HEADER OXIDOREDUCTASE 30-MAY-23 8P7O TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND AAD-CYS-[(S)-1-AMINO- TITLE 2 2-METHYLPROPANE-1-SULFONIC ACID] COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD_IPNS KEYWDS ISOPENICILLIN N SYNTHASE, PENICILLINS, BIOSYNTHESIS, 2OG OXYGENASES, KEYWDS 2 ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 12-JUN-24 8P7O 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND JRNL TITL 2 AAD-CYS-[(S)-1-AMINO-2-METHYLPROPANE-1-SULFONIC ACID] JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.9300 - 4.0000 1.00 2776 119 0.1672 0.1805 REMARK 3 2 4.0000 - 3.1700 1.00 2602 138 0.1524 0.1774 REMARK 3 3 3.1700 - 2.7700 1.00 2594 136 0.1868 0.1926 REMARK 3 4 2.7700 - 2.5200 1.00 2570 135 0.1927 0.2251 REMARK 3 5 2.5200 - 2.3400 1.00 2530 155 0.1964 0.2234 REMARK 3 6 2.3400 - 2.2000 1.00 2526 131 0.1974 0.2462 REMARK 3 7 2.2000 - 2.0900 1.00 2576 117 0.1987 0.2482 REMARK 3 8 2.0900 - 2.0000 1.00 2531 141 0.2061 0.2668 REMARK 3 9 2.0000 - 1.9200 1.00 2529 120 0.2283 0.2508 REMARK 3 10 1.9200 - 1.8600 1.00 2501 134 0.2539 0.2439 REMARK 3 11 1.8600 - 1.8000 1.00 2522 134 0.2780 0.3100 REMARK 3 12 1.8000 - 1.7500 1.00 2482 172 0.2911 0.3317 REMARK 3 13 1.7500 - 1.7000 1.00 2506 127 0.3164 0.3704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.196 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2966 REMARK 3 ANGLE : 0.527 4064 REMARK 3 CHIRALITY : 0.044 427 REMARK 3 PLANARITY : 0.004 543 REMARK 3 DIHEDRAL : 11.881 1060 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7139 -4.5779 14.5506 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1563 REMARK 3 T33: 0.1271 T12: -0.0117 REMARK 3 T13: 0.0110 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.5163 L22: 1.9005 REMARK 3 L33: 1.9520 L12: -0.2973 REMARK 3 L13: -0.0066 L23: 0.3634 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.1062 S13: -0.1195 REMARK 3 S21: 0.1372 S22: -0.0038 S23: 0.0397 REMARK 3 S31: 0.1095 S32: -0.0984 S33: 0.0304 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3885 1.7142 -2.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1478 REMARK 3 T33: 0.1303 T12: -0.0033 REMARK 3 T13: -0.0202 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.1765 L22: 0.9228 REMARK 3 L33: 0.3503 L12: -0.3106 REMARK 3 L13: -0.0788 L23: 0.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: 0.0318 S13: -0.0839 REMARK 3 S21: -0.1344 S22: 0.0253 S23: 0.2327 REMARK 3 S31: 0.0102 S32: -0.0856 S33: -0.0480 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2603 6.1568 -23.3707 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.1381 REMARK 3 T33: 0.1639 T12: 0.0073 REMARK 3 T13: -0.0200 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 5.2776 L22: 2.6933 REMARK 3 L33: 2.5136 L12: 0.6905 REMARK 3 L13: -1.8200 L23: -0.4148 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: 0.3728 S13: 0.0606 REMARK 3 S21: -0.1204 S22: -0.0331 S23: 0.3141 REMARK 3 S31: -0.3111 S32: -0.0623 S33: -0.0557 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7008 6.4576 -15.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1125 REMARK 3 T33: 0.0975 T12: -0.0026 REMARK 3 T13: 0.0057 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.0726 L22: 1.8271 REMARK 3 L33: 2.0636 L12: 0.2887 REMARK 3 L13: 0.2680 L23: 0.6487 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: 0.1496 S13: 0.0522 REMARK 3 S21: -0.3043 S22: 0.0964 S23: 0.0509 REMARK 3 S31: -0.2207 S32: 0.1760 S33: 0.0085 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3212 15.4950 -12.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.1279 REMARK 3 T33: 0.1156 T12: -0.0223 REMARK 3 T13: 0.0057 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 2.6049 L22: 0.8941 REMARK 3 L33: 1.7538 L12: 0.3494 REMARK 3 L13: 0.3239 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: 0.3792 S13: 0.1953 REMARK 3 S21: -0.0600 S22: 0.0784 S23: 0.0133 REMARK 3 S31: -0.3556 S32: 0.0957 S33: 0.0481 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5093 9.0504 2.9272 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1046 REMARK 3 T33: 0.1347 T12: -0.0029 REMARK 3 T13: 0.0186 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.1258 L22: 0.9851 REMARK 3 L33: 3.3339 L12: -0.4604 REMARK 3 L13: 1.1474 L23: -0.6392 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.0490 S13: 0.1362 REMARK 3 S21: -0.0591 S22: -0.0420 S23: 0.0170 REMARK 3 S31: -0.1813 S32: -0.1941 S33: 0.0539 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8529 10.4587 9.5407 