data_8PFU # _entry.id 8PFU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PFU pdb_00008pfu 10.2210/pdb8pfu/pdb WWPDB D_1292131269 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PFU _pdbx_database_status.recvd_initial_deposition_date 2023-06-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Teran, A.' 1 ? 'Ferraro, G.' 2 ? 'Merlino, A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Inorg Chem Front' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Charge effect in protein metalation reactions by diruthenium complexes' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D3QI01192E _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Herrero Dominguez, S.' 1 ? primary 'Teran, A.' 2 ? primary 'Ferraro, G.' 3 ? primary 'Sanchez-Pelaez, A.E.' 4 ? primary 'Merlino, A.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8PFU _cell.details ? _cell.formula_units_Z ? _cell.length_a 78.060 _cell.length_a_esd ? _cell.length_b 78.060 _cell.length_b_esd ? _cell.length_c 37.470 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8PFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 14331.160 1 3.2.1.17 ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'NITRATE ION' 62.005 7 ? ? ? ? 4 non-polymer syn '6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one' 528.392 4 ? ? ? ? 5 non-polymer syn 'CARBONATE ION' 60.009 1 ? ? ? ? 6 water nat water 18.015 141 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C,Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 129 _entity_src_nat.common_name chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 19 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PFU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO3 non-polymer . 'CARBONATE ION' ? 'C O3 -2' 60.009 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YJT non-polymer . '6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one' ? 'C14 H12 F2 N2 O5 Ru2' 528.392 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PFU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-07-15 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ELETTRA BEAMLINE 11.2C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 11.2C _diffrn_source.pdbx_synchrotron_site ELETTRA # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8PFU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.18 _reflns.d_resolution_low 55.20 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 38622 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 42.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.18 _reflns_shell.d_res_low 1.20 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1683 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.750 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.003 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.023 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.023 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.045 _refine.B_iso_max ? _refine.B_iso_mean 16.845 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.965 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8PFU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.180 _refine.ls_d_res_low 55.197 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 38106 _refine.ls_number_reflns_R_free 1943 _refine.ls_number_reflns_R_work 36163 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.641 _refine.ls_percent_reflns_R_free 5.099 _refine.ls_R_factor_all 0.180 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2016 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1788 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.044 _refine.pdbx_overall_ESU_R_Free 0.046 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.695 _refine.overall_SU_ML 0.032 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1183 _refine_hist.d_res_high 1.180 _refine_hist.d_res_low 55.197 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.011 1150 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 1032 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.000 0.001 4 ? r_ext_dist_refined_b ? ? 