HEADER PROTEIN BINDING 15-JUN-23 8PFD TITLE CRYSTAL STRUCTURE OF BINARY COMPLEX BETWEEN ASTER YELLOWS WITCHES'- TITLE 2 BROOM PHYTOPLASMA EFFECTOR SAP05 AND THE VON WILLEBRAND FACTOR TYPE A TITLE 3 DOMAIN OF THE PROTEASOMAL UBIQUITIN RECEPTOR RPN10 FROM ARABIDOPSIS TITLE 4 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUENCE-VARIABLE MOSAIC (SVM) SIGNAL SEQUENCE DOMAIN- COMPND 3 CONTAINING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CRYSTALLIZED SEQUENCE CORRESPONDS TO RESIDUES 33- COMPND 7 135 OF THE FULL 135-RESIDUE WILD-TYPE SEQUENCE, WHICH IS PREPENDED BY COMPND 8 A GLY-PRO DIPEPTIDE LEFT OVER FROM CLEAVAGE OF THE AFFINITY TAG.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT RPN10,ATRPN10,26S COMPND 13 PROTEASOME REGULATORY SUBUNIT S5A HOMOLOG,MULTIUBIQUITIN CHAIN- COMPND 14 BINDING PROTEIN 1,ATMCB1; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: THE CRYSTALLIZED SEQUENCE CORRESPONDS TO RESIDUES 2- COMPND 17 193 OF THE FULL 386-RESIDUE WILD-TYPE SEQUENCE. THE NATIVE N-TERMINAL COMPND 18 MET IS REPLACED BY A GLY-PRO DIPEPTIDE LEFT OVER FROM CLEAVAGE OF THE COMPND 19 AFFINITY TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASTER YELLOWS WITCHES'-BROOM PHYTOPLASMA AYWB; SOURCE 3 ORGANISM_TAXID: 322098; SOURCE 4 GENE: AYWB_032; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: POPINF; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: RPN10, MBP1, MCB1, AT4G38630, F20M13.190, T9A14.7; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: POPINF KEYWDS TARGETED PROTEIN DEGRADATION, UBIQUITIN-INDEPENDENT, BACTERIAL KEYWDS 2 EFFECTOR PROTEIN, 26S PROTEASOME, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.HUANG,Q.LIU,A.MAQBOOL,C.E.M.STEVENSON,D.M.LAWSON,S.KAMOUN, AUTHOR 2 S.A.HOGENHOUT REVDAT 3 07-FEB-24 8PFD 1 REMARK REVDAT 2 13-DEC-23 8PFD 1 JRNL REVDAT 1 05-JUL-23 8PFD 0 JRNL AUTH Q.LIU,A.MAQBOOL,F.G.MIRKIN,Y.SINGH,C.E.M.STEVENSON, JRNL AUTH 2 D.M.LAWSON,S.KAMOUN,W.HUANG,S.A.HOGENHOUT JRNL TITL BIMODULAR ARCHITECTURE OF BACTERIAL EFFECTOR SAP05 THAT JRNL TITL 2 DRIVES UBIQUITIN-INDEPENDENT TARGETED PROTEIN DEGRADATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 64120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 38039272 JRNL DOI 10.1073/PNAS.2310664120 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.LIU,A.MAQBOOL,F.G.MIRKIN,Y.SINGH,C.E.M.STEVENSON, REMARK 1 AUTH 2 D.M.LAWSON,S.KAMOUN,W.HUANG,S.A.HOGENHOUT REMARK 1 TITL BIMODULAR ARCHITECTURE OF BACTERIAL EFFECTOR SAP05 DRIVES REMARK 1 TITL 2 UBIQUITIN-INDEPENDENT TARGETED PROTEIN DEGRADATION REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2023.06.19.545293 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2200 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -1.29000 REMARK 3 B33 (A**2) : 1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.297 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2235 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2165 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3021 ; 1.442 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4972 ; 1.184 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 7.