN B 214 1 15 HELIX 20 AC2 THR B 226 TYR B 237 1 12 HELIX 21 AC3 THR B 243 LEU B 250 1 8 HELIX 22 AC4 LEU B 250 GLY B 258 1 9 HELIX 23 AC5 ALA B 260 GLY B 275 1 16 HELIX 24 AC6 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASN A 151 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK O HOH A 509 NA NA B 510 2555 1555 2.67 LINK OD2 ASP B 33 NA NA B 510 1555 1555 2.38 LINK OH TYR B 101 NA NA B 510 1555 1555 2.50 LINK O ASN B 221 NA NA B 509 1555 1555 2.61 LINK OD1 ASN B 221 NA NA B 509 1555 1555 2.42 LINK O PHE B 223 NA NA B 509 1555 1555 2.26 LINK O ASP B 263 NA NA B 509 1555 1555 3.10 LINK OD1 ASP B 263 NA NA B 509 1555 1555 2.14 LINK NA NA B 509 O HOH B 616 1555 1555 2.30 LINK NA NA B 510 O HOH B 662 1555 1555 2.59 CRYST1 67.660 100.829 104.647 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009556 0.00000