HEADER TRANSFERASE 24-MAY-23 8P5J TITLE KINASE DOMAIN OF MUTANT HUMAN ULK1 IN COMPLEX WITH COMPOUND WZ4003 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ULK1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN 1 HOMOLOG,ATG1,HATG1,UNC-51-LIKE COMPND 5 KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ULK1, KIAA0722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, UNC-LIKE 1 KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.BATTISTA,M.S.SEMRAU,A.HEROUX,G.LOLLI,P.STORICI REVDAT 1 05-JUN-24 8P5J 0 JRNL AUTH T.BATTISTA,M.S.SEMRAU,G.LOLLI,P.STORICI JRNL TITL CRYSTAL STRUCTURES OF ULK1 IN COMPLEX WITH KCGS COMPOUNDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.881 REMARK 3 FREE R VALUE TEST SET COUNT : 2331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39300 REMARK 3 B22 (A**2) : -0.02900 REMARK 3 B33 (A**2) : -0.36400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4518 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4395 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6105 ; 1.525 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10117 ; 0.502 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 6.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;11.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;15.830 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 670 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5208 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1044 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 822 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 74 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2236 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2162 ; 3.997 ; 4.473 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2162 ; 3.987 ; 4.473 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2700 ; 5.295 ; 8.012 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2701 ; 5.294 ; 8.013 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2356 ; 5.668 ; 5.113 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2357 ; 5.668 ; 5.113 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3396 ; 8.439 ; 9.092 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3397 ; 8.438 ; 9.092 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 279 NULL REMARK 3 1 A 8 A 279 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8P5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.164 REMARK 200 RESOLUTION RANGE LOW (A) : 63.281 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3-0.8 M NAACETATE PH 6, 20-26% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.45000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 150 REMARK 465 GLY A 151 REMARK 