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;35.891 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;15.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2537 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 495 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 1.509 ; 4.145 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1135 ; 1.509 ; 4.144 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1413 ; 2.285 ; 6.209 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1414 ; 2.285 ; 6.210 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1099 ; 1.512 ; 4.289 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1100 ; 1.512 ; 4.290 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 2.427 ; 6.378 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2400 ; 4.398 ;49.121 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2399 ; 4.396 ;49.110 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 4.743 15.490 9.960 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.2157 REMARK 3 T33: 0.0358 T12: -0.0288 REMARK 3 T13: -0.0278 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 3.2866 L22: 7.3183 REMARK 3 L33: 4.8428 L12: -2.2575 REMARK 3 L13: 0.8457 L23: -0.5820 REMARK 3 S TENSOR REMARK 3 S11: -0.2078 S12: -0.2846 S13: 0.2419 REMARK 3 S21: 0.4712 S22: 0.0469 S23: -0.4222 REMARK 3 S31: -0.2047 S32: 0.0558 S33: 0.1608 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 192 REMARK 3 ORIGIN FOR THE GROUP (A): 14.093 -11.559 11.076 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.2966 REMARK 3 T33: 0.0180 T12: 0.0423 REMARK 3 T13: -0.0269 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.8105 L22: 6.3443 REMARK 3 L33: 1.5317 L12: -1.1665 REMARK 3 L13: 0.2350 L23: -0.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: -0.3510 S13: -0.0949 REMARK 3 S21: 0.6999 S22: 0.1428 S23: -0.2462 REMARK 3 S31: 0.0701 S32: 0.1567 S33: -0.0174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 68.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 2.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.29950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 PRO A 34 REMARK 465 ASN A 35 REMARK 465 GLN A 134 REMARK 465 LYS A 135 REMARK 465 GLY B 0 REMARK 465 ASP B 20 REMARK 465 TYR B 21 REMARK 465 SER B 22 REMARK 465 ALA B 178 REMARK 465 ASN B 179 REMARK 465 GLY B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 56 CE NZ REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS B 57 CE NZ REMARK 470 LYS B 122 CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 LEU B 186 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 55 -113.94 -109.79 REMARK 500 GLU B 146 79.13 -69.