HEADER HYDROLASE 31-MAY-23 8P7U TITLE THE IMPACT OF MOLECULAR VARIANTS, CRYSTALLIZATION CONDITIONS AND SPACE TITLE 2 GROUP ON STRUCTURE-LIGAND COMPLEXES: A CASE STUDY ON BACTERIAL TITLE 3 PHOSPHOTRIESTERASE VARIANTS AND COMPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOTRIESTERASE,PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 GENE: OPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,N.AGGARWAL,Y.ASHANI,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN, AUTHOR 2 J.L.SUSSMAN REVDAT 3 08-NOV-23 8P7U 1 JRNL REVDAT 2 01-NOV-23 8P7U 1 JRNL REVDAT 1 25-OCT-23 8P7U 0 SPRSDE 25-OCT-23 8P7U 6G23 JRNL AUTH O.DYM,N.AGGARWAL,Y.ASHANI,H.LEADER,S.ALBECK,T.UNGER, JRNL AUTH 2 S.HAMER-ROGOTNER,I.SILMAN,D.S.TAWFIK,J.L.SUSSMAN JRNL TITL THE IMPACT OF MOLECULAR VARIANTS, CRYSTALLIZATION CONDITIONS JRNL TITL 2 AND THE SPACE GROUP ON LIGAND-PROTEIN COMPLEXES: A CASE JRNL TITL 3 STUDY ON BACTERIAL PHOSPHOTRIESTERASE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 992 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37860961 JRNL DOI 10.1107/S2059798323007672 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 95540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.2576 0.99 3326 175 0.1493 0.1493 REMARK 3 2 4.2576 - 3.3866 1.00 3195 148 0.1469 0.1629 REMARK 3 3 3.3866 - 2.9606 1.00 3147 158 0.1737 0.1805 REMARK 3 4 2.9606 - 2.6909 1.00 3081 166 0.1795 0.1877 REMARK 3 5 2.6909 - 2.4985 0.99 3086 156 0.1733 0.1952 REMARK 3 6 2.4985 - 2.3516 1.00 3051 166 0.1708 0.1776 REMARK 3 7 2.3516 - 2.2340 1.00 3065 148 0.1623 0.1623 REMARK 3 8 2.2340 - 2.1369 1.00 3040 165 0.1613 0.1892 REMARK 3 9 2.1369 - 2.0548 0.99 3054 135 0.1480 0.1484 REMARK 3 10 2.0548 - 1.9840 0.99 3026 166 0.1623 0.1623 REMARK 3 11 1.9840 - 1.9220 0.99 3015 151 0.1689 0.1753 REMARK 3 12 1.9220 - 1.8671 0.99 3030 163 0.1672 0.1682 REMARK 3 13 1.8671 - 1.8180 0.99 3020 155 0.1675 0.1819 REMARK 3 14 1.8180 - 1.7737 0.99 3002 161 0.1641 0.1959 REMARK 3 15 1.7737 - 1.7334 0.99 2986 172 0.1726 0.1799 REMARK 3 16 1.7334 - 1.6965 0.99 3002 151 0.1730 0.1956 REMARK 3 17 1.6965 - 1.6626 0.99 3002 140 0.1862 0.1979 REMARK 3 18 1.6626 - 1.6313 0.99 3018 153 0.1801 0.2003 REMARK 3 19 1.6313 - 1.6022 0.99 2999 151 0.1817 0.1842 REMARK 3 20 1.6022 - 1.5750 0.99 2982 155 0.1858 0.2036 REMARK 3 21 1.5750 - 1.5496 0.99 3006 137 0.1787 0.2100 REMARK 3 22 1.5496 - 1.5258 0.99 3005 158 0.1835 0.1916 REMARK 3 23 1.5258 - 1.5034 0.99 2965 154 0.1933 0.2045 REMARK 3 24 1.5034 - 1.4822 0.99 2944 176 0.2044 0.2224 REMARK 3 25 1.4822 - 1.4622 0.99 3000 164 0.2058 0.2173 REMARK 3 26 1.4622 - 1.4432 0.99 2962 144 0.2089 0.2291 REMARK 3 27 1.4432 - 1.4252 0.99 2965 159 0.2212 0.2477 REMARK 3 28 1.4252 - 1.4080 0.99 2946 160 0.2309 0.2913 REMARK 3 29 1.4080 - 1.3916 0.99 2960 141 0.2486 0.2486 REMARK 3 30 1.3916 - 1.3800 0.99 2976 156 0.2688 0.2936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2597 REMARK 3 ANGLE : 1.018 3534 REMARK 3 CHIRALITY : 0.081 418 REMARK 3 PLANARITY : 0.006 453 REMARK 3 DIHEDRAL : 9.841 1477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.27242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.376 REMARK 200 RESOLUTION RANGE LOW (A) : 18.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M (NH4)2SO4 12% GLYCEROL 0.1M TRIS REMARK 280 PH=8.0, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.53500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.84500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.30250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.84500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.76750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.84500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.30250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.84500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.76750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.53500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 ARG A 85 CZ NH1 NH2 REMARK 470 ARG A 89 CZ NH1 NH2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ASP A 264 CG OD1 OD2 REMARK 470 GLU A 338 CD OE1 OE2 REMARK 470 ASN A 343 OD1 ND2 REMARK 470 GLU A 344 CD OE1 OE2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 345 CAE E8N A 407 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 159 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -152.38 -143.91 REMARK 500 TRP A 69 59.88 -145.53 REMARK 500 THR A 128 -169.82 -108.94 REMARK 500 TRP A 131 -156.91 -94.70 REMARK 500 GLU A 159 -89.31 -9.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 158 GLU A 159 -137.