HEADER TRANSFERASE 24-MAY-23 8P5L TITLE KINASE DOMAIN OF MUTANT HUMAN ULK1 IN COMPLEX WITH COMPOUND MRT67307 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ULK1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN 1 HOMOLOG,ATG1,HATG1,UNC-51-LIKE COMPND 5 KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ULK1, KIAA0722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, UNC-LIKE 1 KINASE, TRANSFERASE, KCGS EXPDTA X-RAY DIFFRACTION AUTHOR T.BATTISTA,M.S.SEMRAU,A.HEROUX,G.LOLLI,P.STORICI REVDAT 1 05-JUN-24 8P5L 0 JRNL AUTH T.BATTISTA,M.S.SEMRAU,G.LOLLI,P.STORICI JRNL TITL CRYSTAL STRUCTURES OF ULK1 IN COMPLEX WITH KCGS COMPOUNDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 111.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 79997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.183 REMARK 3 FREE R VALUE TEST SET COUNT : 4146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 339 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23500 REMARK 3 B22 (A**2) : -0.23500 REMARK 3 B33 (A**2) : 0.76200 REMARK 3 B12 (A**2) : -0.11800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4628 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4548 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6282 ; 1.663 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10500 ; 0.554 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 583 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ; 8.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;15.956 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5346 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1074 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 890 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 68 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2224 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 347 ; 0.244 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2203 ; 3.449 ; 3.118 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2203 ; 3.449 ; 3.118 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2761 ; 4.761 ; 5.569 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2762 ; 4.760 ; 5.571 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2425 ; 4.684 ; 3.667 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2426 ; 4.683 ; 3.669 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3486 ; 7.212 ; 6.462 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3487 ; 7.211 ; 6.464 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8P5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.836 REMARK 200 RESOLUTION RANGE LOW (A) : 111.255 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3-0.8 M NAACETATE PH 6, 20-26% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 76.30000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.05183 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.71333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 76.30000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.05183 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.71333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 76.30000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.05183 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.71333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 76.30000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 