HEADER UNKNOWN FUNCTION 08-JUN-23 8PAJ TITLE CRYSTAL STRUCTURE OF A SQUALENE-HOPENE CYCLASE FROM ARCHANGIUM GEPHYRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SQUALENE-HOPENE/TETRAPRENYL-BETA-CURCUMENE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHANGIUM GEPHYRA; SOURCE 3 ORGANISM_TAXID: 48; SOURCE 4 GENE: ATI61_11568; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SQUALENE, HOPENE, CYCLASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.L.WORTHY,M.N.ISUPOV,J.A.LITTLECHILD,D.E.MITCHELL REVDAT 1 26-JUN-24 8PAJ 0 JRNL AUTH H.L.WORTHY,D.E.MITCHELL,M.N.ISUPOV,J.A.LITTLECHILD JRNL TITL STRUCTURE OF A MESOPHILIC SQUALENE-HOPENE CYCLASES FROM JRNL TITL 2 CYSTOBACTER FUSCUS AND ARCHANGIUM GEPHYRA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 117014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.063 REMARK 3 FREE R VALUE TEST SET COUNT : 5924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8176 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 435 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.32100 REMARK 3 B33 (A**2) : 0.23900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5992 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5543 ; 0.006 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8241 ; 1.539 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12721 ; 0.835 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 798 ; 5.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ; 4.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 879 ;14.983 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7504 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1636 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1246 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 159 ; 0.125 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2812 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 553 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2878 ; 1.138 ; 1.394 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2878 ; 1.138 ; 1.394 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3628 ; 1.620 ; 2.512 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3629 ; 1.620 ; 2.513 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3114 ; 1.190 ; 1.632 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3115 ; 1.190 ; 1.633 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4557 ; 1.626 ; 2.888 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4558 ; 1.626 ; 2.889 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11535 ; 3.629 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 30 A 374 1 REMARK 3 1 A 30 A 374 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 417 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0457 -21.1193 39.8917 REMARK 3 T TENSOR REMARK 3 T11: 0.0153 T22: 0.0085 REMARK 3 T33: 0.0215 T12: -0.0025 REMARK 3 T13: 0.0093 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4654 L22: 1.5736 REMARK 3 L33: 1.2246 L12: -0.1470 REMARK 3 L13: -0.1623 L23: 0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0234 S13: -0.0357 REMARK 3 S21: 0.0303 S22: 0.0286 S23: -0.0172 REMARK 3 S31: 0.0272 S32: 0.0632 S33: -0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 21.9346 -11.4421 83.