HEADER IMMUNE SYSTEM 31-MAY-23 8P88 TITLE X-RAY STRUCTURE OF CARDIOTOXIC LIGHT CHAIN H3 IN COMPLEX TO TITLE 2 NEUTRALIZING NANOBODY C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN H3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY C4; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 8 ORGANISM_TAXID: 9844; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AL AMYLOIDOSIS, TOXICITY, NEUTRALIZATION, NANOBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.BROGGINI,S.RICAGNO REVDAT 2 07-FEB-24 8P88 1 JRNL REVDAT 1 31-JAN-24 8P88 0 JRNL AUTH L.BROGGINI,M.M.BARZAGO,V.SPERANZINI,T.SCHULTE,F.SONZINI, JRNL AUTH 2 M.GIONO,M.ROMEO,P.MILANI,S.CAMINITO,G.MAZZINI,P.ROGNONI, JRNL AUTH 3 G.MERLINI,C.PAPPONE,L.ANASTASIA,M.NUVOLONE,G.PALLADINI, JRNL AUTH 4 L.DIOMEDE,S.RICAGNO JRNL TITL NANOBODIES COUNTERACT THE TOXICITY OF AN AMYLOIDOGENIC LIGHT JRNL TITL 2 CHAIN BY STABILIZING A PARTIALLY OPEN DIMERIC CONFORMATION. JRNL REF J.MOL.BIOL. V. 435 68320 2023 JRNL REFN ESSN 1089-8638 JRNL PMID 37865287 JRNL DOI 10.1016/J.JMB.2023.168320 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.6 REMARK 3 NUMBER OF REFLECTIONS : 21041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.8707 - 3.8674 1.00 1733 195 0.1511 0.1539 REMARK 3 2 3.8674 - 3.3789 1.00 1716 182 0.1934 0.2134 REMARK 3 3 3.3789 - 3.0701 1.00 1711 175 0.2285 0.2365 REMARK 3 4 3.0701 - 2.8502 1.00 1703 180 0.2519 0.2769 REMARK 3 5 2.8502 - 2.6822 1.00 1722 175 0.2666 0.3210 REMARK 3 6 2.6822 - 2.5479 1.00 1692 172 0.2952 0.3170 REMARK 3 7 2.5479 - 2.4370 0.99 1708 169 0.3108 0.3386 REMARK 3 8 2.4370 - 2.3432 0.94 1583 176 0.3107 0.3641 REMARK 3 9 2.3432 - 2.2623 0.79 1326 138 0.3241 0.3410 REMARK 3 10 2.2623 - 2.1916 0.60 1028 103 0.3509 0.3713 REMARK 3 11 2.1916 - 2.1290 0.40 680 67 0.3504 0.4285 REMARK 3 12 2.1290 - 2.0729 0.24 410 41 0.3901 0.4751 REMARK 3 13 2.0729 - 2.0224 0.13 216 25 0.4041 0.4518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2599 REMARK 3 ANGLE : 0.605 3574 REMARK 3 CHIRALITY : 0.047 414 REMARK 3 PLANARITY : 0.004 469 REMARK 3 DIHEDRAL : 4.562 2058 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1744 36.3767 2.0290 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.3470 REMARK 3 T33: 0.5476 T12: 0.0214 REMARK 3 T13: 0.1195 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 2.9553 L22: 0.7895 REMARK 3 L33: 3.4597 L12: -0.5752 REMARK 3 L13: 2.2142 L23: 0.8114 REMARK 3 S TENSOR REMARK 3 S11: 0.3822 S12: 0.6991 S13: 0.0789 REMARK 3 S21: -0.0008 S22: -0.0839 S23: -0.3543 REMARK 3 S31: 0.1378 S32: 0.7355 S33: -0.1026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3189 44.1210 0.5902 REMARK 3 T TENSOR REMARK 3 T11: 0.3086 T22: 0.2630 REMARK 3 T33: 0.5008 T12: -0.0057 REMARK 3 T13: 0.0669 T23: 0.0956 REMARK 3 L TENSOR REMARK 3 L11: 6.4664 L22: 3.7258 REMARK 3 L33: 1.8450 L12: -1.1145 REMARK 3 L13: 0.4434 L23: -0.8246 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: 0.4038 S13: 0.7494 REMARK 3 S21: -0.2786 S22: -0.1811 S23: -0.9587 REMARK 3 S31: -0.4641 S32: 0.3626 S33: 0.2080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0466 18.1198 16.8969 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.2607 REMARK 3 T33: 0.1514 T12: -0.0013 REMARK 3 T13: 0.0207 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 2.7214 L22: 1.9571 REMARK 3 L33: 1.3519 