44.05183 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.71333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 76.30000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 44.05183 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.71333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 76.30000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 44.05183 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.71333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 88.10365 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 137.42667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 88.10365 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 137.42667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 88.10365 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 137.42667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 88.10365 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 137.42667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 88.10365 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 137.42667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 88.10365 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 137.42667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 552 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 150 REMARK 465 GLY A 151 REMARK 465 ARG A 152 REMARK 465 ARG A 153 REMARK 465 SER A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 150 REMARK 465 GLY B 151 REMARK 465 ARG B 152 REMARK 465 ARG B 153 REMARK 465 SER B 281 REMARK 465 PRO B 282 REMARK 465 SER B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 72 H ASN B 74 1.15 REMARK 500 HD1 HIS A 72 H ASN A 74 1.19 REMARK 500 HD1 HIS B 136 H ASP B 138 1.22 REMARK 500 HD1 HIS B 275 H PHE B 277 1.23 REMARK 500 HD1 HIS A 136 H ASP A 138 1.25 REMARK 500 HD1 HIS A 35 H GLU A 37 1.31 REMARK 500 HG23 VAL B 76 O HOH B 534 1.46 REMARK 500 HD1 HIS A 263 O HOH A 407 1.53 REMARK 500 O HOH B 486 O HOH B 573 1.56 REMARK 500 O HOH B 551 O HOH B 567 1.72 REMARK 500 O HOH A 401 O HOH A 560 1.81 REMARK 500 O HOH B 562 O HOH B 602 1.88 REMARK 500 O HOH A 546 O HOH A 611 1.95 REMARK 500 O HOH B 402 O HOH B 477 1.99 REMARK 500 O HOH A 497 O HOH A 622 2.02 REMARK 500 O HOH A 611 O HOH A 630 2.04 REMARK 500 OD2 ASP A 99 O HOH A 401 2.05 REMARK 500 O HOH B 443 O HOH B 529 2.06 REMARK 500 O HOH A 403 O HOH A 602 2.14 REMARK 500 O HOH A 550 O HOH B 485 2.15 REMARK 500 NH1 ARG A 127 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 637 O HOH A 637 4555 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 31.82 -93.51 REMARK 500 ASP A 20 62.63 -103.01 REMARK 500 ASN A 52 59.63 -145.57 REMARK 500 ARG A 108 -53.66 71.44 REMARK 500 ASP A 138 44.42 -141.06 REMARK 500 ASP A 165 75.49 66.26 REMARK 500 LYS B 13 23.11 -75.51 REMARK 500 ASP B 20 50.75 -90.72 REMARK 500 GLU B 37 -70.73 -82.92 REMARK 500 ARG B 108 -48.30 72.12 REMARK 500 ASP B 138 41.55 -144.02 REMARK 500 ASP B 165 81.81 63.29 REMARK 500 ASP B 199 -156.74 -140.36 REMARK 500 LEU B 259 39.48 -99.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 136 O REMARK 620 2 ASP A 165 O 138.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 191 OE2 REMARK 620 2 ASP A 199 OD1 145.