HEADER IMMUNE SYSTEM 13-JUN-23 8PE9 TITLE COMPLEX BETWEEN DDR1 DS-LIKE DOMAIN AND PRTH-101 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 5 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 6 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 7 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 8 TYROSINE-PROTEIN KINASE CAK; COMPND 9 EC: 2.7.10.1; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DDR1 DS-LIKE DOMAIN, PRODUCED VIA TRYPSIN DIGESTION OF COMPND 12 DDR1 EXTRACELLULAR DOMAIN (RECOMBINANTLY OVEREXPRESSED AND PURIFIED COMPND 13 FROM EXPI293F CELLS USING A PCDNA3.4 VECTOR).; COMPND 14 MOL_ID: 2; COMPND 15 MOLECULE: PRTH-101 FAB, HEAVY CHAIN; COMPND 16 CHAIN: H; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: FAB FROM PRTH-101 HEAVY CHAIN, GENERATED VIA PAPAIN COMPND 19 DIGEST OF FULL MONOCLONAL ANTIBODY (RECOMBINANTLY OVEREXPRESSED AND COMPND 20 PURIFIED FROM EXPICHO-S CELLS USING PCDNA3.4 VECTOR).; COMPND 21 MOL_ID: 3; COMPND 22 MOLECULE: PRTH-101 FAB, LIGHT CHAIN; COMPND 23 CHAIN: L; COMPND 24 ENGINEERED: YES; COMPND 25 OTHER_DETAILS: FAB FROM PRTH-101 LIGHT CHAIN, GENERATED VIA PAPAIN COMPND 26 DIGEST OF FULL MONOCLONAL ANTIBODY (RECOMBINANTLY OVEREXPRESSED AND COMPND 27 PURIFIED FROM EXPICHO-S CELLS USING PCDNA3.4 VECTOR). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL: EXPICHO-S; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: EXPICHO-S; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4 KEYWDS HUMANIZED ANTIBODY, DDR1, COLLAGEN, IMMUNE EXCLUSION, BREAST CANCER, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,H.CHIANG,W.XIONG,V.LAURENT,S.C.GRIFFITHS,J.DUELFER,H.DENG, AUTHOR 2 X.SUN,Y.W.YIN,W.LI,L.P.AUDOLY,Z.AN,T.SCHUERPF,R.LI,N.ZHANG REVDAT 2 07-FEB-24 8PE9 1 REMARK REVDAT 1 28-JUN-23 8PE9 0 JRNL AUTH J.LIU,H.C.CHIANG,W.XIONG,V.LAURENT,S.C.GRIFFITHS,J.DULFER, JRNL AUTH 2 H.DENG,X.SUN,Y.W.YIN,W.LI,L.P.AUDOLY,Z.AN,T.SCHURPF,R.LI, JRNL AUTH 3 N.ZHANG JRNL TITL A HIGHLY SELECTIVE HUMANIZED DDR1 MAB REVERSES IMMUNE JRNL TITL 2 EXCLUSION BY DISRUPTING COLLAGEN FIBER ALIGNMENT IN BREAST JRNL TITL 3 CANCER. JRNL REF J IMMUNOTHER CANCER V. 11 2023 JRNL REFN ESSN 2051-1426 JRNL PMID 37328286 JRNL DOI 10.1136/JITC-2023-006720 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 61.0 REMARK 3 NUMBER OF REFLECTIONS : 9760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 496 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3315 REMARK 3 BIN FREE R VALUE : 0.5760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 13 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.53090 REMARK 3 B22 (A**2) : 5.20890 REMARK 3 B33 (A**2) : -7.73970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.600 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.779 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.828 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.796 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4757 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6467 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1586 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 798 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4757 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 614 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3201 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 0.69 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.83 