HEADER FLUORESCENT PROTEIN 26-MAY-23 8P6G TITLE CRYSTAL STRUCTURE OF THE IMPROVED VERSION OF THE GENETICALLY ENCODED TITLE 2 GREEN CALCIUM INDICATOR YTNC2-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENETICALLY ENCODED GREEN CALCIUM INDICATOR YTNC2-5 BASED COMPND 3 ON TROPONIN C FROM TOADFISH; COMPND 4 CHAIN: B, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM SENSOR, INDICATOR, TNC, TROPONIN, GECI, YTNC2, FLUORESCENT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,O.M.SUBACH,A.V.VLASKINA,Y.K.AGAPOVA, AUTHOR 2 V.O.POPOV,F.V.SUBACH REVDAT 1 03-APR-24 8P6G 0 JRNL AUTH O.M.SUBACH,A.V.VLASKINA,Y.K.AGAPOVA,A.Y.NIKOLAEVA, JRNL AUTH 2 A.M.VARIZHUK,O.V.PODGORNY,K.D.PIATKEVICH,M.V.PATRUSHEV, JRNL AUTH 3 K.M.BOYKO,F.V.SUBACH JRNL TITL YTNC2, AN IMPROVED GENETICALLY ENCODED GREEN CALCIUM JRNL TITL 2 INDICATOR BASED ON TOADFISH TROPONIN C. JRNL REF FEBS OPEN BIO V. 13 2047 2023 JRNL REFN ESSN 2211-5463 JRNL PMID 37650870 JRNL DOI 10.1002/2211-5463.13702 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3880 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.73000 REMARK 3 B22 (A**2) : 5.73000 REMARK 3 B33 (A**2) : -11.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.107 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4016 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3683 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5427 ; 2.029 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8482 ; 0.779 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 9.175 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 8.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;16.356 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4723 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 3.698 ; 3.011 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1947 ; 3.690 ; 3.010 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2425 ; 4.809 ; 5.420 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2426 ; 4.809 ; 5.420 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 3.826 ; 3.185 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2069 ; 3.825 ; 3.185 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3002 ; 5.167 ; 5.768 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4149 ; 6.867 ;30.080 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4119 ; 6.859 ;29.660 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7250 -21.8020 -0.5933 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0058 REMARK 3 T33: 0.0023 T12: -0.0025 REMARK 3 T13: 0.0001 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4679 L22: 0.2223 REMARK 3 L33: 0.2547 L12: -0.0445 REMARK 3 L13: 0.0765 L23: 0.0774 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0322 S13: 0.0321 REMARK 3 S21: 0.0445 S22: 0.0114 S23: 0.0026 REMARK 3 S31: 0.0532 S32: -0.0125 S33: 0.0074 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 401 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9561 -16.9351 -37.8732 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0342 REMARK 3 T33: 0.0027 T12: 0.0124 REMARK 3 T13: -0.0036 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.1799 L22: 0.4688 REMARK 3 L33: 0.1900 L12: 0.0626 REMARK 3 L13: -0.1113 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.0113 S13: -0.0182 REMARK 3 S21: 0.0026 S22: -0.0430 S23: -0.0212 REMARK 3 S31: -0.0217 S32: -0.0365 S33: 0.0044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8P6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292130774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : 0.31300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 19.10 REMARK 200 R MERGE FOR SHELL (I) : 3.