HEADER DNA BINDING PROTEIN 12-JUN-23 8PDE TITLE CRYSTAL STRUCTURE OF THE MADS-BOX/MEF2 DOMAIN OF MEF2D BOUND TO DSDNA TITLE 2 AND HDAC4 DEACETYLASE BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEF2D PROTEIN; COMPND 3 CHAIN: A, B, D, E; COMPND 4 SYNONYM: MYOCYTE ENHANCER FACTOR 2D; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: MISSING RESIDUES ARE NOT TRACEABLE IN THE ELECTRON COMPND 7 DENSITY MAPS; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HDAC4 (HISTONE DEACETYLASE 4) BINDING MOTIF COMPND 10 PEPTIDE:GSGEVKMKLQEFVLNKK; COMPND 11 CHAIN: C, X; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: SYNTHETIC PEPTIDE: MISSING RESIDUES ARE NOT TRACEABLE COMPND 14 IN THE ELECTRON DENSITY MAPS; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'); COMPND 17 CHAIN: F, K; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(P*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3'); COMPND 21 CHAIN: G, L; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEF2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS MYOCYTE ENHANCER FACTOR 2, CLASS II HISTONE DEACETYLASE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHINELLATO,A.CARLI,S.PERIN,Y.MAZZOCATO,B.BIONDI,E.DI GIORGIO, AUTHOR 2 C.BRANCOLINI,A.ANGELINI,L.CENDRON REVDAT 1 17-APR-24 8PDE 0 JRNL AUTH M.CHINELLATO,S.PERIN,A.CARLI,L.LASTELLA,B.BIONDI,G.BORSATO, JRNL AUTH 2 E.DI GIORGIO,C.BRANCOLINI,L.CENDRON,A.ANGELINI JRNL TITL FOLDING OF CLASS IIA HDAC DERIVED PEPTIDES INTO JRNL TITL 2 ALPHA-HELICES UPON BINDING TO MYOCYTE ENHANCER FACTOR-2 IN JRNL TITL 3 COMPLEX WITH DNA. JRNL REF J.MOL.BIOL. V. 436 68541 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38492719 JRNL DOI 10.1016/J.JMB.2024.168541 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 17911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3268 REMARK 3 NUCLEIC ACID ATOMS : 1148 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292128019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM FORMATE, 100 MM BIS-TRIS REMARK 280 PROPANE PH 6.5 AND 20% W/V POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.16500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 93 REMARK 465 ASN A 94 REMARK 465 GLY A 95 REMARK 465 MET B 1 REMARK 465 ASN B 94 REMARK 465 GLY B 95 REMARK 465 GLY C 167 REMARK 465 SER C 168 REMARK 465 LYS C 182 REMARK 465 LYS C 183 REMARK 465 MET D 1 REMARK 465 ASN D 94 REMARK 465 GLY D 95 REMARK 465 MET E 1 REMARK 465 PHE E 93 REMARK 465 ASN E 94 REMARK 465 GLY E 95 REMARK 465 LYS X 182 REMARK 465 LYS X 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA F 3 C3' - O3' - P ANGL. DEV. = -8.0 DEGREES REMARK 500 DC F 4 C3' - O3' - P ANGL. DEV. = -7.3 DEGREES REMARK 500 DT F 5 C3' - O3' - P ANGL. DEV. = -8.1 DEGREES REMARK 500 DA F 6 C3' - O3' - P ANGL. DEV. = -7.9 DEGREES REMARK 500 DT G 5 C3' - O3' - P ANGL. DEV. = -8.2 DEGREES REMARK 500 DA K 2 C3' - O3' - P ANGL. DEV. = -8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 60 -59.75 -130.95 REMARK 500 SER D 78 76.81 -150.53 REMARK 500 ASP E 61 108.39 -162.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PDE A 1 95 UNP Q05BX2 Q05BX2_HUMAN 1 95 DBREF 8PDE B 1 95 UNP Q05BX2 Q05BX2_HUMAN 1 95 DBREF 8PDE C 167 183 PDB 8PDE 8PDE 167 183 DBREF 8PDE D 1 95 UNP Q05BX2 Q05BX2_HUMAN 1 95 DBREF 8PDE E 1 95 UNP Q05BX2 Q05BX2_HUMAN 1 95 DBREF 8PDE F 2 15 PDB 8PDE 8PDE 2 15 DBREF 8PDE G 2 15 PDB 8PDE 8PDE 2 15 DBREF 8PDE X 167 183 PDB 8PDE 8PDE 167 183 DBREF 8PDE K 2 15 PDB 8PDE 8PDE 2 15 DBREF 8PDE L 2 15 PDB 8PDE 8PDE 2 15 SEQRES 1 A 95 MET GLY ARG LYS LYS ILE GLN ILE GLN ARG ILE THR ASP SEQRES 2 A 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 A 