'X-RAY DIFFRACTION' ? 1.827 1.635 1554 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.606 1.585 2358 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.472 5.000 146 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 6.858 5.000 14 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.400 10.000 189 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.707 10.000 57 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.090 0.200 155 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 1485 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 319 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.250 0.200 257 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.203 0.200 904 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.185 0.200 550 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.084 0.200 569 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.174 0.200 72 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.075 0.200 3 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.113 0.200 9 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.165 0.200 68 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.110 0.200 51 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.519 1.652 560 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.518 1.650 560 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.178 2.971 714 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.196 2.974 715 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.809 2.022 590 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.572 1.964 562 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 4.138 3.506 840 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.027 3.470 817 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.701 22.120 1413 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 5.380 18.315 1369 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.180 1.211 2806 . 110 2199 82.2880 . 0.313 . . 0.314 . . . . . 0.276 . 20 . 0.939 0.944 0.292 'X-RAY DIFFRACTION' 1.211 1.244 2734 . 147 2571 99.4148 . 0.286 . . 0.287 . . . . . 0.246 . 20 . 0.950 0.953 0.278 'X-RAY DIFFRACTION' 1.244 1.280 2648 . 113 2535 100.0000 . 0.265 . . 0.264 . . . . . 0.218 . 20 . 0.960 0.956 0.288 'X-RAY DIFFRACTION' 1.280 1.319 2595 . 140 2455 100.0000 . 0.260 . . 0.260 . . . . . 0.216 . 20 . 0.963 0.961 0.269 'X-RAY DIFFRACTION' 1.319 1.362 2507 . 144 2363 100.0000 . 0.238 . . 0.236 . . . . . 0.196 . 20 . 0.969 0.959 0.272 'X-RAY DIFFRACTION' 1.362 1.410 2440 . 105 2335 100.0000 . 0.219 . . 0.218 . . . . . 0.177 . 20 . 0.972 0.968 0.251 'X-RAY DIFFRACTION' 1.410 1.463 2355 . 133 2222 100.0000 . 0.211 . . 0.211 . . . . . 0.174 . 20 . 0.973 0.972 0.219 'X-RAY DIFFRACTION' 1.463 1.523 2269 . 118 2151 100.0000 . 0.200 . . 0.199 . . . . . 0.167 . 20 . 0.975 0.973 0.205 'X-RAY DIFFRACTION' 1.523 1.591 2183 . 127 2056 100.0000 . 0.201 . . 0.199 . . . . . 0.171 . 20 . 0.975 0.963 0.241 'X-RAY DIFFRACTION' 1.591 1.668 2101 . 88 2013 100.0000 . 0.183 . . 0.182 . . . . . 0.161 . 20 . 0.979 0.974 0.209 'X-RAY DIFFRACTION' 1.668 1.759 1978 . 96 1882 100.0000 . 0.185 . . 0.183 . . . . . 0.167 . 20 . 0.979 0.967 0.237 'X-RAY DIFFRACTION' 1.759 1.865 1894 . 103 1791 100.0000 . 0.177 . . 0.175 . . . . . 0.168 . 20 . 0.980 0.971 0.215 'X-RAY DIFFRACTION' 1.865 1.994 1784 . 85 1699 100.0000 . 0.174 . . 0.174 . . . . . 0.172 . 20 . 0.982 0.983 0.172 'X-RAY DIFFRACTION' 1.994 2.153 1667 . 94 1573 100.0000 . 0.160 . . 0.158 . . . . . 0.167 . 20 . 0.985 0.979 0.186 'X-RAY DIFFRACTION' 2.153 2.358 1547 . 79 1468 100.0000 . 0.153 . . 0.152 . . . . . 0.167 . 20 . 0.987 0.980 0.168 'X-RAY DIFFRACTION' 2.358 2.636 1411 . 76 1334 99.9291 . 0.151 . . 0.149 . . . . . 0.171 . 20 . 0.985 0.977 0.193 'X-RAY DIFFRACTION' 2.636 3.043 1238 . 57 1181 100.0000 . 0.156 . . 0.155 . . . . . 0.185 . 20 . 0.985 0.978 0.176 'X-RAY DIFFRACTION' 3.043 3.724 1091 . 54 1037 100.0000 . 0.160 . . 