HEADER FLUORESCENT PROTEIN 26-MAY-23 8P6G
TITLE CRYSTAL STRUCTURE OF THE IMPROVED VERSION OF THE GENETICALLY ENCODED
TITLE 2 GREEN CALCIUM INDICATOR YTNC2-5
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GENETICALLY ENCODED GREEN CALCIUM INDICATOR YTNC2-5 BASED
COMPND 3 ON TROPONIN C FROM TOADFISH;
COMPND 4 CHAIN: B, D;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 3 ORGANISM_TAXID: 32630;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS CALCIUM SENSOR, INDICATOR, TNC, TROPONIN, GECI, YTNC2, FLUORESCENT
KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,O.M.SUBACH,A.V.VLASKINA,Y.K.AGAPOVA,
AUTHOR 2 V.O.POPOV,F.V.SUBACH
REVDAT 2 13-NOV-24 8P6G 1 REMARK
REVDAT 1 03-APR-24 8P6G 0
JRNL AUTH O.M.SUBACH,A.V.VLASKINA,Y.K.AGAPOVA,A.Y.NIKOLAEVA,
JRNL AUTH 2 A.M.VARIZHUK,O.V.PODGORNY,K.D.PIATKEVICH,M.V.PATRUSHEV,
JRNL AUTH 3 K.M.BOYKO,F.V.SUBACH
JRNL TITL YTNC2, AN IMPROVED GENETICALLY ENCODED GREEN CALCIUM
JRNL TITL 2 INDICATOR BASED ON TOADFISH TROPONIN C.
JRNL REF FEBS OPEN BIO V. 13 2047 2023
JRNL REFN ESSN 2211-5463
JRNL PMID 37650870
JRNL DOI 10.1002/2211-5463.13702
REMARK 2
REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0411
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 52835
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.186
REMARK 3 R VALUE (WORKING SET) : 0.183
REMARK 3 FREE R VALUE : 0.229
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 2837
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3946
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37
REMARK 3 BIN R VALUE (WORKING SET) : 0.2190
REMARK 3 BIN FREE R VALUE SET COUNT : 175
REMARK 3 BIN FREE R VALUE : 0.3080
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3880
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 14
REMARK 3 SOLVENT ATOMS : 214
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.73000
REMARK 3 B22 (A**2) : 5.73000
REMARK 3 B33 (A**2) : -11.46000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.026
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.107
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4016 ; 0.011 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 3683 ; 0.003 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5427 ; 2.029 ; 1.659
REMARK 3 BOND ANGLES OTHERS (DEGREES): 8482 ; 0.779 ; 1.582
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 9.175 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 8.835 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;16.356 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.109 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4723 ; 0.011 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 3.698 ; 3.011
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1947 ; 3.690 ; 3.010
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2425 ; 4.809 ; 5.420
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2426 ; 4.809 ; 5.420
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 3.826 ; 3.185
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2069 ; 3.825 ; 3.185
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3002 ; 5.167 ; 5.768
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4149 ; 6.867 ;30.080
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4119 ; 6.859 ;29.660
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 5 B 401
REMARK 3 ORIGIN FOR THE GROUP (A): 33.7250 -21.8020 -0.5933
REMARK 3 T TENSOR
REMARK 3 T11: 0.0408 T22: 0.0058
REMARK 3 T33: 0.0023 T12: -0.0025
REMARK 3 T13: 0.0001 T23: 0.0026
REMARK 3 L TENSOR
REMARK 3 L11: 0.4679 L22: 0.2223
REMARK 3 L33: 0.2547 L12: -0.0445
REMARK 3 L13: 0.0765 L23: 0.0774
REMARK 3 S TENSOR
REMARK 3 S11: -0.0188 S12: 0.0322 S13: 0.0321
REMARK 3 S21: 0.0445 S22: 0.0114 S23: 0.0026
REMARK 3 S31: 0.0532 S32: -0.0125 S33: 0.0074
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 6 D 401
REMARK 3 ORIGIN FOR THE GROUP (A): 30.9561 -16.9351 -37.8732
REMARK 3 T TENSOR
REMARK 3 T11: 0.0125 T22: 0.0342
REMARK 3 T33: 0.0027 T12: 0.0124
REMARK 3 T13: -0.0036 T23: 0.0021
REMARK 3 L TENSOR
REMARK 3 L11: 0.1799 L22: 0.4688
REMARK 3 L33: 0.1900 L12: 0.0626
REMARK 3 L13: -0.1113 L23: -0.0117
REMARK 3 S TENSOR
REMARK 3 S11: 0.0385 S12: 0.0113 S13: -0.0182
REMARK 3 S21: 0.0026 S22: -0.0430 S23: -0.0212
REMARK 3 S31: -0.0217 S32: -0.0365 S33: 0.0044
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 8P6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-23.