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PFD A 33 135 UNP Q2NK94 Q2NK94_AYWBP 33 135 DBREF 8PFD B 2 193 UNP P55034 PSMD4_ARATH 2 193 SEQADV 8PFD GLY A 31 UNP Q2NK94 EXPRESSION TAG SEQADV 8PFD PRO A 32 UNP Q2NK94 EXPRESSION TAG SEQADV 8PFD GLY B 0 UNP P55034 EXPRESSION TAG SEQADV 8PFD PRO B 1 UNP P55034 EXPRESSION TAG SEQRES 1 A 105 GLY PRO ALA PRO ASN GLU GLU PHE VAL GLY ASP MET ARG SEQRES 2 A 105 ILE VAL ASN VAL ASN LEU SER ASN ILE ASP ILE LEU LYS SEQRES 3 A 105 LYS HIS GLU THR PHE LYS LYS TYR PHE ASP PHE THR LEU SEQRES 4 A 105 THR GLY PRO ARG TYR ASN GLY ASN ILE ALA GLU PHE ALA SEQRES 5 A 105 MET ILE TRP LYS ILE LYS ASN PRO PRO LEU ASN LEU LEU SEQRES 6 A 105 GLY VAL PHE PHE ASP ASP GLY THR ARG ASP ASP GLU ASP SEQRES 7 A 105 ASP LYS TYR ILE LEU GLU GLU LEU LYS GLN ILE GLY ASN SEQRES 8 A 105 GLY ALA LYS ASN MET TYR ILE PHE TRP GLN TYR GLU GLN SEQRES 9 A 105 LYS SEQRES 1 B 194 GLY PRO VAL LEU GLU ALA THR MET ILE CYS ILE ASP ASN SEQRES 2 B 194 SER GLU TRP MET ARG ASN GLY ASP TYR SER PRO SER ARG SEQRES 3 B 194 LEU GLN ALA GLN THR GLU ALA VAL ASN LEU LEU CYS GLY SEQRES 4 B 194 ALA LYS THR GLN SER ASN PRO GLU ASN THR VAL GLY ILE SEQRES 5 B 194 LEU THR MET ALA GLY LYS GLY VAL ARG VAL LEU THR THR SEQRES 6 B 194 PRO THR SER ASP LEU GLY LYS ILE LEU ALA CYS MET HIS SEQRES 7 B 194 GLY LEU ASP VAL GLY GLY GLU ILE ASN LEU THR ALA ALA SEQRES 8 B 194 ILE GLN ILE ALA GLN LEU ALA LEU LYS HIS ARG GLN ASN SEQRES 9 B 194 LYS ASN GLN ARG GLN ARG ILE ILE VAL PHE ALA GLY SER SEQRES 10 B 194 PRO ILE LYS TYR GLU LYS LYS ALA LEU GLU ILE VAL GLY SEQRES 11 B 194 LYS ARG LEU LYS LYS ASN SER VAL SER LEU ASP ILE VAL SEQRES 12 B 194 ASN PHE GLY GLU ASP ASP ASP GLU GLU LYS PRO GLN LYS SEQRES 13 B 194 LEU GLU ALA LEU LEU THR ALA VAL ASN ASN ASN ASP GLY SEQRES 14 B 194 SER HIS ILE VAL HIS VAL PRO SER GLY ALA ASN ALA LEU SEQRES 15 B 194 SER ASP VAL LEU LEU SER THR PRO VAL PHE THR GLY FORMUL 3 HOH *30(H2 O) HELIX 1 AA1 ASN A 51 HIS A 58 5 8 HELIX 2 AA2 THR A 60 TYR A 64 5 5 HELIX 3 AA3 ILE A 112 LYS A 117 1 6 HELIX 4 AA4 SER B 13 ASN B 18 5 6 HELIX 5 AA5 SER B 24 ASN B 44 1 21 HELIX 6 AA6 ASP B 68 CYS B 75 1 8 HELIX 7 AA7 ASN B 86 HIS B 100 1 15 HELIX 8 AA8 GLU B 121 ASN B 135 1 15 HELIX 9 AA9 GLU B 150 ASN B 164 1 15 HELIX 10 AB1 LEU B 181 THR B 188 1 8 SHEET 1 AA1 4 PHE A 38 VAL A 39 0 SHEET 2 AA1 4 MET A 42 LEU A 49 -1 O MET A 42 N VAL A 39 SHEET 3 AA1 4 ASN A 125 GLN A 131 1 O TRP A 130 N LEU A 49 SHEET 4 AA1 4 LEU A 94 PHE A 99 -1 N LEU A 95 O PHE A 129 SHEET 1 AA2 2 ARG A 73 TYR A 74 0 SHEET 2 AA2 2 TRP A 85 LYS A 86 -1 O TRP A 85 N TYR A 74 SHEET 1 AA3 6 ARG B 60 THR B 66 0 SHEET 2 AA3 6 THR B 48 THR B 53 -1 N VAL B 49 O THR B 66 SHEET 3 AA3 6 GLU B 4 ILE B 10 1 N ILE B 10 O LEU B 52 SHEET 4 AA3 6 ARG B 107 ALA B 114 1 O ILE B 111 N CYS B 9 SHEET 5 AA3 6 VAL B 137 ASN B 143 1 O VAL B 142 N VAL B 112 SHEET 6 AA3 6 HIS B 170 HIS B 173 1 O VAL B 172 N ASN B 143 CRYST1 42.391 68.599 49.851 90.00 92.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023590 0.000000 0.001144 0.00000 SCALE2 0.000000 0.014577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020083 0.00000