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0014 REMARK 3 T33: 0.0214 T12: -0.0017 REMARK 3 T13: 0.0177 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5575 L22: 1.6451 REMARK 3 L33: 1.1515 L12: -0.0783 REMARK 3 L13: 0.0346 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0195 S13: -0.0026 REMARK 3 S21: -0.0320 S22: 0.0030 S23: -0.0173 REMARK 3 S31: 0.0063 S32: -0.0247 S33: -0.0078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8PAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976284 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 43.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/MOPS [PH 7.5], 90 MM REMARK 280 NANO3, 90 MM NA2PO4, 90 MM (NH4)2SO4, 12.5% PEG 1000, 12.5% PEG REMARK 280 3350, 12.5% MPD, MICROBATCH, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.47900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.08250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.47900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.08250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 809 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 766 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 826 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 GLN A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 GLU A 25 REMARK 465 HIS A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 ALA A 29 REMARK 465 SER A 171 REMARK 465 LEU A 172 REMARK 465 ASN A 173 REMARK 465 ARG A 375 REMARK 465 SER A 376 REMARK 465 GLY A 377 REMARK 465 SER A 378 REMARK 465 ARG A 379 REMARK 465 GLY A 380 REMARK 465 ASN A 381 REMARK 465 PRO A 382 REMARK 465 ALA A 383 REMARK 465 SER A 384 REMARK 465 MET B 20 REMARK 465 GLN B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 LEU B 24 REMARK 465 GLU B 25 REMARK 465 HIS B 26 REMARK 465 GLU B 27 REMARK 465 ASP B 28 REMARK 465 ALA B 29 REMARK 465 PRO B 170 REMARK 465 SER B 171 REMARK 465 LEU B 172 REMARK 465 ASN B 173 REMARK 465 SER B 376 REMARK 465 GLY B 377 REMARK 465 SER B 378 REMARK 465 ARG B 379 REMARK 465 GLY B 380 REMARK 465 ASN B 381 REMARK 465 PRO B 382 REMARK 465 ALA B 383 REMARK 465 SER B 384 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TRP B 55 HG1 THR B 76 1.21 REMARK 500 H TRP A 55 HG1 THR A 76 1.25 REMARK 500 H PHE B 161 HG1 THR B 191 1.25 REMARK 500 H PHE A 161 HG1 THR A 191 1.27 REMARK 500 H TRP B 272 HG1 THR B 285 1.31 REMARK 500 H TRP A 272 HG1 THR A 285 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 598 O HOH A 598 2556 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 43 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 -71.16 -107.80 REMARK 500 ALA A 176 38.36 -94.05 REMARK 500 SER A 177 51.05 -106.11 REMARK 500 SER B 72 -70.05 -109.01 REMARK 500 ALA B 176 37.66 -91.56 REMARK 500 SER B 177 50.58 -102.