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 136 O REMARK 620 2 ASP B 165 O 136.6 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8P5G RELATED DB: PDB DBREF 8P5L A 1 283 UNP O75385 ULK1_HUMAN 1 283 DBREF 8P5L B 1 283 UNP O75385 ULK1_HUMAN 1 283 SEQADV 8P5L SER A 0 UNP O75385 EXPRESSION TAG SEQADV 8P5L ALA A 245 UNP O75385 ARG 245 ENGINEERED MUTATION SEQADV 8P5L ALA A 246 UNP O75385 GLU 246 ENGINEERED MUTATION SEQADV 8P5L SER B 0 UNP O75385 EXPRESSION TAG SEQADV 8P5L ALA B 245 UNP O75385 ARG 245 ENGINEERED MUTATION SEQADV 8P5L ALA B 246 UNP O75385 GLU 246 ENGINEERED MUTATION SEQRES 1 A 284 SER MET GLU PRO GLY ARG GLY GLY THR GLU THR VAL GLY SEQRES 2 A 284 LYS PHE GLU PHE SER ARG LYS ASP LEU ILE GLY HIS GLY SEQRES 3 A 284 ALA PHE ALA VAL VAL PHE LYS GLY ARG HIS ARG GLU LYS SEQRES 4 A 284 HIS ASP LEU GLU VAL ALA VAL LYS CYS ILE ASN LYS LYS SEQRES 5 A 284 ASN LEU ALA LYS SER GLN THR LEU LEU GLY LYS GLU ILE SEQRES 6 A 284 LYS ILE LEU LYS GLU LEU LYS HIS GLU ASN ILE VAL ALA SEQRES 7 A 284 LEU TYR ASP PHE GLN GLU MET ALA ASN SER VAL TYR LEU SEQRES 8 A 284 VAL MET GLU TYR CYS ASN GLY GLY ASP LEU ALA ASP TYR SEQRES 9 A 284 LEU HIS ALA MET ARG THR LEU SER GLU ASP THR ILE ARG SEQRES 10 A 284 LEU PHE LEU GLN GLN ILE ALA GLY ALA MET ARG LEU LEU SEQRES 11 A 284 HIS SER LYS GLY ILE ILE HIS ARG ASP LEU LYS PRO GLN SEQRES 12 A 284 ASN ILE LEU LEU SER ASN PRO ALA GLY ARG ARG ALA ASN SEQRES 13 A 284 PRO ASN SER ILE ARG VAL LYS ILE ALA ASP PHE GLY PHE SEQRES 14 A 284 ALA ARG TYR LEU GLN SER ASN MET MET ALA ALA TPO LEU SEQRES 15 A 284 CYS GLY SER PRO MET TYR MET ALA PRO GLU VAL ILE MET SEQRES 16 A 284 SER GLN HIS TYR ASP GLY LYS ALA ASP LEU TRP SER ILE SEQRES 17 A 284 GLY THR ILE VAL TYR GLN CYS LEU THR GLY LYS ALA PRO SEQRES 18 A 284 PHE GLN ALA SER SER PRO GLN ASP LEU ARG LEU PHE TYR SEQRES 19 A 284 GLU LYS ASN LYS THR LEU VAL PRO THR ILE PRO ALA ALA SEQRES 20 A 284 THR SER ALA PRO LEU ARG GLN LEU LEU LEU ALA LEU LEU SEQRES 21 A 284 GLN ARG ASN HIS LYS ASP ARG MET ASP PHE ASP GLU PHE SEQRES 22 A 284 PHE HIS HIS PRO PHE LEU ASP ALA SER PRO SER SEQRES 1 B 284 SER MET GLU PRO GLY ARG GLY GLY THR GLU THR VAL GLY SEQRES 2 B 284 LYS PHE GLU PHE SER ARG LYS ASP LEU ILE GLY HIS GLY SEQRES 3 B 284 ALA PHE ALA VAL VAL PHE LYS GLY ARG HIS ARG GLU LYS SEQRES 4 B 284 HIS ASP LEU GLU VAL ALA VAL LYS CYS ILE ASN LYS LYS SEQRES 5 B 284 ASN LEU ALA LYS SER GLN THR LEU LEU GLY LYS GLU ILE SEQRES 6 B 284 LYS ILE LEU LYS GLU LEU LYS HIS GLU ASN ILE VAL ALA SEQRES 7 B 284 LEU TYR ASP PHE GLN GLU MET ALA ASN SER VAL TYR LEU SEQRES 8 B 284 VAL MET GLU TYR CYS ASN GLY GLY ASP LEU ALA ASP TYR SEQRES 9 B 284 LEU HIS ALA MET ARG THR LEU SER GLU ASP THR ILE ARG SEQRES 10 B 284 LEU PHE LEU GLN GLN ILE ALA GLY ALA MET ARG LEU LEU SEQRES 11 B 284 HIS SER LYS GLY ILE ILE HIS ARG ASP LEU LYS PRO GLN SEQRES 12 B 284 ASN ILE LEU LEU SER ASN PRO ALA GLY ARG ARG ALA ASN SEQRES 13 B 284 PRO ASN SER ILE ARG VAL LYS ILE ALA ASP PHE GLY PHE SEQRES 14 B 284 ALA ARG TYR LEU GLN SER ASN MET MET ALA ALA TPO LEU SEQRES 15 B 284 CYS GLY SER PRO MET TYR MET ALA PRO GLU VAL ILE MET SEQRES 16 B 284 SER GLN HIS TYR ASP GLY LYS ALA ASP LEU TRP SER ILE SEQRES 17 B 284 GLY THR ILE VAL TYR GLN CYS LEU THR GLY LYS ALA PRO SEQRES 18 B 284 PHE GLN ALA SER SER PRO GLN ASP LEU ARG LEU PHE TYR SEQRES 19 B 284 GLU LYS ASN LYS THR LEU VAL PRO THR ILE PRO ALA ALA SEQRES 20 B 284 THR SER ALA PRO LEU ARG GLN LEU LEU LEU ALA LEU LEU SEQRES 21 B 284 GLN ARG ASN HIS LYS ASP ARG MET ASP PHE ASP GLU PHE SEQRES 22 