HEADER MOTOR PROTEIN 15-JUN-23 8PFA TITLE X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS K167R MUTANT OF THE PILF- TITLE 2 GSPIIB DOMAIN IN THE C-DI-GMP BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-DI-GMP BINDING DOMAIN OF THE ATPASE ENZYME PILF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C-DI-GMP BINDING DOMAIN OF THE ATPASE ENZYME PILF; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: C-DI-GMP BINDING DOMAIN OF THE ATPASE ENZYME PILF SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 GENE: PILF, TT_C1622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PILT CLASS, GSPII, LIGAND BINDING, C-DI-GMP, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.NEISSNER,J.WOEHNERT REVDAT 1 26-JUN-24 8PFA 0 JRNL AUTH K.NEISSNER,J.WOEHNERT JRNL TITL X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS K167R MUTANT OF JRNL TITL 2 THE PILF-GSPIIB DOMAIN IN THE C-DI-GMP BOUND STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6200 - 4.2300 1.00 2580 137 0.1527 0.1765 REMARK 3 2 4.2300 - 3.3600 1.00 2582 135 0.1731 0.1993 REMARK 3 3 3.3600 - 2.9300 1.00 2582 138 0.2109 0.2734 REMARK 3 4 2.9300 - 2.6700 1.00 2572 139 0.2209 0.2540 REMARK 3 5 2.6700 - 2.4800 1.00 2596 133 0.2186 0.2810 REMARK 3 6 2.4700 - 2.3300 1.00 2597 140 0.2098 0.2486 REMARK 3 7 2.3300 - 2.2100 1.00 2569 133 0.2111 0.2430 REMARK 3 8 2.2100 - 2.1200 1.00 2601 138 0.2169 0.2746 REMARK 3 9 2.1200 - 2.0300 1.00 2541 133 0.2262 0.2401 REMARK 3 10 2.0300 - 1.9600 1.00 2602 135 0.2352 0.2582 REMARK 3 11 1.9600 - 1.9000 1.00 2571 137 0.2484 0.3003 REMARK 3 12 1.9000 - 1.8500 1.00 2608 138 0.2745 0.3211 REMARK 3 13 1.8500 - 1.8000 1.00 2574 138 0.3254 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.052 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2313 REMARK 3 ANGLE : 1.252 3161 REMARK 3 CHIRALITY : 0.062 350 REMARK 3 PLANARITY : 0.006 387 REMARK 3 DIHEDRAL : 44.081 311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 9:146 OR RESID 201:201 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.886 -16.533 22.150 REMARK 3 T TENSOR REMARK 3 T11: 0.2520 T22: 0.3535 REMARK 3 T33: 0.2578 T12: -0.0279 REMARK 3 T13: -0.0229 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.6646 L22: 7.0489 REMARK 3 L33: 1.6266 L12: -0.4056 REMARK 3 L13: 0.0561 L23: 0.9902 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.0476 S13: -0.0169 REMARK 3 S21: -0.1586 S22: 0.0480 S23: 0.0186 REMARK 3 S31: 0.0722 S32: 0.1304 S33: -0.0847 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 9:145 OR RESID 201:201 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.681 -29.046 21.318 REMARK 3 T TENSOR REMARK 3 T11: 0.4165 T22: 0.4112 REMARK 3 T33: 0.3290 T12: -0.0937 REMARK 3 T13: -0.0545 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 6.3712 L22: 3.0086 REMARK 3 L33: 1.1294 L12: -1.6744 REMARK 3 L13: 1.1264 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: -0.0414 S13: -0.0789 REMARK 3 S21: 0.1241 S22: 0.0282 S23: 0.0718 REMARK 3 S31: 0.0895 S32: -0.0549 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 202:204 ) OR ( CHAIN B AND RESID REMARK 3 202:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.092 -26.091 26.375 REMARK 3 T TENSOR REMARK 3 T11: 1.0178 T22: 1.2024 REMARK 3 T33: 0.9070 T12: 0.1319 REMARK 3 T13: -0.0479 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 4.7300 L22: 4.0628 REMARK 3 L33: 2.0520 L12: 2.1057 REMARK 3 L13: -0.4519 L23: -0.0375 REMARK 3 S TENSOR REMARK 3 S11: 