0.158 . . . . . 0.194 . 20 . 0.983 0.977 0.186 'X-RAY DIFFRACTION' 3.724 5.254 854 . 44 809 99.8829 . 0.159 . . 0.158 . . . . . 0.221 . 20 . 0.985 0.977 0.184 'X-RAY DIFFRACTION' 5.254 55.197 520 . 28 484 98.4615 . 0.256 . . 0.257 . . . . . 0.327 . 20 . 0.963 0.949 0.242 # _struct.entry_id 8PFU _struct.title 'X-ray structure of the adduct formed upon reaction of Lysozyme with K3[Ru2(CO3)4] in condition A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PFU _struct_keywords.text 'Ruthenium, Protein interaction, Metallodrug, Diruthenium, Hydrolase, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 AA2 ASN A 19 ? TYR A 23 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 AA3 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 AA4 PRO A 79 ? SER A 85 ? PRO A 79 SER A 85 5 ? 7 HELX_P HELX_P5 AA5 ILE A 88 ? SER A 100 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P6 AA6 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 AA7 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 AA8 ASP A 119 ? ARG A 125 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.005 ? ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc1 metalc ? ? A SER 60 O ? ? ? 1_555 B NA . NA ? ? A SER 60 A NA 201 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc2 metalc ? ? A CYS 64 O ? ? ? 1_555 B NA . NA ? ? A CYS 64 A NA 201 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc3 metalc ? ? A SER 72 OG ? ? ? 1_555 B NA . NA ? ? A SER 72 A NA 201 1_555 ? ? ? ? ? ? ? 2.477 ? ? metalc4 metalc ? ? A ARG 73 O A ? ? 1_555 B NA . NA ? ? A ARG 73 A NA 201 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc5 metalc ? ? A ARG 73 O B ? ? 1_555 B NA . NA ? ? A ARG 73 A NA 201 1_555 ? ? ? ? ? ? ? 2.460 ? ? metalc6 metalc ? ? A ASP 101 OD1 B ? ? 1_555 L YJT . RU1 ? ? A ASP 101 A YJT 211 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc7 metalc ? ? A ASP 101 OD2 B ? ? 1_555 L YJT . RU2 ? ? A ASP 101 A YJT 211 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc8 metalc ? ? A ASN 103 OD1 A ? ? 1_555 K YJT . RU2 ? ? A ASN 103 A YJT 210 1_555 ? ? ? ? ? ? ? 2.054 ? ? metalc9 metalc ? ? A ASN 103 OD1 A ? ? 1_555 K YJT . RU1 ? ? A ASN 103 A YJT 210 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc10 metalc ? ? A ASN 103 ND2 A ? ? 1_555 K YJT . RU2 ? ? A ASN 103 A YJT 210 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc11 metalc ? ? A LEU 129 O ? ? ? 1_555 J YJT . RU1 ? ? A LEU 129 A YJT 209 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc12 metalc ? ? A LEU 129 O ? ? ? 1_555 J YJT . RU2 ? ? A LEU 129 A YJT 209 1_555 ? ? ? ? ? ? ? 2.498 ? ? metalc13 metalc ? ? A LEU 129 OXT ? ? ? 1_555 J YJT . RU2 ? ? A LEU 129 A YJT 209 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc14 metalc ? ? A LEU 129 OXT ? ? ? 1_555 J YJT . RU2 ? ? A LEU 129 A YJT 209 7_554 ? ? ? ? ? ? ? 2.480 ? ? metalc15 metalc ? ? B NA . NA ? ? ? 1_555 C NO3 . O3 ? ? A NA 201 A NO3 202 1_555 ? ? ? ? ? ? ? 2.583 ? ? metalc16 metalc ? ? B NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 201 A HOH 308 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc17 metalc ? ? J YJT . RU1 ? ? ? 1_555 N CO3 . O1 ? ? A YJT 209 A CO3 213 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc18 metalc ? ? J YJT . RU2 ? ? ? 1_555 N CO3 . O3 ? ? A YJT 209 A CO3 213 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc19 metalc ? ? K YJT . RU2 ? ? ? 1_555 O HOH . O ? ? A YJT 210 A HOH 435 1_555 ? ? ? ? ? ? ? 