REMARK 100 THE DEPOSITION ID IS D_1292130774.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-SEP-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SPRING-8
REMARK 200 BEAMLINE : BL41XU
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55880
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950
REMARK 200 RESOLUTION RANGE LOW (A) : 46.140
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 20.20
REMARK 200 R MERGE (I) : 0.31300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 19.10
REMARK 200 R MERGE FOR SHELL (I) : 3.56700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.18
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FLUORIDE, 0.1M BIS-TRIS
REMARK 280 PROPANE, 20% PEG 3350 PH 7.5, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 288K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 210.02400
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.01200
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.51800
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.50600
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 262.53000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS B 0
REMARK 465 MET B 1
REMARK 465 ARG B 2
REMARK 465 SER B 3
REMARK 465 MET B 4
REMARK 465 GLU B 153
REMARK 465 GLU B 154
REMARK 465 GLU B 155
REMARK 465 LEU B 156
REMARK 465 THR B 157
REMARK 465 GLU B 158
REMARK 465 SER B 159
REMARK 465 PHE B 160
REMARK 465 ARG B 161
REMARK 465 THR B 162
REMARK 465 PHE B 163
REMARK 465 ASP B 164
REMARK 465 LYS B 165
REMARK 465 ASP B 166
REMARK 465 GLY B 167
REMARK 465 ASP B 168
REMARK 465 GLY B 169
REMARK 465 PHE B 170
REMARK 465 ILE B 171
REMARK 465 ASP B 172
REMARK 465 ARG B 173
REMARK 465 GLU B 174
REMARK 465 GLU B 175
REMARK 465 PHE B 176
REMARK 465 GLY B 177
REMARK 465 GLY B 178
REMARK 465 ILE B 179
REMARK 465 ILE B 180
REMARK 465 ARG B 181
REMARK 465 LEU B 182
REMARK 465 THR B 183
REMARK 465 GLY B 184
REMARK 465 GLU B 185
REMARK 465 GLN B 186
REMARK 465 LEU B 187
REMARK 465 THR B 188
REMARK 465 ASP B 189
REMARK 465 GLU B 190
REMARK 465 ASP B 191
REMARK 465 SER B 192
REMARK 465 ASP B 193
REMARK 465 GLU B 194
REMARK 465 ILE B 195
REMARK 465 PHE B 196
REMARK 465 GLY B 197
REMARK 465 ASP B 198
REMARK 465 SER B 199
REMARK 465 ASP B 200
REMARK 465 THR B 201
REMARK 465 ASP B 202
REMARK 465 LYS B 203
REMARK 465 ASN B 204
REMARK 465 GLY B 205
REMARK 465 ARG B 206
REMARK 465 ILE B 207
REMARK 465 THR B 307
REMARK 465 HIS B 308
REMARK 465 GLY B 309
REMARK 465 MET B 310
REMARK 465 ASP B 311
REMARK 465 GLU B 312
REMARK 465 LEU B 313
REMARK 465 TYR B 314
REMARK 465 LYS B 315
REMARK 465 HIS D 0
REMARK 465 MET D 1
REMARK 465 ARG D 2
REMARK 465 SER D 3
REMARK 465 MET D 4
REMARK 465 VAL D 5
REMARK 465 GLU D 154
REMARK 465 GLU D 155
REMARK 465 LEU D 156
REMARK 465 THR D 157
REMARK 465 GLU D 158
REMARK 465 SER D 159