465 ARG A 152 REMARK 465 ALA A 280 REMARK 465 SER A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 150 REMARK 465 GLY B 151 REMARK 465 ARG B 152 REMARK 465 ARG B 153 REMARK 465 ALA B 280 REMARK 465 SER B 281 REMARK 465 PRO B 282 REMARK 465 SER B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 136 H ASP B 138 1.22 REMARK 500 HD1 HIS A 136 H ASP A 138 1.22 REMARK 500 HD1 HIS A 72 H ASN A 74 1.23 REMARK 500 HH11 ARG A 153 HG SER A 158 1.25 REMARK 500 HD1 HIS B 72 H ASN B 74 1.25 REMARK 500 HZ3 LYS B 46 O HOH B 401 1.55 REMARK 500 O HOH A 521 O HOH A 530 1.89 REMARK 500 O HOH A 488 O HOH B 516 2.15 REMARK 500 O HOH A 512 O HOH A 530 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 108 -51.71 77.27 REMARK 500 ASP A 138 43.39 -145.79 REMARK 500 ASP A 165 69.92 71.25 REMARK 500 ASP A 199 -159.65 -138.00 REMARK 500 LEU A 259 54.05 -98.14 REMARK 500 ARG B 108 -56.56 75.24 REMARK 500 ASP B 138 43.60 -145.80 REMARK 500 PRO B 156 -36.65 -36.25 REMARK 500 ASP B 165 70.61 71.21 REMARK 500 ASP B 199 -159.78 -136.84 REMARK 500 LEU B 259 56.36 -95.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 160 0.09 SIDE CHAIN REMARK 500 ARG B 127 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 174 OG REMARK 620 2 TYR B 171 OH 111.5 REMARK 620 3 HOH B 421 O 109.9 134.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 191 OE2 REMARK 620 2 ASP A 199 OD1 149.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 191 OE2 REMARK 620 2 ASP B 199 OD1 147.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8P5G RELATED DB: PDB DBREF 8P5J A 1 283 UNP O75385 ULK1_HUMAN 1 283 DBREF 8P5J B 1 283 UNP O75385 ULK1_HUMAN 1 283 SEQADV 8P5J SER A 0 UNP O75385 EXPRESSION TAG SEQADV 8P5J ALA A 245 UNP O75385 ARG 245 ENGINEERED MUTATION SEQADV 8P5J ALA A 246 UNP O75385 GLU 246 ENGINEERED MUTATION SEQADV 8P5J SER B 0 UNP O75385 EXPRESSION TAG SEQADV 8P5J ALA B 245 UNP O75385 ARG 245 ENGINEERED MUTATION SEQADV 8P5J ALA B 246 UNP O75385 GLU 246 ENGINEERED MUTATION SEQRES 1 A 284 SER MET GLU PRO GLY ARG GLY GLY THR GLU THR VAL GLY SEQRES 2 A 284 LYS PHE GLU PHE SER ARG LYS ASP LEU ILE GLY HIS GLY SEQRES 3 A 284 ALA PHE ALA VAL VAL PHE LYS GLY ARG HIS ARG GLU LYS SEQRES 4 A 284 HIS ASP LEU GLU VAL ALA VAL LYS CYS ILE ASN LYS LYS SEQRES 5 A 284 ASN LEU ALA LYS SER GLN THR LEU LEU GLY LYS GLU ILE SEQRES 6 A 284 LYS ILE LEU LYS GLU LEU LYS HIS GLU ASN ILE VAL ALA SEQRES 7 A 284 LEU TYR ASP PHE GLN GLU MET ALA ASN SER VAL TYR LEU SEQRES 8 A 284 VAL MET GLU TYR CYS ASN GLY GLY ASP LEU ALA ASP TYR SEQRES 9 A 284 LEU HIS ALA MET ARG THR LEU SER GLU ASP THR ILE ARG SEQRES 10 A 284 LEU PHE LEU GLN GLN ILE ALA GLY ALA MET ARG LEU LEU SEQRES 11 A 284 HIS SER LYS GLY ILE ILE HIS