0.2137 S12: -0.3858 S13: 0.1311 REMARK 3 S21: 0.5002 S22: -0.0640 S23: -0.1144 REMARK 3 S31: -0.0560 S32: -0.2966 S33: 0.1007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 205:207 ) OR ( CHAIN B AND RESID REMARK 3 209:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.558 -17.435 22.993 REMARK 3 T TENSOR REMARK 3 T11: 0.9351 T22: 0.7531 REMARK 3 T33: 0.8300 T12: 0.0333 REMARK 3 T13: 0.0699 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 0.0827 L22: 0.6409 REMARK 3 L33: 1.6320 L12: 0.0434 REMARK 3 L13: -0.3076 L23: 0.2658 REMARK 3 S TENSOR REMARK 3 S11: -0.4372 S12: 0.6377 S13: 0.3382 REMARK 3 S21: 0.2268 S22: 0.3425 S23: 0.0825 REMARK 3 S31: 0.0109 S32: 0.0562 S33: 0.0661 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.05805 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LISO4 0.1 M NAACETATE PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.08250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.22455 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.14867 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 54.08250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 31.22455 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.14867 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 54.08250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 31.22455 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.14867 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.44909 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.29733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 62.44909 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.29733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 62.44909 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.29733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLU A 161 REMARK 465 GLY A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 GLY B 157 REMARK 465 SER B 158 REMARK 465 SER B 159 REMARK 465 GLY B 160 REMARK 465 GLU B 161 REMARK 465 GLY B 162 REMARK 465 GLN B 163 REMARK 465 LYS B 164 REMARK 465 LYS B 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 165 OD1 REMARK 470 ARG A 180 CZ NH1 NH2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ARG A 199 CD NE CZ NH1 NH2 REMARK 470 ARG A 203 CZ NH1 NH2 REMARK 470 LYS A 204 CE NZ REMARK 470 LYS A 219 CE NZ REMARK 470 GLU A 228 CD OE1 OE2 REMARK 470 LEU A 246 CD2 REMARK 470 TYR A 248 OH REMARK 470 GLN A 256 CD OE1 NE2 REMARK 470 ARG A 282 CZ NH1 NH2 REMARK 470 GLN A 289 CD OE1 NE2 REMARK 470 GLN A 301 CG CD OE1 NE2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 ASP B 165 CB CG OD1 OD2 REMARK 470 GLN B 174 NE2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 GLU B 191 CD OE1 OE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 GLU B 225 CD OE1 OE2 REMARK 470 GLN B 289 CD OE1 NE2 REMARK 470 GLU B 292 OE2 REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 170 CG REMARK 480 ARG B 167 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 425 O HOH B 439 1.95 REMARK 500 O ILE A 230 NH2 ARG A 297 1.98 REMARK 500 O2 SO4 B 357 O HOH B 400 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 434 O HOH B 435 2455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PDK RELATED DB: PDB REMARK 900 8PDK CONTAINS WILDTYPE PROTEIN DBREF 8PFA A 159 302 UNP Q72H73 Q72H73_THET2 159 302 DBREF 8PFA B 159 302 UNP Q72H73 Q72H73_THET2 159 302 SEQADV 8PFA GLY A 157 UNP Q72H73 EXPRESSION TAG SEQADV 8PFA SER A 158 UNP Q72H73 EXPRESSION TAG