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 A 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN HIS SER ASN SEQRES 5 A 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 A 95 LEU LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER SEQRES 7 A 95 ARG THR ASN ALA ASP ILE ILE GLU THR LEU ARG LYS LYS SEQRES 8 A 95 GLY PHE ASN GLY SEQRES 1 B 95 MET GLY ARG LYS LYS ILE GLN ILE GLN ARG ILE THR ASP SEQRES 2 B 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 B 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 B 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN HIS SER ASN SEQRES 5 B 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 B 95 LEU LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER SEQRES 7 B 95 ARG THR ASN ALA ASP ILE ILE GLU THR LEU ARG LYS LYS SEQRES 8 B 95 GLY PHE ASN GLY SEQRES 1 C 17 GLY SER GLY GLU VAL LYS MET LYS LEU GLN GLU PHE VAL SEQRES 2 C 17 LEU ASN LYS LYS SEQRES 1 D 95 MET GLY ARG LYS LYS ILE GLN ILE GLN ARG ILE THR ASP SEQRES 2 D 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 D 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 D 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN HIS SER ASN SEQRES 5 D 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 D 95 LEU LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER SEQRES 7 D 95 ARG THR ASN ALA ASP ILE ILE GLU THR LEU ARG LYS LYS SEQRES 8 D 95 GLY PHE ASN GLY SEQRES 1 E 95 MET GLY ARG LYS LYS ILE GLN ILE GLN ARG ILE THR ASP SEQRES 2 E 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 E 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 E 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN HIS SER ASN SEQRES 5 E 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 E 95 LEU LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER SEQRES 7 E 95 ARG THR ASN ALA ASP ILE ILE GLU THR LEU ARG LYS LYS SEQRES 8 E 95 GLY PHE ASN GLY SEQRES 1 F 14 DA DA DC DT DA DT DT DT DA DT DA DA DG SEQRES 2 F 14 DA SEQRES 1 G 14 DT DC DT DT DA DT DA DA DA DT DA DG DT SEQRES 2 G 14 DT SEQRES 1 X 17 GLY SER GLY GLU VAL LYS MET LYS LEU GLN GLU PHE VAL SEQRES 2 X 17 LEU ASN LYS LYS SEQRES 1 K 14 DA DA DC DT DA DT DT DT DA DT DA DA DG SEQRES 2 K 14 DA SEQRES 1 L 14 DT DC DT DT DA DT DA DA DA DT DA DG DT SEQRES 2 L 14 DT FORMUL 11 HOH *60(H2 O) HELIX 1 AA1 ASP A 13 CYS A 39 1 27 HELIX 2 AA2 ASP A 61 THR A 70 1 10 HELIX 3 AA3 ASN A 81 LYS A 90 1 10 HELIX 4 AA4 ASP B 13 CYS B 39 1 27 HELIX 5 AA5 ASP B 61 TYR B 72 1 12 HELIX 6 AA6 ASN B 81 GLY B 92 1 12 HELIX 7 AA7 GLU C 170 LEU C 180 1 11 HELIX 8 AA8 ASP D 13 CYS D 39 1 27 HELIX 9 AA9 ASP D 61 TYR D 72 1 12 HELIX 10 AB1 ASN D 81 GLY D 92 1 12 HELIX 11 AB2 ASP E 13 CYS E 39 1 27 HELIX 12 AB3 ASP E 61 TYR E 72 1 12 HELIX 13 AB4 ASN E 81 GLY E 92 1 12 HELIX 14 AB5 SER X 168 ASN X 181 1 14 SHEET 1 AA1 6 GLU A 77 THR A 80 0 SHEET 2 AA1 6 LEU B 54 ALA B 58 1 O GLN B 56 N ARG A 79 SHEET 3 AA1 6 GLU B 42 PHE B 48 -1 N ILE B 47 O PHE B 55 SHEET 4 AA1 6 GLU A 42 PHE A 48 -1 N ILE A 46 O ALA B 44 SHEET 5 AA1 6 LEU A 54 ALA A 58 -1 O TYR A 57 N LEU A 45 SHEET 6 AA1 6 GLU B 77 THR B 80 1 O ARG B 79 N GLN A 56 SHEET 1 AA2 6 GLU D 77 THR D 80 0 SHEET 2 AA2 6 LEU E 54 ALA E 58 1 O GLN E 56 N ARG D 79 SHEET 3 AA2 6 GLU E 42 PHE E 48 -1 N LEU E 45 O TYR E 57 SHEET 4 AA2 6 GLU D 42 PHE D 48 -1 N PHE D 48 O GLU E 42 SHEET 5 AA2 6 LEU D 54 ALA D 58 -1 O TYR D 57 N LEU D 45 SHEET 6 AA2 6 GLU E 77 THR E 80 1 O ARG E 79 N GLN D 56 CRYST1 57.024 76.330 56.240 90.00 92.57 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017536 0.000000 0.000786 0.00000 SCALE2 0.000000 0.013101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017799 0.00000