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 892 DISTANCE = 6.00 ANGSTROMS DBREF1 8PAJ A 20 382 UNP A0A0G2ZXK3_9DELT DBREF2 8PAJ A A0A0G2ZXK3 1 363 DBREF1 8PAJ B 20 382 UNP A0A0G2ZXK3_9DELT DBREF2 8PAJ B A0A0G2ZXK3 1 363 SEQADV 8PAJ ALA A 383 UNP A0A0G2ZXK EXPRESSION TAG SEQADV 8PAJ SER A 384 UNP A0A0G2ZXK EXPRESSION TAG SEQADV 8PAJ ALA B 383 UNP A0A0G2ZXK EXPRESSION TAG SEQADV 8PAJ SER B 384 UNP A0A0G2ZXK EXPRESSION TAG SEQRES 1 A 365 MET GLN ALA SER LEU GLU HIS GLU ASP ALA ARG GLU SER SEQRES 2 A 365 ALA VAL THR GLU ALA LEU ALA ARG ALA VAL ARG PHE LEU SEQRES 3 A 365 GLU LYS ALA ARG THR ALA ASP GLY ARG TRP LEU ASP PHE SEQRES 4 A 365 ARG PHE ARG PHE VAL VAL GLY ASP ARG ASP VAL ILE SER SEQRES 5 A 365 SER GLN TRP VAL THR ALA TYR ALA GLY GLU ALA LEU ALA SEQRES 6 A 365 ARG ALA GLY ALA GLY PRO ALA THR LEU GLU PRO ALA ARG SEQRES 7 A 365 ASP TRP LEU MET SER HIS SER HIS PRO GLY GLY GLY TRP SEQRES 8 A 365 GLY PHE SER LEU ALA THR PRO ALA ASP ALA ASP SER THR SEQRES 9 A 365 ALA ASN VAL VAL ARG PHE LEU SER HIS TRP ARG GLY ALA SEQRES 10 A 365 PRO GLU TRP ASP ALA ALA LEU GLY GLU ALA CYS ALA GLN SEQRES 11 A 365 LEU LEU ARG TYR TRP ASP GLU PRO GLY ARG GLY PHE ARG SEQRES 12 A 365 THR TYR ARG PRO ALA GLU ARG PRO SER LEU ASN GLY TRP SEQRES 13 A 365 ALA SER TYR PRO GLY SER SER TRP CYS ASP ILE HIS LEU SEQRES 14 A 365 CYS VAL THR ALA LEU ALA ALA GLU ALA LEU HIS ALA ALA SEQRES 15 A 365 GLY ASP PRO ARG HIS ARG PRO VAL LEU GLU ALA CYS ALA SEQRES 16 A 365 ARG LEU LEU ARG ASP SER GLN SER PRO GLU GLY PHE TRP SEQRES 17 A 365 GLU ALA TYR TRP TRP HIS GLY ARG THR TYR THR THR THR SEQRES 18 A 365 HIS ALA ALA ARG LEU LEU PHE LEU LEU GLY ASP THR GLY SEQRES 19 A 365 PRO VAL THR ARG ALA ALA HIS TRP LEU ARG GLY ALA GLN SEQRES 20 A 365 GLN PRO GLY GLY GLY TRP GLY ASN GLY THR GLY SER GLU SEQRES 21 A 365 ALA ALA ALA PHE HIS THR ALA LEU ALA LEU PRO VAL LEU SEQRES 22 A 365 LEU LEU ASP GLY GLY ARG ALA ARG HIS GLY ALA ALA LEU SEQRES 23 A 365 ASP ALA GLY LEU ARG TRP LEU LEU ARG ALA GLN GLN PRO SEQRES 24 A 365 ASP GLY SER TRP ALA HIS VAL PRO ILE MET ARG MET PRO SEQRES 25 A 365 ARG PRO GLU VAL HIS ALA PRO TRP GLU ASP PRO GLU GLY SEQRES 26 A 365 CYS LEU LEU LEU PRO VAL LEU THR ASP ARG ASN ARG LEU SEQRES 27 A 365 PHE THR THR ALA THR VAL VAL SER ALA LEU VAL ASP PHE SEQRES 28 A 365 LEU ALA ALA SER ARG SER GLY SER ARG GLY ASN PRO ALA SEQRES 29 A 365 SER SEQRES 1 B 365 MET GLN ALA SER LEU GLU HIS GLU ASP ALA ARG GLU SER SEQRES 2 B 365 ALA VAL THR GLU ALA LEU ALA ARG ALA VAL ARG PHE LEU SEQRES 3 B 365 GLU LYS ALA ARG THR ALA ASP GLY ARG TRP LEU ASP PHE SEQRES 4 B 365 ARG PHE ARG PHE VAL VAL GLY ASP ARG ASP VAL ILE SER SEQRES 5 B 365 SER GLN TRP VAL THR ALA TYR ALA GLY GLU ALA LEU ALA SEQRES 6 B 365 ARG ALA GLY ALA GLY PRO ALA THR LEU GLU PRO ALA ARG SEQRES 7 B 365 ASP TRP LEU MET SER HIS SER HIS PRO GLY GLY GLY TRP SEQRES 8 B 365 GLY PHE SER LEU ALA THR PRO ALA ASP ALA ASP SER THR SEQRES 9 B 365 ALA ASN VAL VAL ARG PHE LEU SER HIS TRP ARG GLY ALA SEQRES 10 B 365 PRO GLU TRP ASP ALA ALA LEU GLY GLU ALA CYS ALA GLN SEQRES 11 B 365 LEU LEU ARG TYR TRP ASP GLU PRO GLY ARG GLY PHE ARG SEQRES 12 B 365 THR TYR ARG PRO ALA GLU ARG PRO SER LEU ASN GLY TRP SEQRES 13 B 365 ALA SER TYR PRO GLY SER SER TRP CYS ASP ILE HIS LEU SEQRES 14 B 365 CYS VAL THR ALA LEU ALA ALA GLU ALA LEU HIS ALA ALA SEQRES 15 B 365 GLY ASP PRO ARG HIS ARG PRO VAL LEU GLU ALA CYS ALA