ARG ASP LEU LYS PRO GLN SEQRES 12 A 284 ASN ILE LEU LEU SER ASN PRO ALA GLY ARG ARG ALA ASN SEQRES 13 A 284 PRO ASN SER ILE ARG VAL LYS ILE ALA ASP PHE GLY PHE SEQRES 14 A 284 ALA ARG TYR LEU GLN SER ASN MET MET ALA ALA TPO LEU SEQRES 15 A 284 CYS GLY SER PRO MET TYR MET ALA PRO GLU VAL ILE MET SEQRES 16 A 284 SER GLN HIS TYR ASP GLY LYS ALA ASP LEU TRP SER ILE SEQRES 17 A 284 GLY THR ILE VAL TYR GLN CYS LEU THR GLY LYS ALA PRO SEQRES 18 A 284 PHE GLN ALA SER SER PRO GLN ASP LEU ARG LEU PHE TYR SEQRES 19 A 284 GLU LYS ASN LYS THR LEU VAL PRO THR ILE PRO ALA ALA SEQRES 20 A 284 THR SER ALA PRO LEU ARG GLN LEU LEU LEU ALA LEU LEU SEQRES 21 A 284 GLN ARG ASN HIS LYS ASP ARG MET ASP PHE ASP GLU PHE SEQRES 22 A 284 PHE HIS HIS PRO PHE LEU ASP ALA SER PRO SER SEQRES 1 B 284 SER MET GLU PRO GLY ARG GLY GLY THR GLU THR VAL GLY SEQRES 2 B 284 LYS PHE GLU PHE SER ARG LYS ASP LEU ILE GLY HIS GLY SEQRES 3 B 284 ALA PHE ALA VAL VAL PHE LYS GLY ARG HIS ARG GLU LYS SEQRES 4 B 284 HIS ASP LEU GLU VAL ALA VAL LYS CYS ILE ASN LYS LYS SEQRES 5 B 284 ASN LEU ALA LYS SER GLN THR LEU LEU GLY LYS GLU ILE SEQRES 6 B 284 LYS ILE LEU LYS GLU LEU LYS HIS GLU ASN ILE VAL ALA SEQRES 7 B 284 LEU TYR ASP PHE GLN GLU MET ALA ASN SER VAL TYR LEU SEQRES 8 B 284 VAL MET GLU TYR CYS ASN GLY GLY ASP LEU ALA ASP TYR SEQRES 9 B 284 LEU HIS ALA MET ARG THR LEU SER GLU ASP THR ILE ARG SEQRES 10 B 284 LEU PHE LEU GLN GLN ILE ALA GLY ALA MET ARG LEU LEU SEQRES 11 B 284 HIS SER LYS GLY ILE ILE HIS ARG ASP LEU LYS PRO GLN SEQRES 12 B 284 ASN ILE LEU LEU SER ASN PRO ALA GLY ARG ARG ALA ASN SEQRES 13 B 284 PRO ASN SER ILE ARG VAL LYS ILE ALA ASP PHE GLY PHE SEQRES 14 B 284 ALA ARG TYR LEU GLN SER ASN MET MET ALA ALA TPO LEU SEQRES 15 B 284 CYS GLY SER PRO MET TYR MET ALA PRO GLU VAL ILE MET SEQRES 16 B 284 SER GLN HIS TYR ASP GLY LYS ALA ASP LEU TRP SER ILE SEQRES 17 B 284 GLY THR ILE VAL TYR GLN CYS LEU THR GLY LYS ALA PRO SEQRES 18 B 284 PHE GLN ALA SER SER PRO GLN ASP LEU ARG LEU PHE TYR SEQRES 19 B 284 GLU LYS ASN LYS THR LEU VAL PRO THR ILE PRO ALA ALA SEQRES 20 B 284 THR SER ALA PRO LEU ARG GLN LEU LEU LEU ALA LEU LEU SEQRES 21 B 284 GLN ARG ASN HIS LYS ASP ARG MET ASP PHE ASP GLU PHE SEQRES 22 B 284 PHE HIS HIS PRO PHE LEU ASP ALA SER PRO SER MODRES 8P5J TPO A 180 THR MODIFIED RESIDUE MODRES 8P5J TPO B 180 THR MODIFIED RESIDUE HET TPO A 180 17 HET TPO B 180 17 HET WYT A 301 64 HET MG A 302 1 HET WYT B 301 64 HET MG B 302 1 HET NA B 303 1 HETNAM TPO PHOSPHOTHREONINE HETNAM WYT ~{N}-[3-[5-CHLORANYL-2-[[2-METHOXY-4-(4- HETNAM 2 WYT METHYLPIPERAZIN-1-YL)PHENYL]AMINO]PYRIMIDIN-4- HETNAM 3 WYT YL]OXYPHENYL]PROPANAMIDE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 WYT 2(C25 H29 CL N6 