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.80 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292124306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7, STARANISO 2.3.79 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9760 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.152 REMARK 200 RESOLUTION RANGE LOW (A) : 72.225 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 200 DATA REDUNDANCY : 5.970 REMARK 200 R MERGE (I) : 0.27700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 10.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 72.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.55 REMARK 200 R MERGE FOR SHELL (I) : 0.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 26.05 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AG4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.0, 20% (W/V) PEG 6000, REMARK 280 10 MM ZNCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.54800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.54800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 244 REMARK 465 GLN A 245 REMARK 465 GLU A 246 REMARK 465 LEU A 247 REMARK 465 LEU A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 ASN A 325 REMARK 465 PHE H 49 REMARK 465 SER H 50 REMARK 465 LEU H 51 REMARK 465 SER H 157 REMARK 465 SER H 158 REMARK 465 LYS H 159 REMARK 465 SER H 160 REMARK 465 THR H 161 REMARK 465 SER H 162 REMARK 465 GLY H 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 40 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 205 -65.58 65.75 REMARK 500 ALA A 207 83.64 67.69 REMARK 500 LEU A 210 54.25 -108.69 REMARK 500 ALA A 232 33.86 -149.24 REMARK 500 GLU A 316 71.07 52.98 REMARK 500 TYR H 75 75.01 50.45 REMARK 500 TYR H 80 120.51 -15.50 REMARK 500 TYR H 81 -73.86 -69.68 REMARK 500 ARG H 88 -167.39 59.18 REMARK 500 PHE H 89 86.95 61.75 REMARK 500 ASN H 105 -127.53 50.05 REMARK 500 THR H 146 107.81 -52.89 REMARK 500 GLU H 242 86.97 54.54 REMARK 500 SER L 117 100.87 -57.31 REMARK 500 ASN L 174 -1.40 70.51 REMARK 500 GLN L 188 121.94 -38.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 230 O REMARK 620 2 ASP A 233 OD1 81.3 REMARK 620 3 VAL A 235 O 171.8 99.8 REMARK 620 4 SER A 360 O 74.8 156.0 103.4 REMARK 620 5 GLU A 361 OE1 101.6 84.1 86.6 103.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 320 NE2 REMARK 620 2 ASP A 367 OD1 101.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 194 NE2 REMARK 620 2 ASN L 160 ND2 128.1 REMARK 620 N 1 DBREF 8PE9 A 188 370 UNP Q08345 DDR1_HUMAN 188 370 DBREF 8PE9 H 23 244 PDB 8PE9 8PE9 23 244 DBREF 8PE9 L 24 235 PDB 8PE9 8PE9 24 235 SEQRES 1 A 183 ARG ASP GLY LEU LEU SER TYR THR ALA PRO VAL GLY GLN SEQRES 2 A 183 THR MET TYR LEU SER GLU ALA VAL TYR LEU ASN ASP SER SEQRES 3 A 183 THR TYR ASP GLY HIS THR VAL GLY GLY LEU GLN TYR GLY SEQRES 4 A 183 GLY LEU GLY GLN LEU ALA ASP GLY VAL VAL GLY LEU ASP SEQRES 5 A 183 ASP PHE ARG LYS SER GLN GLU LEU ARG VAL TRP PRO GLY SEQRES 6 A 183 TYR ASP TYR VAL GLY TRP SER ASN HIS SER PHE SER SER SEQRES 7 A 183 GLY TYR VAL GLU MET GLU PHE GLU PHE ASP ARG LEU ARG SEQRES 8 A 183 ALA PHE GLN ALA MET GLN VAL HIS CYS ASN ASN MET HIS SEQRES 9 A 183 THR LEU GLY ALA ARG LEU PRO GLY GLY VAL GLU CYS ARG SEQRES 10 A 183 PHE ARG ARG GLY PRO ALA MET ALA TRP GLU GLY GLU PRO SEQRES 11 A 183 MET ARG HIS ASN LEU GLY GLY ASN LEU GLY ASP PRO ARG