SEQRES 16 B 365 ARG LEU LEU ARG ASP SER GLN SER PRO GLU GLY PHE TRP SEQRES 17 B 365 GLU ALA TYR TRP TRP HIS GLY ARG THR TYR THR THR THR SEQRES 18 B 365 HIS ALA ALA ARG LEU LEU PHE LEU LEU GLY ASP THR GLY SEQRES 19 B 365 PRO VAL THR ARG ALA ALA HIS TRP LEU ARG GLY ALA GLN SEQRES 20 B 365 GLN PRO GLY GLY GLY TRP GLY ASN GLY THR GLY SER GLU SEQRES 21 B 365 ALA ALA ALA PHE HIS THR ALA LEU ALA LEU PRO VAL LEU SEQRES 22 B 365 LEU LEU ASP GLY GLY ARG ALA ARG HIS GLY ALA ALA LEU SEQRES 23 B 365 ASP ALA GLY LEU ARG TRP LEU LEU ARG ALA GLN GLN PRO SEQRES 24 B 365 ASP GLY SER TRP ALA HIS VAL PRO ILE MET ARG MET PRO SEQRES 25 B 365 ARG PRO GLU VAL HIS ALA PRO TRP GLU ASP PRO GLU GLY SEQRES 26 B 365 CYS LEU LEU LEU PRO VAL LEU THR ASP ARG ASN ARG LEU SEQRES 27 B 365 PHE THR THR ALA THR VAL VAL SER ALA LEU VAL ASP PHE SEQRES 28 B 365 LEU ALA ALA SER ARG SER GLY SER ARG GLY ASN PRO ALA SEQRES 29 B 365 SER HET IMD A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET IMD A 404 10 HET MPO A 405 28 HET EDO A 406 10 HET EDO A 407 10 HET CL A 408 1 HET IMD B 401 10 HET IMD B 402 10 HET EDO B 403 10 HET MPO B 404 28 HET EDO B 405 10 HET EDO B 406 10 HET CL B 407 1 HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 IMD 4(C3 H5 N2 1+) FORMUL 4 EDO 7(C2 H6 O2) FORMUL 7 MPO 2(C7 H15 N O4 S) FORMUL 10 CL 2(CL 1-) FORMUL 18 HOH *772(H2 O) HELIX 1 AA1 ARG A 30 ARG A 49 1 20 HELIX 2 AA2 SER A 72 ALA A 86 1 15 HELIX 3 AA3 GLY A 89 HIS A 103 1 15 HELIX 4 AA4 ASP A 119 SER A 131 1 13 HELIX 5 AA5 HIS A 132 ARG A 134 5 3 HELIX 6 AA6 ALA A 136 ARG A 152 1 17 HELIX 7 AA7 SER A 181 ASP A 185 5 5 HELIX 8 AA8 HIS A 187 GLY A 202 1 16 HELIX 9 AA9 ASP A 203 ARG A 205 5 3 HELIX 10 AB1 HIS A 206 GLN A 221 1 16 HELIX 11 AB2 THR A 236 LEU A 249 1 14 HELIX 12 AB3 THR A 252 GLN A 266 1 15 HELIX 13 AB4 ALA A 281 ASP A 295 1 15 HELIX 14 AB5 GLY A 296 GLN A 316 1 21 HELIX 15 AB6 ALA A 337 ASP A 341 5 5 HELIX 16 AB7 ARG A 356 ALA A 373 1 18 HELIX 17 AB8 GLU B 31 ARG B 49 1 19 HELIX 18 AB9 SER B 72 ALA B 86 1 15 HELIX 19 AC1 GLY B 89 HIS B 103 1 15 HELIX 20 AC2 ASP B 119 SER B 131 1 13 HELIX 21 AC3 HIS B 132 ARG B 134 5 3 HELIX 22 AC4 ALA B 136 ARG B 152 1 17 HELIX 23 AC5 SER B 181 ASP B 185 5 5 HELIX 24 AC6 HIS B 187 GLY B 202 1 16 HELIX 25 AC7 ASP B 203 ARG B 205 5 3 HELIX 26 AC8 HIS B 206 GLN B 221 1 16 HELIX 27 AC9 THR B 236 LEU B 249 1 14 HELIX 28 AD1 THR B 252 GLN B 266 1 15 HELIX 29 AD2 ALA B 281 ASP B 295 1 15 HELIX 30 AD3 GLY B 296 GLN B 316 1 21 HELIX 31 AD4 ALA B 337 ASP B 341 5 5 HELIX 32 AD5 ARG B 356 ALA B 373 1 18 SHEET 1 AA1 2 ASP A 57 PHE A 60 0 SHEET 2 AA1 2 VAL A 69 SER A 71 -1 O SER A 71 N ASP A 57 SHEET 1 AA2 2 TRP A 154 ASP A 155 0 SHEET 2 AA2 2 GLY A 160 PHE A 161 -1 O GLY A 160 N ASP A 155 SHEET 1 AA3 2 ASP B 57 PHE B 60 0 SHEET 2 AA3 2 VAL B 69 SER B 71 -1 O SER B 71 N ASP B 57 SHEET 1 AA4 2 TRP B 154 ASP B 155 0 SHEET 2 AA4 2 GLY B 160 PHE B 161 -1 O GLY B 160 N ASP B 155 CRYST1 92.958 84.165 87.968 90.00 94.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010758 0.000000 0.000791 0.00000 SCALE2 0.000000 0.011881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011398 0.00000