SEQADV 8PFA ARG A 167 UNP Q72H73 LYS 167 ENGINEERED MUTATION SEQADV 8PFA GLY B 157 UNP Q72H73 EXPRESSION TAG SEQADV 8PFA SER B 158 UNP Q72H73 EXPRESSION TAG SEQADV 8PFA ARG B 167 UNP Q72H73 LYS 167 ENGINEERED MUTATION SEQRES 1 A 146 GLY SER SER GLY GLU GLY GLN LYS ASP LEU ARG LEU GLY SEQRES 2 A 146 GLU LEU LEU LEU GLN LYS GLY TRP ILE SER ARG GLU ALA SEQRES 3 A 146 LEU GLU GLU ALA LEU VAL GLU GLN GLU LYS THR GLY ASP SEQRES 4 A 146 LEU LEU GLY ARG ILE LEU VAL ARG LYS GLY LEU PRO GLU SEQRES 5 A 146 GLU ALA LEU TYR ARG ALA LEU ALA GLU GLN LYS GLY LEU SEQRES 6 A 146 GLU PHE LEU GLU SER THR GLU GLY ILE VAL PRO ASP PRO SEQRES 7 A 146 SER ALA ALA LEU LEU LEU LEU ARG SER ASP ALA LEU ARG SEQRES 8 A 146 TYR GLY ALA VAL PRO ILE GLY PHE GLN ASN GLY GLU VAL SEQRES 9 A 146 GLU VAL VAL LEU SER ASP PRO ARG HIS LYS GLU ALA VAL SEQRES 10 A 146 ALA GLN LEU LEU ASN ARG PRO ALA ARG PHE TYR LEU ALA SEQRES 11 A 146 LEU PRO GLN ALA TRP GLU GLU LEU PHE ARG ARG ALA TYR SEQRES 12 A 146 PRO GLN LYS SEQRES 1 B 146 GLY SER SER GLY GLU GLY GLN LYS ASP LEU ARG LEU GLY SEQRES 2 B 146 GLU LEU LEU LEU GLN LYS GLY TRP ILE SER ARG GLU ALA SEQRES 3 B 146 LEU GLU GLU ALA LEU VAL GLU GLN GLU LYS THR GLY ASP SEQRES 4 B 146 LEU LEU GLY ARG ILE LEU VAL ARG LYS GLY LEU PRO GLU SEQRES 5 B 146 GLU ALA LEU TYR ARG ALA LEU ALA GLU GLN LYS GLY LEU SEQRES 6 B 146 GLU PHE LEU GLU SER THR GLU GLY ILE VAL PRO ASP PRO SEQRES 7 B 146 SER ALA ALA LEU LEU LEU LEU ARG SER ASP ALA LEU ARG SEQRES 8 B 146 TYR GLY ALA VAL PRO ILE GLY PHE GLN ASN GLY GLU VAL SEQRES 9 B 146 GLU VAL VAL LEU SER ASP PRO ARG HIS LYS GLU ALA VAL SEQRES 10 B 146 ALA GLN LEU LEU ASN ARG PRO ALA ARG PHE TYR LEU ALA SEQRES 11 B 146 LEU PRO GLN ALA TRP GLU GLU LEU PHE ARG ARG ALA TYR SEQRES 12 B 146 PRO GLN LYS HET C2E A 350 46 HET SO4 A 351 5 HET SO4 A 352 5 HET SO4 A 353 5 HET ACT A 354 4 HET ACT A 355 4 HET ACT A 356 4 HET C2E B 350 46 HET SO4 B 351 5 HET SO4 B 352 5 HET SO4 B 353 5 HET SO4 B 354 5 HET SO4 B 355 5 HET SO4 B 356 5 HET SO4 B 357 5 HET ACT B 358 4 HET ACT B 359 4 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 4 SO4 10(O4 S 2-) FORMUL 7 ACT 5(C2 H3 O2 1-) FORMUL 20 HOH *96(H2 O) HELIX 1 AA1 ARG A 167 GLY A 176 1 10 HELIX 2 AA2 SER A 179 GLY A 194 1 16 HELIX 3 AA3 LEU A 196 LYS A 204 1 9 HELIX 4 AA4 PRO A 207 LYS A 219 1 13 HELIX 5 AA5 ASP A 233 LEU A 238 1 6 HELIX 6 AA6 LEU A 241 GLY A 249 1 9 HELIX 7 AA7 ASP A 266 ARG A 268 5 3 HELIX 8 AA8 HIS A 269 ASN A 278 1 10 HELIX 9 AA9 LEU A 287 TYR A 299 1 13 HELIX 10 AB1 ARG B 167 GLY B 176 1 10 HELIX 11 AB2 SER B 179 GLY B 194 1 16 HELIX 12 AB3 LEU B 196 LYS B 204 1 9 HELIX 13 AB4 PRO B 207 GLY B 220 1 14 HELIX 14 AB5 ASP B 233 LEU B 238 1 6 HELIX 15 AB6 LEU B 241 GLY B 249 1 9 HELIX 16 AB7 ASP B 266 ARG B 268 5 3 HELIX 17 AB8 HIS B 269 ASN B 278 1 10 HELIX 18 AB9 LEU B 287 TYR B 299 1 13 SHEET 1 AA1 4 GLU A 222 LEU A 224 0 SHEET 2 AA1 4 ALA A 281 ALA A 286 1 O LEU A 285 N LEU A 224 SHEET 3 AA1 4 GLU A 259 LEU A 264 1 N LEU A 264 O TYR A 284 SHEET 4 AA1 4 ALA A 250 GLN A 256 -1 N GLY A 254 O GLU A 261 SHEET 1 AA2 4 GLU B 222 PHE B 223 0 SHEET 2 AA2 4 ALA B 281 LEU B 285 1 O PHE B 283 N GLU B 222 SHEET 3 AA2 4 GLU B 259 LEU B 264 1 N LEU B 264 O TYR B 284 SHEET 4 AA2 4 ALA B 250 GLN B 256 -1 N GLY B 254 O GLU B 261 CRYST1 108.165 108.165 87.446 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009245 0.005338 0.000000 0.00000 SCALE2 0.000000 0.010675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011436 0.00000