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FLUORIDE, 0.1M BIS-TRIS REMARK 280 PROPANE, 20% PEG 3350 PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 210.02400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.01200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.51800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.50600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 262.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 MET B 4 REMARK 465 GLU B 153 REMARK 465 GLU B 154 REMARK 465 GLU B 155 REMARK 465 LEU B 156 REMARK 465 THR B 157 REMARK 465 GLU B 158 REMARK 465 SER B 159 REMARK 465 PHE B 160 REMARK 465 ARG B 161 REMARK 465 THR B 162 REMARK 465 PHE B 163 REMARK 465 ASP B 164 REMARK 465 LYS B 165 REMARK 465 ASP B 166 REMARK 465 GLY B 167 REMARK 465 ASP B 168 REMARK 465 GLY B 169 REMARK 465 PHE B 170 REMARK 465 ILE B 171 REMARK 465 ASP B 172 REMARK 465 ARG B 173 REMARK 465 GLU B 174 REMARK 465 GLU B 175 REMARK 465 PHE B 176 REMARK 465 GLY B 177 REMARK 465 GLY B 178 REMARK 465 ILE B 179 REMARK 465 ILE B 180 REMARK 465 ARG B 181 REMARK 465 LEU B 182 REMARK 465 THR B 183 REMARK 465 GLY B 184 REMARK 465 GLU B 185 REMARK 465 GLN B 186 REMARK 465 LEU B 187 REMARK 465 THR B 188 REMARK 465 ASP B 189 REMARK 465 GLU B 190 REMARK 465 ASP B 191 REMARK 465 SER B 192 REMARK 465 ASP B 193 REMARK 465 GLU B 194 REMARK 465 ILE B 195 REMARK 465 PHE B 196 REMARK 465 GLY B 197 REMARK 465 ASP B 198 REMARK 465 SER B 199 REMARK 465 ASP B 200 REMARK 465 THR B 201 REMARK 465 ASP B 202 REMARK 465 LYS B 203 REMARK 465 ASN B 204 REMARK 465 GLY B 205 REMARK 465 ARG B 206 REMARK 465 ILE B 207 REMARK 465 THR B 307 REMARK 465 HIS B 308 REMARK 465 GLY B 309 REMARK 465 MET B 310 REMARK 465 ASP B 311 REMARK 465 GLU B 312 REMARK 465 LEU B 313 REMARK 465 TYR B 314 REMARK 465 LYS B 315 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 SER D 3 REMARK 465 MET D 4 REMARK 465 VAL D 5 REMARK 465 GLU D 154 REMARK 465 GLU D 155 REMARK 465 LEU D 156 REMARK 465 THR D 157 REMARK 465 GLU D 158 REMARK 465 SER D 159 REMARK 465 PHE D 160 REMARK 465 ARG D 161 REMARK 465 THR D 162 REMARK 465 PHE D 163 REMARK 465 ASP D 164 REMARK 465 LYS D 165 REMARK 465 ASP D 166 REMARK 465 GLY D 167 REMARK 465 ASP D 168 REMARK 465 GLY D 169 REMARK 465 PHE D 170 REMARK 465 ILE D 171 REMARK 465 ASP D 172 REMARK 465 ARG D 173 REMARK 465 GLU D 174 REMARK 465 GLU D 175 REMARK 465 PHE D 176 REMARK 465 GLY D 177 REMARK 465 GLY D 178 REMARK 465 ILE D 179 REMARK 465 ILE D 180 REMARK 465 ARG D 181 REMARK 465 LEU D 182 REMARK 465 THR D 183 REMARK 465 GLY D 184 REMARK 465 GLU D 185 REMARK 465 GLN D 186 REMARK 465 LEU D 187 REMARK 465 THR D 188 REMARK 465 ASP D 189 REMARK 465 GLU D 190 REMARK 465 ASP D 191 REMARK 465 SER D 192 REMARK 465 ASP D 193 REMARK 465 GLU D 194 REMARK 465 ILE D 195 REMARK 465 PHE D 196 REMARK 465 GLY D 197 REMARK 465 ASP D 198 REMARK 465 SER D 199 REMARK 465 ASP D 200 REMARK 465 THR D 201 REMARK 465 ASP D 202 REMARK 465 LYS D 203 REMARK 465 ASN D 204 REMARK 465 GLY D 205 REMARK 465 ARG D 206 REMARK 465 ILE D 306 REMARK 465 THR D 307 REMARK 465 HIS D 308 REMARK 465 GLY D 309 REMARK 465 MET D 310 REMARK 465 ASP D 311 REMARK 465 GLU D 312 REMARK 465 LEU D 313 REMARK 465 TYR D 314 REMARK 465 LYS D 