L12: 0.0041 REMARK 3 L13: -0.0015 L23: -0.4950 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: -0.2815 S13: 0.0574 REMARK 3 S21: 0.2375 S22: -0.0199 S23: 0.1969 REMARK 3 S31: 0.1268 S32: -0.0111 S33: -0.0599 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7204 16.2691 13.9315 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.3192 REMARK 3 T33: 0.1975 T12: -0.0464 REMARK 3 T13: -0.0079 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.6788 L22: 1.7955 REMARK 3 L33: 2.0857 L12: 0.2661 REMARK 3 L13: -0.5537 L23: -0.6208 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: 0.3028 S13: -0.2224 REMARK 3 S21: -0.2243 S22: 0.1078 S23: 0.1157 REMARK 3 S31: 0.3441 S32: -0.3358 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5478 9.3265 10.0352 REMARK 3 T TENSOR REMARK 3 T11: 0.5234 T22: 0.2241 REMARK 3 T33: 0.2449 T12: -0.0031 REMARK 3 T13: 0.0808 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 0.5779 L22: 2.8119 REMARK 3 L33: 3.8809 L12: -0.9606 REMARK 3 L13: 0.6530 L23: -2.9392 REMARK 3 S TENSOR REMARK 3 S11: 0.2306 S12: -0.3401 S13: -0.0050 REMARK 3 S21: 0.1776 S22: -0.1317 S23: 0.7403 REMARK 3 S31: 0.8788 S32: 0.1514 S33: -0.2059 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6822 51.7508 16.8015 REMARK 3 T TENSOR REMARK 3 T11: 0.4587 T22: 0.3433 REMARK 3 T33: 0.3354 T12: 0.0822 REMARK 3 T13: -0.0390 T23: -0.1158 REMARK 3 L TENSOR REMARK 3 L11: 6.4599 L22: 2.0208 REMARK 3 L33: 6.4941 L12: 6.6867 REMARK 3 L13: -1.8513 L23: -4.8022 REMARK 3 S TENSOR REMARK 3 S11: 0.6569 S12: -0.8996 S13: 0.7878 REMARK 3 S21: 1.8888 S22: -0.5556 S23: 0.0120 REMARK 3 S31: -0.6902 S32: 0.3448 S33: 0.0156 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0874 31.8669 18.3487 REMARK 3 T TENSOR REMARK 3 T11: 0.5086 T22: 0.4656 REMARK 3 T33: 0.4452 T12: 0.0452 REMARK 3 T13: 0.1874 T23: 0.0937 REMARK 3 L TENSOR REMARK 3 L11: 4.2210 L22: 0.3407 REMARK 3 L33: 2.5907 L12: -0.1291 REMARK 3 L13: 2.2046 L23: 0.4629 REMARK 3 S TENSOR REMARK 3 S11: -0.3617 S12: -1.0545 S13: -0.7338 REMARK 3 S21: 0.8300 S22: 0.1720 S23: 0.5961 REMARK 3 S31: 0.1297 S32: -0.3634 S33: 0.0517 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 18 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0185 46.7851 15.5184 REMARK 3 T TENSOR REMARK 3 T11: 0.4460 T22: 0.4125 REMARK 3 T33: 0.2618 T12: 0.1065 REMARK 3 T13: 0.0910 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 5.6584 L22: 9.0004 REMARK 3 L33: 3.8462 L12: 2.0521 REMARK 3 L13: 0.2787 L23: -0.4957 REMARK 3 S TENSOR REMARK 3 S11: -0.2173 S12: -0.6348 S13: -0.1628 REMARK 3 S21: 0.7725 S22: 0.4217 S23: 0.3136 REMARK 3 S31: -0.9335 S32: -0.5124 S33: -0.2144 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3983 58.2232 6.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.5446 T22: 0.2618 REMARK 3 T33: 0.5189 T12: 0.0807 REMARK 3 T13: -0.1020 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 4.1109 L22: 2.2291 REMARK 3 L33: 7.1529 L12: 1.5406 REMARK 3 L13: 0.2227 L23: 3.5478 REMARK 3 S TENSOR REMARK 3 S11: -0.1793 S12: 0.0191 S13: 0.9787 REMARK 3 S21: 0.3596 S22: 0.5360 S23: -0.6482 REMARK 3 S31: -1.4234 S32: -0.0869 S33: -0.3071 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 34 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1701 37.5189 10.