REMARK 465 PHE D 160
REMARK 465 ARG D 161
REMARK 465 THR D 162
REMARK 465 PHE D 163
REMARK 465 ASP D 164
REMARK 465 LYS D 165
REMARK 465 ASP D 166
REMARK 465 GLY D 167
REMARK 465 ASP D 168
REMARK 465 GLY D 169
REMARK 465 PHE D 170
REMARK 465 ILE D 171
REMARK 465 ASP D 172
REMARK 465 ARG D 173
REMARK 465 GLU D 174
REMARK 465 GLU D 175
REMARK 465 PHE D 176
REMARK 465 GLY D 177
REMARK 465 GLY D 178
REMARK 465 ILE D 179
REMARK 465 ILE D 180
REMARK 465 ARG D 181
REMARK 465 LEU D 182
REMARK 465 THR D 183
REMARK 465 GLY D 184
REMARK 465 GLU D 185
REMARK 465 GLN D 186
REMARK 465 LEU D 187
REMARK 465 THR D 188
REMARK 465 ASP D 189
REMARK 465 GLU D 190
REMARK 465 ASP D 191
REMARK 465 SER D 192
REMARK 465 ASP D 193
REMARK 465 GLU D 194
REMARK 465 ILE D 195
REMARK 465 PHE D 196
REMARK 465 GLY D 197
REMARK 465 ASP D 198
REMARK 465 SER D 199
REMARK 465 ASP D 200
REMARK 465 THR D 201
REMARK 465 ASP D 202
REMARK 465 LYS D 203
REMARK 465 ASN D 204
REMARK 465 GLY D 205
REMARK 465 ARG D 206
REMARK 465 ILE D 306
REMARK 465 THR D 307
REMARK 465 HIS D 308
REMARK 465 GLY D 309
REMARK 465 MET D 310
REMARK 465 ASP D 311
REMARK 465 GLU D 312
REMARK 465 LEU D 313
REMARK 465 TYR D 314
REMARK 465 LYS D 315
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL B 5 CG1 CG2
REMARK 470 CRO B 70 CB1 CG1 OG1
REMARK 470 SER B 152 OG
REMARK 470 LYS B 233 CE NZ
REMARK 470 LYS B 235 CE NZ
REMARK 470 ILE B 306 CG1 CG2 CD1
REMARK 470 GLU D 9 CG CD OE1 OE2
REMARK 470 CRO D 70 CB1 CG1 OG1
REMARK 470 LYS D 130 CD CE NZ
REMARK 470 SER D 152 OG
REMARK 470 GLU D 153 CG CD OE1 OE2
REMARK 470 ILE D 207 CG1 CG2 CD1
REMARK 470 LYS D 233 CG CD CE NZ
REMARK 470 GLN D 234 CG CD OE1 NE2
REMARK 470 ARG D 245 CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 TYR D 43 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES
REMARK 500 TYR D 43 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES
REMARK 500 ARG D 220 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP B 107 -156.92 -150.65
REMARK 500 ILE B 140 -66.23 -90.37
REMARK 500 ASP D 107 -151.96 -148.55
REMARK 500 ILE D 140 -65.91 -92.13
REMARK 500 LEU D 151 152.74 54.07
REMARK 500 ASP D 232 74.84 -106.81
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG D 126 0.09 SIDE CHAIN
REMARK 500 ARG D 279 0.10 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8P6G B 0 315 PDB 8P6G 8P6G 0 315
DBREF 8P6G D 0 315 PDB 8P6G 8P6G 0 315
SEQRES 1 B 314 HIS MET ARG SER MET VAL SER LYS GLY GLU GLU LEU PHE
SEQRES 2 B 314 THR GLY VAL VAL PRO ILE LEU VAL GLU MET VAL GLY ASP
SEQRES 3 B 314 VAL ASN GLY HIS ARG PHE SER VAL SER GLY GLU GLY GLU
SEQRES 4 B 314 GLY ILE ALA THR TYR GLY MET LEU THR LEU LYS LEU ILE
SEQRES 5 B 314 CYS THR THR GLY GLU LEU PRO VAL PRO TRP PRO THR LEU
SEQRES 6 B 314 VAL THR THR LEU CRO MET ALA CYS PHE ALA ARG TYR PRO
SEQRES 7 B 314 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET