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1405 REMARK 3 T33: 0.1411 T12: -0.0193 REMARK 3 T13: 0.0025 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.6114 L22: 0.9089 REMARK 3 L33: 6.5653 L12: 0.1701 REMARK 3 L13: 0.2664 L23: -1.5511 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: -0.0671 S13: 0.0334 REMARK 3 S21: 0.0919 S22: -0.0700 S23: -0.0321 REMARK 3 S31: -0.5381 S32: 0.4812 S33: 0.0427 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2923 -8.5256 -3.8982 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1244 REMARK 3 T33: 0.1332 T12: 0.0050 REMARK 3 T13: 0.0119 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.1135 L22: 1.1067 REMARK 3 L33: 1.8704 L12: 0.0889 REMARK 3 L13: 0.5240 L23: 0.1287 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: -0.0174 S13: -0.0945 REMARK 3 S21: -0.0391 S22: -0.0352 S23: 0.0501 REMARK 3 S31: 0.1174 S32: -0.0475 S33: -0.0194 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2502 2.1258 10.3617 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.3532 REMARK 3 T33: 0.2112 T12: -0.0279 REMARK 3 T13: -0.0230 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 1.2261 L22: 0.6194 REMARK 3 L33: 1.4219 L12: -0.0644 REMARK 3 L13: 0.1255 L23: -0.2330 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.0935 S13: -0.0595 REMARK 3 S21: 0.0907 S22: -0.1871 S23: -0.2240 REMARK 3 S31: 0.0458 S32: 0.7634 S33: 0.1525 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2196 -1.0299 -8.4536 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.2375 REMARK 3 T33: 0.1809 T12: 0.0048 REMARK 3 T13: 0.0234 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.7004 L22: 2.0693 REMARK 3 L33: 3.4319 L12: 0.2630 REMARK 3 L13: 0.8964 L23: 2.4364 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: 0.0456 S13: -0.1150 REMARK 3 S21: -0.3420 S22: 0.1716 S23: -0.0819 REMARK 3 S31: -0.0429 S32: 0.3051 S33: -0.0616 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 59.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.37100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 3.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 4 UM X 4 UM X 180 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.3, BATCH REMARK 280 MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.62950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.49700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.22950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.49700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.62950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.22950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 56 CB CG CD OE1 NE2 REMARK 470 LYS A 57 NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 305 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 225 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -110.60 -97.08 REMARK 500 HIS A 82 58.78 -109.66 REMARK 500 LEU A 106 -168.49 -114.62 REMARK 500 THR A 123 -5.97 75.68 REMARK 500 ASN A 230 -26.39 -156.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 94.6 REMARK 620 3 HIS A 270 NE2 86.3 85.0 REMARK 620 4 X5L A 404 S 92.3 87.4 172.1 REMARK 620 5 HOH A 523 O 175.5 88.1 90.3 91.4 REMARK 620 6 HOH A 704 O 92.9 172.3 93.7 94.1 84.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAP RELATED DB: PDB DBREF 8P7O A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET FE A 403 1 HET X5L A 404 25 HET SO4 A 405 5 HETNAM SO4 SULFATE ION HETNAM FE FE (III) ION HETNAM X5L (2~{S})-2-AZANYL-6-[[(2~{R})-1-[[(1~{S})-2-METHYL-1- HETNAM 2 X5L SULFO-PROPYL]AMINO]-1-OXIDANYLIDENE-3-SULFANYL-PROPAN- HETNAM 3 X5L 2-YL]AMINO]-6-OXIDANYLIDENE-HEXANOIC ACID FORMUL 2 SO4 3(O4 S 2-) FORMUL 4 FE FE 3+ FORMUL 5 X5L C13 H25 N3 O7 S2 FORMUL 7 HOH *378(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 MET A 63 1 14 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 TYR A 313 GLY A 329 1 17 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N GLU A 101 O ARG A 188 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 SHEET 1 AA3 2 VAL A 293 ILE A 294 0 SHEET 2 AA3 2 LEU A 311 SER A 312 -1 O LEU A 311 N ILE A 294 LINK NE2 HIS A 214 FE FE A 403 1555 1555 2.19 LINK OD1 ASP A 216 FE FE A 403 1555 1555 2.11 LINK NE2 HIS A 270 FE FE A 403 1555 1555 2.25 LINK FE FE A 403 S X5L A 404 1555 1555 2.37 LINK FE FE A 403 O HOH A 523 1555 1555 2.21 LINK FE FE A 403 O HOH A 704 1555 1555 2.10 CISPEP 1 ASP A 193 PRO A 194 0 0.17 CRYST1 41.259 74.459 100.994 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009902 0.00000