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.2457 REMARK 3 T33: 0.2124 T12: 0.0429 REMARK 3 T13: 0.0304 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.3561 L22: 2.6410 REMARK 3 L33: 0.6921 L12: -0.6877 REMARK 3 L13: -0.7363 L23: 0.1766 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -0.1981 S13: -0.1339 REMARK 3 S21: 0.1113 S22: -0.0449 S23: -0.1150 REMARK 3 S31: -0.0791 S32: 0.3642 S33: 0.1262 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 45 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5919 40.1020 4.0739 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1646 REMARK 3 T33: 0.1536 T12: -0.0206 REMARK 3 T13: -0.0108 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.8286 L22: 4.5699 REMARK 3 L33: 5.1094 L12: -0.1855 REMARK 3 L13: 1.3107 L23: -1.2529 REMARK 3 S TENSOR REMARK 3 S11: 0.1577 S12: -0.2884 S13: -0.2738 REMARK 3 S21: -0.3407 S22: -0.2732 S23: 0.1919 REMARK 3 S31: 0.5093 S32: -0.1189 S33: 0.0741 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 52 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3926 42.0328 2.5497 REMARK 3 T TENSOR REMARK 3 T11: 0.1345 T22: 0.2120 REMARK 3 T33: 0.1744 T12: 0.0033 REMARK 3 T13: -0.0286 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.7304 L22: 3.8753 REMARK 3 L33: 4.4856 L12: -0.7147 REMARK 3 L13: -0.2456 L23: 0.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.2433 S13: -0.1313 REMARK 3 S21: -0.2817 S22: -0.2510 S23: 0.2811 REMARK 3 S31: -0.0237 S32: -0.3532 S33: 0.1630 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 74 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2109 47.2851 11.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.3330 REMARK 3 T33: 0.2442 T12: 0.0323 REMARK 3 T13: 0.0256 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 3.3224 L22: 6.0686 REMARK 3 L33: 2.1806 L12: -1.1152 REMARK 3 L13: -0.0251 L23: -0.3739 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.0298 S13: 0.0404 REMARK 3 S21: 1.2492 S22: -0.1780 S23: 0.6105 REMARK 3 S31: -0.5028 S32: -0.5356 S33: 0.2679 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 84 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6389 28.8721 11.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.3763 T22: 0.2532 REMARK 3 T33: 0.3126 T12: -0.0346 REMARK 3 T13: 0.0432 T23: 0.1120 REMARK 3 L TENSOR REMARK 3 L11: 8.2918 L22: 5.3224 REMARK 3 L33: 5.0594 L12: -0.9121 REMARK 3 L13: 0.3028 L23: 0.5873 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: -0.0483 S13: -0.6866 REMARK 3 S21: -0.5259 S22: -0.0787 S23: 0.2289 REMARK 3 S31: 1.0772 S32: -0.3688 S33: 0.2175 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 92 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0886 47.6861 4.3386 REMARK 3 T TENSOR REMARK 3 T11: 0.2779 T22: 0.2204 REMARK 3 T33: 0.2401 T12: -0.0001 REMARK 3 T13: -0.0030 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.9021 L22: 4.3346 REMARK 3 L33: 2.6050 L12: -0.1592 REMARK 3 L13: -0.7826 L23: -0.6331 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.1878 S13: 0.4729 REMARK 3 S21: -0.2721 S22: -0.0055 S23: -0.1049 REMARK 3 S31: -0.5017 S32: 0.0095 S33: -0.1109 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 109 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7265 40.9580 14.3923 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.2480 REMARK 3 T33: 0.2140 T12: 0.0844 REMARK 3 T13: -0.0065 