SEQRES 8 B 314 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS
SEQRES 9 B 314 ASP ASP GLY TYR TYR LYS THR ARG ALA GLU VAL LYS PHE
SEQRES 10 B 314 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY
SEQRES 11 B 314 PHE ASP PHE ARG GLU ASP GLY ASN ILE LEU GLY HIS LYS
SEQRES 12 B 314 LEU GLY TYR ASN PHE ASP LEU SER GLU GLU GLU LEU THR
SEQRES 13 B 314 GLU SER PHE ARG THR PHE ASP LYS ASP GLY ASP GLY PHE
SEQRES 14 B 314 ILE ASP ARG GLU GLU PHE GLY GLY ILE ILE ARG LEU THR
SEQRES 15 B 314 GLY GLU GLN LEU THR ASP GLU ASP SER ASP GLU ILE PHE
SEQRES 16 B 314 GLY ASP SER ASP THR ASP LYS ASN GLY ARG ILE ASP PHE
SEQRES 17 B 314 GLY GLU PHE LEU LYS MET VAL GLU ASN VAL ARG GLY ILE
SEQRES 18 B 314 ASN SER HIS SER VAL TYR ILE THR ALA ASP LYS GLN LYS
SEQRES 19 B 314 ASN GLY VAL LYS ALA HIS PHE GLU ILE ARG HIS ASN LEU
SEQRES 20 B 314 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN
SEQRES 21 B 314 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP
SEQRES 22 B 314 ASN HIS TYR LEU ARG HIS GLN SER ALA LEU SER LYS ASP
SEQRES 23 B 314 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU GLN GLU PHE
SEQRES 24 B 314 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU
SEQRES 25 B 314 TYR LYS
SEQRES 1 D 314 HIS MET ARG SER MET VAL SER LYS GLY GLU GLU LEU PHE
SEQRES 2 D 314 THR GLY VAL VAL PRO ILE LEU VAL GLU MET VAL GLY ASP
SEQRES 3 D 314 VAL ASN GLY HIS ARG PHE SER VAL SER GLY GLU GLY GLU
SEQRES 4 D 314 GLY ILE ALA THR TYR GLY MET LEU THR LEU LYS LEU ILE
SEQRES 5 D 314 CYS THR THR GLY GLU LEU PRO VAL PRO TRP PRO THR LEU
SEQRES 6 D 314 VAL THR THR LEU CRO MET ALA CYS PHE ALA ARG TYR PRO
SEQRES 7 D 314 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET
SEQRES 8 D 314 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS
SEQRES 9 D 314 ASP ASP GLY TYR TYR LYS THR ARG ALA GLU VAL LYS PHE
SEQRES 10 D 314 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY
SEQRES 11 D 314 PHE ASP PHE ARG GLU ASP GLY ASN ILE LEU GLY HIS LYS
SEQRES 12 D 314 LEU GLY TYR ASN PHE ASP LEU SER GLU GLU GLU LEU THR
SEQRES 13 D 314 GLU SER PHE ARG THR PHE ASP LYS ASP GLY ASP GLY PHE
SEQRES 14 D 314 ILE ASP ARG GLU GLU PHE GLY GLY ILE ILE ARG LEU THR
SEQRES 15 D 314 GLY GLU GLN LEU THR ASP GLU ASP SER ASP GLU ILE PHE
SEQRES 16 D 314 GLY ASP SER ASP THR ASP LYS ASN GLY ARG ILE ASP PHE
SEQRES 17 D 314 GLY GLU PHE LEU LYS MET VAL GLU ASN VAL ARG GLY ILE
SEQRES 18 D 314 ASN SER HIS SER VAL TYR ILE THR ALA ASP LYS GLN LYS
SEQRES 19 D 314 ASN GLY VAL LYS ALA HIS PHE GLU ILE ARG HIS ASN LEU
SEQRES 20 D 314 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN
SEQRES 21 D 314 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP
SEQRES 22 D 314 ASN HIS TYR LEU ARG HIS GLN SER ALA LEU SER LYS ASP
SEQRES 23 D 314 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU GLN GLU PHE