SEQRES 12 A 183 ALA ARG ALA VAL SER VAL PRO LEU GLY GLY ARG VAL ALA SEQRES 13 A 183 ARG PHE LEU GLN CYS ARG PHE LEU PHE ALA GLY PRO TRP SEQRES 14 A 183 LEU LEU PHE SER GLU ILE SER PHE ILE SER ASP VAL VAL SEQRES 15 A 183 ASN SEQRES 1 H 222 GLN VAL GLN LEU VAL GLU SER GLY GLY ARG VAL VAL GLN SEQRES 2 H 222 PRO GLY ARG SER LEU ARG LEU SER CYS THR ALA SER GLY SEQRES 3 H 222 PHE SER LEU ASN ARG TYR TYR MET LEU TRP VAL ARG GLN SEQRES 4 H 222 ALA PRO GLY LYS GLY LEU GLU TRP ILE GLY THR ILE SER SEQRES 5 H 222 TYR GLY ASP THR THR TYR TYR ALA SER TRP ALA LYS GLY SEQRES 6 H 222 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 222 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 222 VAL TYR TYR CYS ALA ARG ALA ASP THR GLY ASP ASN GLY SEQRES 9 H 222 TYR LEU GLY LEU GLN LEU TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 222 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 222 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 222 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 222 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 222 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 222 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 222 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 222 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 222 LYS SEQRES 1 L 212 ILE GLN MET THR GLN SER PRO SER SER VAL SER ALA SER SEQRES 2 L 212 VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER GLN SEQRES 3 L 212 SER ILE GLY SER VAL LEU ALA TRP TYR GLN GLN LYS PRO SEQRES 4 L 212 GLY LYS ALA PRO LYS LEU LEU ILE SER GLY VAL PHE ASP SEQRES 5 L 212 LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 212 SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU GLN SEQRES 7 L 212 PRO GLU ASP PHE ALA THR TYR TYR CYS GLN TYR ILE PRO SEQRES 8 L 212 TYR GLY SER SER PRO PHE GLY GLY GLY THR LYS VAL GLU SEQRES 9 L 212 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 212 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 212 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 212 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 212 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 212 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 212 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 212 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 212 ASN ARG GLY GLU HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET CA A5001 1 HET NAG A5002 14 HET ZN A5003 1 HET NA A5004 1 HET ZN H 301 1 HET ZN L 301 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 CA CA 2+ FORMUL 7 ZN 3(ZN 2+) FORMUL 8 NA NA 1+ HELIX 1 AA1 GLY A 229 ASP A 233 5 5 HELIX 2 AA2 HIS A 261 PHE A 263 5 3 HELIX 3 AA3 MET A 290 GLY A 294 5 5 HELIX 4 AA4 SER H 83 GLY H 87 5 5 HELIX 5 AA5 ARG H 108 THR H 112 5 5 HELIX 6 AA6 GLU L 145 GLY L 150 1 6 HELIX 7 AA7 LYS L 205 HIS L 211 1 7 SHEET 1 AA1 4 LEU A 191 THR A 195 0 SHEET 2 AA1 4 TYR A 267 CYS A 287 -1 O GLU A 273 N LEU A 192 SHEET 3 AA1 4 TRP A 356 VAL A 368 -1 O SER A 363 N GLN A 284 SHEET 4 AA1 4 VAL A 256 SER A 259 -1 N VAL A 256 O PHE A 359 SHEET 1 AA2 4 LEU A 191 THR A 195 0 SHEET 2 AA2 4 TYR A 267 CYS A 287 -1 O GLU A 273 N LEU A 192 SHEET 3 AA2 4 ARG A 332 LEU A 351 -1 O CYS A 348 N MET A 270 SHEET 4 AA2 4 VAL A 301 ARG A 306 -1 N GLU A 302 O ARG A 349 SHEET 1 AA3 2 THR A 201 MET A 202 0 SHEET 2 AA3 2 VAL A 208 TYR A 209 -1 O VAL A 208 