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 5 CG1 CG2 REMARK 470 CRO B 70 CB1 CG1 OG1 REMARK 470 SER B 152 OG REMARK 470 LYS B 233 CE NZ REMARK 470 LYS B 235 CE NZ REMARK 470 ILE B 306 CG1 CG2 CD1 REMARK 470 GLU D 9 CG CD OE1 OE2 REMARK 470 CRO D 70 CB1 CG1 OG1 REMARK 470 LYS D 130 CD CE NZ REMARK 470 SER D 152 OG REMARK 470 GLU D 153 CG CD OE1 OE2 REMARK 470 ILE D 207 CG1 CG2 CD1 REMARK 470 LYS D 233 CG CD CE NZ REMARK 470 GLN D 234 CG CD OE1 NE2 REMARK 470 ARG D 245 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR D 43 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR D 43 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 220 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 107 -156.92 -150.65 REMARK 500 ILE B 140 -66.23 -90.37 REMARK 500 ASP D 107 -151.96 -148.55 REMARK 500 ILE D 140 -65.91 -92.13 REMARK 500 LEU D 151 152.74 54.07 REMARK 500 ASP D 232 74.84 -106.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 126 0.09 SIDE CHAIN REMARK 500 ARG D 279 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8P6G B 0 315 PDB 8P6G 8P6G 0 315 DBREF 8P6G D 0 315 PDB 8P6G 8P6G 0 315 SEQRES 1 B 314 HIS MET ARG SER MET VAL SER LYS GLY GLU GLU LEU PHE SEQRES 2 B 314 THR GLY VAL VAL PRO ILE LEU VAL GLU MET VAL GLY ASP SEQRES 3 B 314 VAL ASN GLY HIS ARG PHE SER VAL SER GLY GLU GLY GLU SEQRES 4 B 314 GLY ILE ALA THR TYR GLY MET LEU THR LEU LYS LEU ILE SEQRES 5 B 314 CYS THR THR GLY GLU LEU PRO VAL PRO TRP PRO THR LEU SEQRES 6 B 314 VAL THR THR LEU CRO MET ALA CYS PHE ALA ARG TYR PRO SEQRES 7 B 314 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET SEQRES 8 B 314 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS SEQRES 9 B 314 ASP ASP GLY TYR TYR LYS THR ARG ALA GLU VAL LYS PHE SEQRES 10 B 314 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY SEQRES 11 B 314 PHE ASP PHE ARG GLU ASP GLY ASN ILE LEU GLY HIS LYS SEQRES 12 B 314 LEU GLY TYR ASN PHE ASP LEU SER GLU GLU GLU LEU THR SEQRES 13 B 314 GLU SER PHE ARG THR PHE ASP LYS ASP GLY ASP GLY PHE SEQRES 14 B 314 ILE ASP ARG GLU GLU PHE GLY GLY ILE ILE ARG LEU THR SEQRES 15 B 314 GLY GLU GLN LEU THR ASP GLU ASP SER ASP GLU ILE PHE SEQRES 16 B 314 GLY ASP SER ASP THR ASP LYS ASN GLY ARG ILE ASP PHE SEQRES 17 B 314 GLY GLU PHE LEU LYS MET VAL GLU ASN VAL ARG GLY ILE SEQRES 18 B 314 ASN SER HIS SER VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 19 B 314 ASN GLY VAL LYS ALA HIS PHE GLU ILE ARG HIS ASN LEU SEQRES 20 B 314 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 21 B 314 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 22 B 314 ASN HIS TYR LEU ARG HIS GLN SER ALA LEU SER LYS ASP SEQRES 23 B 314 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU GLN GLU PHE SEQRES 24 B 314 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 25 B 314 TYR LYS SEQRES 1 D 314 HIS MET ARG SER MET VAL SER LYS GLY GLU GLU LEU PHE SEQRES 2 D 314 THR GLY VAL VAL PRO ILE LEU VAL GLU MET VAL GLY ASP SEQRES 3 D 314 VAL ASN GLY HIS ARG PHE SER VAL SER GLY GLU GLY GLU SEQRES 4 D 314 GLY ILE ALA THR TYR GLY MET LEU THR LEU LYS LEU ILE SEQRES 5 D 314 CYS THR THR GLY GLU LEU PRO VAL PRO TRP PRO THR LEU SEQRES 6 D 314 VAL THR THR LEU CRO MET ALA CYS PHE ALA ARG TYR PRO SEQRES 7 D 314 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET SEQRES 8 D 314 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS SEQRES 9 D 314 ASP ASP GLY TYR TYR LYS THR ARG ALA GLU VAL LYS PHE SEQRES 10 D 314 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY SEQRES 11 D 314 PHE ASP PHE ARG GLU ASP GLY ASN ILE LEU GLY HIS LYS SEQRES 12 D 314 LEU GLY TYR ASN PHE ASP LEU SER GLU GLU GLU LEU THR SEQRES 13 D 314 GLU SER PHE ARG THR PHE ASP LYS ASP GLY ASP GLY PHE SEQRES 14 D 314 ILE ASP ARG GLU GLU PHE GLY GLY ILE ILE ARG LEU THR SEQRES 15 D 314 GLY GLU GLN LEU THR ASP GLU ASP SER ASP GLU ILE PHE SEQRES 16 D 314 GLY ASP SER ASP THR ASP LYS ASN GLY ARG ILE ASP PHE SEQRES 17 D 314 GLY GLU PHE LEU LYS MET VAL GLU ASN VAL ARG GLY ILE SEQRES 18 D 314 ASN SER HIS SER VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 19 D 314 ASN GLY VAL LYS ALA HIS PHE GLU ILE ARG HIS ASN LEU SEQRES 20 D 314 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 21 D 314 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 22 D 314 ASN HIS TYR LEU ARG HIS GLN SER ALA LEU SER LYS ASP SEQRES 23 D 314 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU GLN GLU PHE SEQRES 24 D 314 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 25 D 314 TYR LYS HET CRO B 70 19 HET CRO D 70 19 HET PEG B 401 7 HET PEG D 401 7 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 HOH *214(H2 O) HELIX 1 AA1 GLU B 9 THR B 13 5 5 HELIX 2 AA2 ALA B 41 TYR B 43 5 3 HELIX 3 AA3 PRO B 60 VAL B 65 5 6 HELIX 4 AA4 MET B 72 ALA B 76 5 5 HELIX 5 AA5 PRO B 79 HIS B 85 5 7 HELIX 6 AA6 ASP B 86 ALA B 91 1 6 HELIX 7 AA7 PHE B 209 ASN B 218 1 10 HELIX 8 AA8 GLY D 8 THR D 13 5 6 HELIX 9 AA9 PRO D 60 VAL D 65 5 6 HELIX 10 AB1 MET D 72 ALA D 76 5 5 HELIX 11 AB2 PRO D 79 HIS D 85 5 7 HELIX 12 AB3 ASP D 86 ALA D 91 1 6 HELIX 13 AB4 ASP D 208 ASN D 218 1 11 HELIX 14 AB5 LYS D 233 ASN D 236 5 4 SHEET 1 AA112 VAL B 16 VAL B 26 0 SHEET 2 AA112 HIS B 29 ILE B 40 -1 O GLY B 35 N VAL B 20 SHEET 3 AA112 MET B 45 CYS B 52 -1 O MET B 45 N ILE B 40 SHEET 4 AA112 HIS B 294 ALA B 304 -1 O MET B 295 N LEU B 50 SHEET 5 AA112 HIS B 276 SER B 285 -1 N ARG B 279 O THR B 302 SHEET 6 AA112 HIS B 225 ASP B 232 -1 N ILE B 229 O HIS B 276 SHEET 7 AA112 GLY B 237 ASN B 247 -1 O LYS B 239 N THR B 230 SHEET 8 AA112 VAL B 253 PRO B 264 -1 O HIS B 258 N PHE B 242 SHEET 9 AA112 TYR B 96 PHE B 104 -1 N GLU B 99 O GLN B 261 SHEET 10 AA112 TYR B 109 GLU B 119 -1 O THR B 112 N ARG B 100 SHEET 11 AA112 THR B 122 PHE B 132 -1 O GLU B 128 N ARG B 113 SHEET 12 AA112 VAL B 16 VAL B 26 1 N GLU B 21 O ILE B 127 SHEET 1 AA212 VAL D 16 VAL D 26 0 SHEET 2 AA212 HIS D 29 ILE D 40 -1 O GLY D 35 N VAL D 20 SHEET 3 AA212 MET D 45 CYS D 52 -1 O ILE D 51 N SER D 34 SHEET 4 AA212 HIS D 294 ALA D 304 -1 O MET D 295 N LEU D 50 SHEET 5 AA212 HIS D 276 SER D 285 -1 N GLN D 281 O PHE D 300 SHEET 6 AA212 HIS D 225 ASP D 232 -1 N HIS D 225 O HIS D 280 SHEET 7 AA212 GLY D 237 ASN D 247 -1 O GLY D 237 N ASP D 232 SHEET 8 AA212 VAL D 253 PRO D 264 -1 O HIS D 258 N PHE D 242 SHEET 9 AA212 TYR D 96 PHE D 104 -1 N VAL D 97 O THR D 263 SHEET 10 AA212 TYR D 109 GLU D 119 -1 O VAL D 116 N TYR D 96 SHEET 11 AA212 THR D 122 PHE D 132 -1 O GLU D 128 N ARG D 113 SHEET 12 AA212 VAL D 16 VAL D 26 1 N GLU D 21 O ILE D 127 LINK C LEU B 68 N1 CRO B 70 1555 1555 1.36 LINK C3 CRO B 70 N MET B 72 1555 1555 1.35 LINK C LEU D 68 N1 CRO D 70 1555 1555 1.35 LINK C3 CRO D 70 N MET D 72 1555 1555 1.36 CISPEP 1 MET B 92 PRO B 93 0 6.33 CISPEP 2 MET D 92 PRO D 93 0 5.84 CRYST1 65.736 65.736 315.036 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015212 0.008783 0.000000 0.00000 SCALE2 0.000000 0.017566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003174 0.00000