SEQRES 24 D 314 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU
SEQRES 25 D 314 TYR LYS
HET CRO B 70 19
HET CRO D 70 19
HET PEG B 401 7
HET PEG D 401 7
HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-
HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-
HETNAM 3 CRO YL}ACETIC ACID
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETSYN CRO PEPTIDE DERIVED CHROMOPHORE
FORMUL 1 CRO 2(C15 H17 N3 O5)
FORMUL 3 PEG 2(C4 H10 O3)
FORMUL 5 HOH *214(H2 O)
HELIX 1 AA1 GLU B 9 THR B 13 5 5
HELIX 2 AA2 ALA B 41 TYR B 43 5 3
HELIX 3 AA3 PRO B 60 VAL B 65 5 6
HELIX 4 AA4 MET B 72 ALA B 76 5 5
HELIX 5 AA5 PRO B 79 HIS B 85 5 7
HELIX 6 AA6 ASP B 86 ALA B 91 1 6
HELIX 7 AA7 PHE B 209 ASN B 218 1 10
HELIX 8 AA8 GLY D 8 THR D 13 5 6
HELIX 9 AA9 PRO D 60 VAL D 65 5 6
HELIX 10 AB1 MET D 72 ALA D 76 5 5
HELIX 11 AB2 PRO D 79 HIS D 85 5 7
HELIX 12 AB3 ASP D 86 ALA D 91 1 6
HELIX 13 AB4 ASP D 208 ASN D 218 1 11
HELIX 14 AB5 LYS D 233 ASN D 236 5 4
SHEET 1 AA112 VAL B 16 VAL B 26 0
SHEET 2 AA112 HIS B 29 ILE B 40 -1 O GLY B 35 N VAL B 20
SHEET 3 AA112 MET B 45 CYS B 52 -1 O MET B 45 N ILE B 40
SHEET 4 AA112 HIS B 294 ALA B 304 -1 O MET B 295 N LEU B 50
SHEET 5 AA112 HIS B 276 SER B 285 -1 N ARG B 279 O THR B 302
SHEET 6 AA112 HIS B 225 ASP B 232 -1 N ILE B 229 O HIS B 276
SHEET 7 AA112 GLY B 237 ASN B 247 -1 O LYS B 239 N THR B 230
SHEET 8 AA112 VAL B 253 PRO B 264 -1 O HIS B 258 N PHE B 242
SHEET 9 AA112 TYR B 96 PHE B 104 -1 N GLU B 99 O GLN B 261
SHEET 10 AA112 TYR B 109 GLU B 119 -1 O THR B 112 N ARG B 100
SHEET 11 AA112 THR B 122 PHE B 132 -1 O GLU B 128 N ARG B 113
SHEET 12 AA112 VAL B 16 VAL B 26 1 N GLU B 21 O ILE B 127
SHEET 1 AA212 VAL D 16 VAL D 26 0
SHEET 2 AA212 HIS D 29 ILE D 40 -1 O GLY D 35 N VAL D 20
SHEET 3 AA212 MET D 45 CYS D 52 -1 O ILE D 51 N SER D 34
SHEET 4 AA212 HIS D 294 ALA D 304 -1 O MET D 295 N LEU D 50
SHEET 5 AA212 HIS D 276 SER D 285 -1 N GLN D 281 O PHE D 300
SHEET 6 AA212 HIS D 225 ASP D 232 -1 N HIS D 225 O HIS D 280
SHEET 7 AA212 GLY D 237 ASN D 247 -1 O GLY D 237 N ASP D 232
SHEET 8 AA212 VAL D 253 PRO D 264 -1 O HIS D 258 N PHE D 242
SHEET 9 AA212 TYR D 96 PHE D 104 -1 N VAL D 97 O THR D 263
SHEET 10 AA212 TYR D 109 GLU D 119 -1 O VAL D 116 N TYR D 96
SHEET 11 AA212 THR D 122 PHE D 132 -1 O GLU D 128 N ARG D 113
SHEET 12 AA212 VAL D 16 VAL D 26 1 N GLU D 21 O ILE D 127
LINK C LEU B 68 N1 CRO B 70 1555 1555 1.36
LINK C3 CRO B 70 N MET B 72 1555 1555 1.35
LINK C LEU D 68 N1 CRO D 70 1555 1555 1.35
LINK C3 CRO D 70 N MET D 72 1555 1555 1.36
CISPEP 1 MET B 92 PRO B 93 0 6.33
CISPEP 2 MET D 92 PRO D 93 0 5.84
CRYST1 65.736 65.736 315.036 90.00 90.00 120.00 P 65 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015212 0.008783 0.000000 0.00000
SCALE2 0.000000 0.017566 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003174 0.00000