N MET A 202 SHEET 1 AA4 2 THR A 219 VAL A 220 0 SHEET 2 AA4 2 LEU A 223 GLN A 224 -1 O LEU A 223 N VAL A 220 SHEET 1 AA5 4 GLN H 25 GLU H 28 0 SHEET 2 AA5 4 ARG H 41 SER H 47 -1 O SER H 47 N GLN H 25 SHEET 3 AA5 4 THR H 99 GLN H 103 -1 O LEU H 102 N LEU H 42 SHEET 4 AA5 4 THR H 90 ASP H 94 -1 N SER H 92 O TYR H 101 SHEET 1 AA6 6 VAL H 33 VAL H 34 0 SHEET 2 AA6 6 THR H 137 VAL H 141 1 O THR H 140 N VAL H 34 SHEET 3 AA6 6 ALA H 113 ALA H 120 -1 N TYR H 115 O THR H 137 SHEET 4 AA6 6 TYR H 55 GLN H 61 -1 N VAL H 59 O TYR H 116 SHEET 5 AA6 6 LEU H 67 SER H 74 -1 O ILE H 70 N TRP H 58 SHEET 6 AA6 6 ASP H 77 THR H 79 -1 O ASP H 77 N SER H 74 SHEET 1 AA7 4 VAL H 33 VAL H 34 0 SHEET 2 AA7 4 THR H 137 VAL H 141 1 O THR H 140 N VAL H 34 SHEET 3 AA7 4 ALA H 113 ALA H 120 -1 N TYR H 115 O THR H 137 SHEET 4 AA7 4 LEU H 130 LEU H 132 -1 O LEU H 132 N ARG H 119 SHEET 1 AA8 4 VAL H 151 LEU H 154 0 SHEET 2 AA8 4 ALA H 167 TYR H 175 -1 O GLY H 169 N LEU H 154 SHEET 3 AA8 4 TYR H 206 THR H 213 -1 O VAL H 212 N LEU H 168 SHEET 4 AA8 4 VAL H 193 THR H 195 -1 N HIS H 194 O VAL H 211 SHEET 1 AA9 4 VAL H 151 LEU H 154 0 SHEET 2 AA9 4 ALA H 167 TYR H 175 -1 O GLY H 169 N LEU H 154 SHEET 3 AA9 4 TYR H 206 THR H 213 -1 O VAL H 212 N LEU H 168 SHEET 4 AA9 4 VAL H 199 LEU H 200 -1 N VAL H 199 O SER H 207 SHEET 1 AB1 3 THR H 181 TRP H 184 0 SHEET 2 AB1 3 ILE H 225 HIS H 230 -1 O ASN H 229 N THR H 181 SHEET 3 AB1 3 THR H 235 ARG H 240 -1 O THR H 235 N HIS H 230 SHEET 1 AB2 3 MET L 26 SER L 29 0 SHEET 2 AB2 3 VAL L 41 ILE L 51 -1 O THR L 44 N SER L 29 SHEET 3 AB2 3 PHE L 84 ILE L 97 -1 O PHE L 93 N CYS L 45 SHEET 1 AB3 6 SER L 32 ALA L 35 0 SHEET 2 AB3 6 THR L 124 ILE L 128 1 O GLU L 127 N VAL L 33 SHEET 3 AB3 6 THR L 107 GLN L 111 -1 N TYR L 108 O THR L 124 SHEET 4 AB3 6 LEU L 55 GLN L 60 -1 N ALA L 56 O GLN L 111 SHEET 5 AB3 6 LYS L 67 GLY L 72 -1 O LEU L 69 N TRP L 57 SHEET 6 AB3 6 ASP L 75 LEU L 76 -1 O ASP L 75 N SER L 71 SHEET 1 AB4 4 SER L 136 PHE L 140 0 SHEET 2 AB4 4 THR L 151 PHE L 161 -1 O VAL L 155 N PHE L 140 SHEET 3 AB4 4 TYR L 195 SER L 204 -1 O LEU L 201 N VAL L 154 SHEET 4 AB4 4 SER L 181 GLN L 182 -1 N GLN L 182 O THR L 200 SHEET 1 AB5 4 ALA L 175 GLN L 177 0 SHEET 2 AB5 4 LYS L 167 VAL L 172 -1 N VAL L 172 O ALA L 175 SHEET 3 AB5 4 TYR L 214 THR L 219 -1 O GLU L 217 N GLN L 169 SHEET 4 AB5 4 VAL L 227 PHE L 231 -1 O VAL L 227 N VAL L 218 SSBOND 1 CYS A 303 CYS A 348 1555 1555 2.03 SSBOND 2 CYS H 44 CYS H 117 1555 1555 2.03 SSBOND 3 CYS H 170 CYS H 226 1555 1555 2.03 SSBOND 4 CYS L 45 CYS L 110 1555 1555 2.04 SSBOND 5 CYS L 156 CYS L 216 1555 1555 2.04 LINK ND2 ASN A 211 C1 NAG A5002 1555 1555 1.43 LINK ND2 ASN A 260 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.40 LINK O GLN A 230 CA CA A5001 1555 1555 2.16 LINK OD1 ASP A 233 CA CA A5001 1555 1555 2.15 LINK O VAL A 235 CA CA A5001 1555 1555 2.38 LINK NE2 HIS A 320 ZN ZN A5003 1555 2455 2.02 LINK O SER A 360 CA CA A5001 1555 1555 2.58 LINK OE1 GLU A 361 CA CA A5001 1555 1555 2.27 LINK OD1 ASP A 367 ZN ZN A5003 1555 1555 2.12 LINK NE2 HIS H 194 ZN ZN L 301 1555 1555 2.26 LINK ZN ZN H 301 OD1 ASP L 75 1555 1555 2.23 LINK ND2 ASN L 160 ZN ZN L 301 1555 1555 2.29 CISPEP 1 GLU H 178 PRO H 179 0 5.97 CISPEP 2 SER L 29 PRO L 30 0 -0.57 CISPEP 3 TYR L 162 PRO L 163 0 0.57 CRYST1 117.096 144.450 52.299 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019121 0.00000