B 284 PHE HIS HIS PRO PHE LEU ASP ALA SER PRO SER MODRES 8P5L TPO A 180 THR MODIFIED RESIDUE MODRES 8P5L TPO B 180 THR MODIFIED RESIDUE HET TPO A 180 17 HET TPO B 180 17 HET 1FV A 301 70 HET MG A 302 1 HET MG A 303 1 HET 1FV B 301 70 HET MG B 302 1 HET MG B 303 1 HETNAM TPO PHOSPHOTHREONINE HETNAM 1FV N-{3-[(5-CYCLOPROPYL-2-{[3-(MORPHOLIN-4-YLMETHYL) HETNAM 2 1FV PHENYL]AMINO}PYRIMIDIN-4-YL) HETNAM 3 1FV AMINO]PROPYL}CYCLOBUTANECARBOXAMIDE HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN 1FV MRT67307 FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 1FV 2(C26 H36 N6 O2) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *446(H2 O) HELIX 1 AA1 ASN A 49 LYS A 51 5 3 HELIX 2 AA2 ASN A 52 LYS A 68 1 17 HELIX 3 AA3 LEU A 100 ARG A 108 1 9 HELIX 4 AA4 SER A 111 GLY A 133 1 23 HELIX 5 AA5 LYS A 140 GLN A 142 5 3 HELIX 6 AA6 ASN A 155 ILE A 159 5 5 HELIX 7 AA7 ALA A 189 MET A 194 1 6 HELIX 8 AA8 GLY A 200 GLY A 217 1 18 HELIX 9 AA9 SER A 225 ASN A 236 1 12 HELIX 10 AB1 SER A 248 LEU A 259 1 12 HELIX 11 AB2 ASP A 268 HIS A 274 1 7 HELIX 12 AB3 HIS A 275 ASP A 279 5 5 HELIX 13 AB4 ASN B 49 LYS B 51 5 3 HELIX 14 AB5 ASN B 52 LYS B 68 1 17 HELIX 15 AB6 ASP B 99 ARG B 108 1 10 HELIX 16 AB7 SER B 111 GLY B 133 1 23 HELIX 17 AB8 LYS B 140 GLN B 142 5 3 HELIX 18 AB9 SER B 184 MET B 188 5 5 HELIX 19 AC1 ALA B 189 MET B 194 1 6 HELIX 20 AC2 GLY B 200 GLY B 217 1 18 HELIX 21 AC3 SER B 225 ASN B 236 1 12 HELIX 22 AC4 SER B 248 LEU B 259 1 12 HELIX 23 AC5 ASN B 262 ARG B 266 5 5 HELIX 24 AC6 ASP B 268 HIS B 274 1 7 HELIX 25 AC7 HIS B 275 ASP B 279 5 5 SHEET 1 AA1 6 GLU A 9 VAL A 11 0 SHEET 2 AA1 6 PHE A 14 GLY A 25 -1 O PHE A 14 N VAL A 11 SHEET 3 AA1 6 ALA A 28 HIS A 35 -1 O VAL A 30 N ILE A 22 SHEET 4 AA1 6 GLU A 42 CYS A 47 -1 O VAL A 45 N PHE A 31 SHEET 5 AA1 6 VAL A 88 GLU A 93 -1 O MET A 92 N ALA A 44 SHEET 6 AA1 6 LEU A 78 GLU A 83 -1 N ASP A 80 O VAL A 91 SHEET 1 AA2 3 GLY A 98 ASP A 99 0 SHEET 2 AA2 3 ILE A 144 SER A 147 -1 O LEU A 146 N GLY A 98 SHEET 3 AA2 3 ARG A 160 ILE A 163 -1 O LYS A 162 N LEU A 145 SHEET 1 AA3 2 ILE A 134 ILE A 135 0 SHEET 2 AA3 2 ARG A 170 TYR A 171 -1 O ARG A 170 N ILE A 135 SHEET 1 AA4 6 GLU B 9 VAL B 11 0 SHEET 2 AA4 6 PHE B 14 GLY B 25 -1 O PHE B 14 N VAL B 11 SHEET 3 AA4 6 ALA B 28 HIS B 35 -1 O ARG B 34 N GLU B 15 SHEET 4 AA4 6 GLU B 42 CYS B 47 -1 O VAL B 45 N PHE B 31 SHEET 5 AA4 6 VAL B 88 GLU B 93 -1 O MET B 92 N ALA B 44 SHEET 6 AA4 6 LEU B 78 GLU B 83 -1 N ASP B 80 O VAL B 91 SHEET 1 AA5 2 ILE B 134 ILE B 135 0 SHEET 2 AA5 2 ARG B 170 TYR B 171 -1 O ARG B 170 N ILE B 135 SHEET 1 AA6 2 ILE B 144 SER B 147 0 SHEET 2 AA6 2 ARG B 160 ILE B 163 -1 O LYS B 162 N LEU B 145 LINK C ALA A 179 N TPO A 180 1555 1555 1.31 LINK C TPO A 180 N LEU A 181 1555 1555 1.33 LINK C ALA B 179 N TPO B 180 1555 1555 1.33 LINK C TPO B 180 N LEU B 181 1555 1555 1.35 LINK O HIS A 136 MG MG A 303 1555 1555 2.81 LINK O ASP A 165 MG MG A 303 1555 1555 2.74 LINK OE2 GLU A 191 MG MG A 302 1555 1555 2.73 LINK OD1 ASP A 199 MG MG A 302 1555 1555 2.88 LINK O HIS B 136 MG MG B 303 1555 1555 2.80 LINK O ASP B 165 MG MG B 303 1555 1555 2.76 LINK OE2 GLU B 191 MG MG B 302 1555 1555 2.73 CRYST1 152.600 152.600 206.140 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006553 0.003783 0.000000 0.00000 SCALE2 0.000000 0.007567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004851 0.00000