O3) FORMUL 4 MG 2(MG 2+) FORMUL 7 NA NA 1+ FORMUL 8 HOH *272(H2 O) HELIX 1 AA1 ASN A 49 LYS A 51 5 3 HELIX 2 AA2 ASN A 52 LYS A 68 1 17 HELIX 3 AA3 LEU A 100 ARG A 108 1 9 HELIX 4 AA4 SER A 111 GLY A 133 1 23 HELIX 5 AA5 LYS A 140 GLN A 142 5 3 HELIX 6 AA6 SER A 184 MET A 188 5 5 HELIX 7 AA7 ALA A 189 MET A 194 1 6 HELIX 8 AA8 GLY A 200 GLY A 217 1 18 HELIX 9 AA9 SER A 225 ASN A 236 1 12 HELIX 10 AB1 SER A 248 LEU A 259 1 12 HELIX 11 AB2 ASN A 262 ARG A 266 5 5 HELIX 12 AB3 ASP A 268 HIS A 274 1 7 HELIX 13 AB4 HIS A 275 ASP A 279 5 5 HELIX 14 AB5 ASN B 49 LYS B 51 5 3 HELIX 15 AB6 ASN B 52 LYS B 68 1 17 HELIX 16 AB7 ASP B 99 ARG B 108 1 10 HELIX 17 AB8 SER B 111 GLY B 133 1 23 HELIX 18 AB9 LYS B 140 GLN B 142 5 3 HELIX 19 AC1 ASN B 155 ILE B 159 5 5 HELIX 20 AC2 SER B 184 MET B 188 5 5 HELIX 21 AC3 ALA B 189 MET B 194 1 6 HELIX 22 AC4 GLY B 200 GLY B 217 1 18 HELIX 23 AC5 SER B 225 ASN B 236 1 12 HELIX 24 AC6 SER B 248 LEU B 259 1 12 HELIX 25 AC7 ASP B 268 HIS B 274 1 7 HELIX 26 AC8 HIS B 275 ASP B 279 5 5 SHEET 1 AA1 6 GLU A 9 VAL A 11 0 SHEET 2 AA1 6 PHE A 14 HIS A 24 -1 O PHE A 14 N VAL A 11 SHEET 3 AA1 6 VAL A 29 HIS A 35 -1 O VAL A 30 N ILE A 22 SHEET 4 AA1 6 GLU A 42 CYS A 47 -1 O VAL A 45 N PHE A 31 SHEET 5 AA1 6 VAL A 88 GLU A 93 -1 O MET A 92 N ALA A 44 SHEET 6 AA1 6 LEU A 78 GLU A 83 -1 N ASP A 80 O VAL A 91 SHEET 1 AA2 3 GLY A 98 ASP A 99 0 SHEET 2 AA2 3 ILE A 144 SER A 147 -1 O LEU A 146 N GLY A 98 SHEET 3 AA2 3 ARG A 160 ILE A 163 -1 O LYS A 162 N LEU A 145 SHEET 1 AA3 2 ILE A 134 ILE A 135 0 SHEET 2 AA3 2 ARG A 170 TYR A 171 -1 O ARG A 170 N ILE A 135 SHEET 1 AA4 6 GLU B 9 VAL B 11 0 SHEET 2 AA4 6 PHE B 14 HIS B 24 -1 O PHE B 14 N VAL B 11 SHEET 3 AA4 6 VAL B 29 HIS B 35 -1 O LYS B 32 N ASP B 20 SHEET 4 AA4 6 GLU B 42 CYS B 47 -1 O VAL B 45 N PHE B 31 SHEET 5 AA4 6 VAL B 88 GLU B 93 -1 O MET B 92 N ALA B 44 SHEET 6 AA4 6 LEU B 78 GLU B 83 -1 N ASP B 80 O VAL B 91 SHEET 1 AA5 2 ILE B 134 ILE B 135 0 SHEET 2 AA5 2 ARG B 170 TYR B 171 -1 O ARG B 170 N ILE B 135 SHEET 1 AA6 2 ILE B 144 SER B 147 0 SHEET 2 AA6 2 ARG B 160 ILE B 163 -1 O LYS B 162 N LEU B 145 LINK C ALA A 179 N TPO A 180 1555 1555 1.34 LINK C TPO A 180 N LEU A 181 1555 1555 1.33 LINK C ALA B 179 N TPO B 180 1555 1555 1.33 LINK C TPO B 180 N LEU B 181 1555 1555 1.32 LINK OG SER A 174 NA NA B 303 1555 1555 2.75 LINK OE2 GLU A 191 MG MG A 302 1555 1555 2.73 LINK OD1 ASP A 199 MG MG A 302 1555 1555 2.79 LINK OH TYR B 171 NA NA B 303 1555 1555 2.49 LINK OE2 GLU B 191 MG MG B 302 1555 1555 2.66 LINK OD1 ASP B 199 MG MG B 302 1555 1555 2.87 LINK NA NA B 303 O HOH B 421 1555 1555 2.63 CRYST1 84.090 96.090 108.900 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009183 0.00000