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.9469 L22: 7.1994 REMARK 3 L33: 3.3594 L12: 2.2443 REMARK 3 L13: -1.2194 L23: -1.3311 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.5230 S13: -0.2985 REMARK 3 S21: 0.5846 S22: -0.2560 S23: -0.4727 REMARK 3 S31: -0.0358 S32: 0.1356 S33: 0.2462 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8P88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1292130794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 20% W/V PEG REMARK 280 4000, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.33750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.33750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.79650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.97650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.79650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.97650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.33750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.79650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.97650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.33750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.79650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.97650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.59300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.33750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 372 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLU A 214 REMARK 465 CYS A 215 REMARK 465 SER A 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 57 OG REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 GLN A 80 CG CD OE1 NE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 193 CD CE NZ REMARK 470 GLN C 1 CG CD OE1 NE2 REMARK 470 GLN C 13 CG CD OE1 NE2 REMARK 470 LYS C 43 CE NZ REMARK 470 LYS C 76 CE NZ REMARK 470 LYS C 114 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -81.92 -126.74 REMARK 500 ASN A 52 -55.94 68.35 REMARK 500 ASN A 53 45.16 -148.59 REMARK 500 ASP A 155 -102.62 53.29 REMARK 500 ASP C 66 -4.15 74.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 432 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 433 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 8.30 ANGSTROMS DBREF 8P88 A 1 216 PDB 8P88 8P88 1 216 DBREF 8P88 C 1 121 PDB 8P88 8P88 1 121 SEQRES 1 A 216 GLN SER VAL LEU THR GLN PRO PRO SER THR SER GLY THR SEQRES 2 A 216 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 A 216 SER ASN ILE GLU THR ASN THR VAL ASN TRP TYR GLN GLN SEQRES 4 A 216 LEU PRO GLY THR ALA PRO LYS LEU VAL MET HIS THR ASN SEQRES 5 A 216 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 216 SER ARG SER GLY THR SER ALA SER LEU ALA ILE GLY GLY SEQRES 7 A 216 LEU GLN SER GLU ASP GLU ALA ASP TYR PHE CYS ALA ALA SEQRES 8 A 216 TRP ASP ASP ASN LEU ASN GLY VAL ILE PHE GLY GLY GLY SEQRES 9 A 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 A 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 A 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 A 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 A 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 A 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 A 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 A 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 A 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 