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 120.3 REMARK 620 3 ASP A 301 OD1 83.8 90.0 REMARK 620 4 FMT A 401 O1 97.0 89.2 179.1 REMARK 620 5 X3T A 404 O01 110.2 128.9 88.0 92.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 ND1 REMARK 620 2 HIS A 230 NE2 98.9 REMARK 620 3 FMT A 401 O2 103.8 111.5 REMARK 620 4 X3T A 404 O01 156.9 88.7 93.4 REMARK 620 5 X3T A 404 O03 97.9 125.3 114.1 60.5 REMARK 620 N 1 2 3 4 DBREF 8P7U A 34 364 UNP P0A434 OPD_BREDI 34 364 SEQADV 8P7U ALA A 77 UNP P0A434 LYS 77 CONFLICT SEQADV 8P7U VAL A 80 UNP P0A434 ALA 80 CONFLICT SEQADV 8P7U GLU A 132 UNP P0A434 PHE 132 CONFLICT SEQADV 8P7U ASN A 173 UNP P0A434 THR 173 CONFLICT SEQADV 8P7U ARG A 185 UNP P0A434 LYS 185 CONFLICT SEQADV 8P7U LEU A 203 UNP P0A434 ALA 203 CONFLICT SEQADV 8P7U GLY A 254 UNP P0A434 HIS 254 CONFLICT SEQADV 8P7U ASN A 274 UNP P0A434 ILE 274 CONFLICT SEQADV 8P7U SER A 319 UNP P0A434 ARG 319 CONFLICT SEQADV 8P7U SER A 342 UNP P0A434 PRO 342 CONFLICT SEQADV 8P7U ASN A 343 UNP P0A434 GLN 343 CONFLICT SEQRES 1 A 331 GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SEQRES 2 A 331 SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS SEQRES 3 A 331 GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE SEQRES 4 A 331 PHE GLY SER ARG ALA ALA LEU VAL GLU LYS ALA VAL ARG SEQRES 5 A 331 GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE SEQRES 6 A 331 VAL ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER SEQRES 7 A 331 LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE SEQRES 8 A 331 VAL ALA ALA THR GLY LEU TRP GLU ASP PRO PRO LEU SER SEQRES 9 A 331 MET ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE SEQRES 10 A 331 LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE SEQRES 11 A 331 ARG ALA GLY ILE ILE LYS VAL ALA THR ASN GLY LYS ALA SEQRES 12 A 331 THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA ARG SEQRES 13 A 331 ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR SEQRES 14 A 331 LEU ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE SEQRES 15 A 331 PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE SEQRES 16 A 331 GLY HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR SEQRES 17 A 331 ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP GLY SEQRES 18 A 331 ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER SEQRES 19 A 331 ALA SER ALA LEU LEU GLY ASN ARG SER TRP GLN THR ARG SEQRES 20 A 331 ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET SEQRES 21 A 331 LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SEQRES 22 A 331 SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP SER SEQRES 23 A 331 VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL SEQRES 24 A 331 ILE PRO PHE LEU ARG GLU LYS GLY VAL SER ASN GLU THR SEQRES 25 A 331 LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SEQRES 26 A 331 SER PRO THR LEU ARG ALA HET FMT A 401 3 HET ZN A 402 1 HET ZN A 403 1 HET X3T A 404 8 HET GOL A 405 6 HET GOL A 406 6 HET E8N A 407 9 HET SO4 A 408 5 HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETNAM X3T CYCLOHEXA-2,5-DIENE-1,1-DIOL HETNAM GOL GLYCEROL HETNAM E8N 1-ETHYL-1-METHYL-CYCLOHEXANE HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMT C H2 O2 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 X3T C6 H8 O2 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 E8N C9 H18 FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *362(H2 O) HELIX 1 AA1 ILE A 46 GLY A 50 1 5 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 LEU A 203 GLN A 206 5 4 HELIX 11 AB2 ARG A 207 GLU A 219 1 13 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ASN A 265 GLY A 273 1 9 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 SER A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O VAL A 125 N ASP A 100 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 GLY A 129 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O LYS A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N VAL A 226 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 LINK NZ LYS A 169 C FMT A 401 1555 1555 1.43 LINK NE2 HIS A 55 ZN ZN A 402 1555 1555 2.07 LINK NE2 HIS A 57 ZN ZN A 402 1555 1555 2.03 LINK ND1 HIS A 201 ZN ZN A 403 1555 1555 2.10 LINK NE2 HIS A 230 ZN ZN A 403 1555 1555 2.02 LINK OD1 ASP A 301 ZN ZN A 402 1555 1555 2.21 LINK O1 FMT A 401 ZN ZN A 402 1555 1555 2.12 LINK O2 FMT A 401 ZN ZN A 403 1555 1555 1.95 LINK ZN ZN A 402 O01 X3T A 404 1555 1555 1.96 LINK ZN ZN A 403 O01 X3T A 404 1555 1555 2.67 LINK ZN ZN A 403 O03 X3T A 404 1555 1555 2.01 CRYST1 69.690 69.690 187.070 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005346 0.00000