C 121 GLN VAL GLN LEU VAL GLU SER GLY GLY ALA ALA VAL GLN SEQRES 2 C 121 THR GLY GLY SER LEU ARG LEU SER CYS VAL ALA SER GLY SEQRES 3 C 121 PHE ASP LEU SER ASN HIS ALA MET ALA TRP VAL ARG GLN SEQRES 4 C 121 SER PRO GLY LYS GLY LEU GLU TYR ILE SER GLY ILE ASN SEQRES 5 C 121 ASN GLY GLY THR THR THR THR TYR GLY ASP SER VAL LYS SEQRES 6 C 121 ASP ARG PHE THR ILE SER ARG ASP ASN ALA LYS SER THR SEQRES 7 C 121 VAL TYR LEU GLN MET ASN ARG LEU GLU ALA ASP ASP THR SEQRES 8 C 121 ALA VAL TYR TYR CYS VAL LYS SER SER TYR SER ASP ILE SEQRES 9 C 121 VAL SER ALA ARG PHE ASP SER TRP GLY LYS GLY THR GLN SEQRES 10 C 121 VAL THR VAL SER HET CL C 201 1 HET NA C 202 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 CL CL 1- FORMUL 4 NA NA 1+ FORMUL 5 HOH *218(H2 O) HELIX 1 AA1 GLN A 80 GLU A 84 5 5 HELIX 2 AA2 SER A 125 ALA A 131 1 7 HELIX 3 AA3 THR A 185 HIS A 192 1 8 HELIX 4 AA4 ASP C 28 HIS C 32 5 5 HELIX 5 AA5 GLU C 87 THR C 91 5 5 SHEET 1 AA1 5 SER A 9 GLY A 12 0 SHEET 2 AA1 5 THR A 105 VAL A 109 1 O LYS A 106 N THR A 10 SHEET 3 AA1 5 ASP A 86 ASP A 93 -1 N TYR A 87 O THR A 105 SHEET 4 AA1 5 VAL A 34 GLN A 39 -1 N GLN A 39 O ASP A 86 SHEET 5 AA1 5 LYS A 46 MET A 49 -1 O LYS A 46 N GLN A 38 SHEET 1 AA2 4 SER A 9 GLY A 12 0 SHEET 2 AA2 4 THR A 105 VAL A 109 1 O LYS A 106 N THR A 10 SHEET 3 AA2 4 ASP A 86 ASP A 93 -1 N TYR A 87 O THR A 105 SHEET 4 AA2 4 GLY A 98 PHE A 101 -1 O ILE A 100 N ALA A 91 SHEET 1 AA3 3 VAL A 18 SER A 23 0 SHEET 2 AA3 3 SER A 71 ILE A 76 -1 O ALA A 72 N CYS A 22 SHEET 3 AA3 3 PHE A 63 SER A 68 -1 N SER A 64 O ALA A 75 SHEET 1 AA4 4 SER A 118 PHE A 122 0 SHEET 2 AA4 4 ALA A 134 PHE A 143 -1 O SER A 141 N SER A 118 SHEET 3 AA4 4 TYR A 176 LEU A 184 -1 O LEU A 184 N ALA A 134 SHEET 4 AA4 4 VAL A 163 THR A 165 -1 N GLU A 164 O TYR A 181 SHEET 1 AA5 4 SER A 118 PHE A 122 0 SHEET 2 AA5 4 ALA A 134 PHE A 143 -1 O SER A 141 N SER A 118 SHEET 3 AA5 4 TYR A 176 LEU A 184 -1 O LEU A 184 N ALA A 134 SHEET 4 AA5 4 SER A 169 LYS A 170 -1 N SER A 169 O ALA A 177 SHEET 1 AA6 4 SER A 157 VAL A 159 0 SHEET 2 AA6 4 THR A 149 ALA A 154 -1 N ALA A 154 O SER A 157 SHEET 3 AA6 4 TYR A 195 HIS A 201 -1 O THR A 200 N THR A 149 SHEET 4 AA6 4 SER A 204 VAL A 210 -1 O VAL A 206 N VAL A 199 SHEET 1 AA7 4 GLN C 3 SER C 7 0 SHEET 2 AA7 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AA7 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA7 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA8 6 ALA C 11 GLN C 13 0 SHEET 2 AA8 6 THR C 116 SER C 121 1 O THR C 119 N VAL C 12 SHEET 3 AA8 6 ALA C 92 LYS C 98 -1 N TYR C 94 O THR C 116 SHEET 4 AA8 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AA8 6 LEU C 45 ILE C 51 -1 O ILE C 51 N MET C 34 SHEET 6 AA8 6 THR C 58 TYR C 60 -1 O THR C 59 N GLY C 50 SHEET 1 AA9 4 ALA C 11 GLN C 13 0 SHEET 2 AA9 4 THR C 116 SER C 121 1 O THR C 119 N VAL C 12 SHEET 3 AA9 4 ALA C 92 LYS C 98 -1 N TYR C 94 O THR C 116 SHEET 4 AA9 4 SER C 111 TRP C 112 -1 O SER C 111 N LYS C 98 SSBOND 1 CYS A 22 CYS A 89 1555 1555 2.04 SSBOND 2 CYS A 138 CYS A 197 1555 1555 2.04 SSBOND 3 CYS C 22 CYS C 96 1555 1555 2.04 LINK NA NA C 202 O HOH C 368 1555 4565 3.02 CISPEP 1 TYR A 144 PRO A 145 0 0.29 CRYST1 73.593 121.953 88.675 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013588 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011277 0.00000