2.479 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 AA1 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 AA1 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 AA1 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # _atom_sites.entry_id 8PFU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012811 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026688 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 F 9 9 3.5395 10.2825 2.6414 4.2944 1.5171 0.2615 1.0244 26.1476 0.3057 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 NA 11 11 4.7659 3.2850 3.1758 8.8422 1.2683 0.3136 1.1136 129.4240 0.7359 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 RU 44 44 19.2695 0.8085 12.9196 8.4347 4.8639 24.7997 1.5677 94.2928 4.6906 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0555 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n # _pdbx_contact_author.id 4 _pdbx_contact_author.email aaronter@ucm.es _pdbx_contact_author.name_first Aaron _pdbx_contact_author.name_last Teran _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6126-6230 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 131 NA NA A . C 3 NO3 1 202 1 NO3 NO3 A . D 3 NO3 1 203 2 NO3 NO3 A . E 3 NO3 1 204 4 NO3 NO3 A . F 3 NO3 1 205 6 NO3 NO3 A . G 3 NO3 1 206 7 NO3 NO3 A . H 3 NO3 1 207 8 NO3 NO3 A . I 3 NO3 1 208 9 NO3 NO3 A . J 4 YJT 1 209 1 YJT TM9 A . K 4 YJT 1 210 2 YJT TM9 A . L 4 YJT 1 211 3 YJT TM9 A . M 4 YJT 1 212 4 YJT TM9 A . N 5 CO3 1 213 3 CO3 CO3 A . O 6 HOH 1 301 156 HOH HOH A . O 6 HOH 2 302 69 HOH HOH A . O 6 HOH 3 303 30 HOH HOH A . O 6 HOH 4 304 111 HOH HOH A . O 6 HOH 5 305 77 HOH HOH A . O 6 HOH 6 306 140 HOH HOH A . O 6 HOH 7 307 66 HOH HOH A . O 6 HOH 8 308 20 HOH HOH A . O 6 HOH 9 309 82 HOH HOH A . O 6 HOH 10 310 98 HOH HOH A . O 6 HOH 11 311 38 HOH HOH A . O 6 HOH 12 312 95 HOH HOH A . O 6 HOH 13 313 46 HOH HOH A . O 6 HOH 14 314 29 HOH HOH A . O 6 HOH 15 315 169 HOH HOH A . O 6 HOH 16 316 86 HOH HOH A . O 6 HOH 17 317 168 HOH HOH A . O 6 HOH 18 318 17 HOH HOH A . O 6 HOH 19 319 53 HOH HOH A . O 6 HOH 20 320 32 HOH HOH A . O 6 HOH 21 321 165 HOH HOH A . O 6 HOH 22 322 81 HOH HOH A . O 6 HOH 23 323 118 HOH HOH A . O 6 HOH 24 324 51 HOH HOH A . O 6 HOH 25 325 31 HOH HOH A . O 6 HOH 26 326 35 HOH HOH A . O 6 HOH 27 327 121 HOH HOH A . O 6 HOH 28 328 13 HOH HOH A . O 6 HOH 29 329 6 HOH HOH A . O 6 HOH 30 330 123 HOH HOH A . O 6 HOH 31 331 96 HOH HOH A . O 6 HOH 32 332 2 HOH HOH A . O 6 HOH 33 333 112 HOH HOH A . O 6 HOH 34 334 84 HOH HOH A . O 6 HOH 35 335 12 HOH HOH A . O 6 HOH 36 336 7 HOH HOH A . O 6 HOH 37 337 91 HOH HOH A . O 6 HOH 38 338 71 HOH HOH A . O 6 HOH 39 339 3 HOH HOH A . O 6 HOH 40 340 9 HOH HOH A . O 6 HOH 41 341 115 HOH HOH A . O 6 HOH 42 342 23 HOH HOH A . O 6 HOH 43 343 65 HOH HOH A . O 6 HOH 44 344 124 HOH HOH A . O 6 HOH 45 345 147 HOH HOH A . O 6 HOH 46 346 62 HOH HOH A . O 6 HOH 47 347 24 HOH HOH A . O 6 HOH 48 348 127 HOH HOH A . O 6 HOH 49 349 59 HOH HOH A . O 6 HOH 50 350 113 HOH HOH A . O 6 HOH 51 351 39 HOH HOH A . O 6 HOH 52 352 61 HOH HOH A . O 6 HOH 53 353 60 HOH HOH A . O 6 HOH 54 354 172 HOH HOH A . O 6 HOH 55 355 14 HOH HOH A . O 6 HOH 56 356 167 HOH HOH A . O 6 HOH 57 357 70 HOH HOH A . O 6 HOH 58 358 27 HOH HOH A . O 6 HOH 59 359 171 HOH HOH A . O 6 HOH 60 360 1 HOH HOH A . O 6 HOH 61 361 21 HOH HOH A . O 6 HOH 62 362 50 HOH HOH A . O 6 HOH 63 363 52 HOH HOH A . O 6 HOH 64 364 4 HOH HOH A . O 6 HOH 65 365 28 HOH HOH A . O 6 HOH 66 366 64 HOH HOH A . O 6 HOH 67 367 57 HOH HOH A . O 6 HOH 68 368 101 HOH HOH A . O 6 HOH 69 369 34 HOH HOH A . O 6 HOH 70 370 16 HOH HOH A . O 6 HOH 71 371 74 HOH HOH A . O 6 HOH 72 372 132 HOH HOH A . O 6 HOH 73 373 44 HOH HOH A . O 6 HOH 74 374 68 HOH HOH A . O 6 HOH 75 375 100 HOH HOH A . O 6 HOH 76 376 92 HOH HOH A . O 6 HOH 77 377 103 HOH HOH A . O 6 HOH 78 378 144 HOH HOH A . O 6 HOH 79 379 141 HOH HOH A . O 6 HOH 80 380 47 HOH HOH A . O 6 HOH 81 381 40 HOH HOH A . O 6 HOH 82 382 8 HOH HOH A . O 6 HOH 83 383 138 HOH HOH A . O 6 HOH 84 384 131 HOH HOH A . O 6 HOH 85 385 85 HOH HOH A . O 6 HOH 86 386 97 HOH HOH A . O 6 HOH 87 387 89 HOH HOH A . O 6 HOH 88 388 15 HOH HOH A . O 6 HOH 89 389 58 HOH HOH A . O 6 HOH 90 390 63 HOH HOH A . O 6 HOH 91 391 106 HOH HOH A . O 6 HOH 92 392 173 HOH HOH A . O 6 HOH 93 393 22 HOH HOH A . O 6 HOH 94 394 10 HOH HOH A . O 6 HOH 95 395 139 HOH HOH A . O 6 HOH 96 396 90 HOH HOH A . O 6 HOH 97 397 135 HOH HOH A . O 6 HOH 98 398 11 HOH HOH A . O 6 HOH 99 399 149 HOH HOH A . O 6 HOH 100 400 114 HOH HOH A . O 6 HOH 101 401 87 HOH HOH A . O 6 HOH 102 402 43 HOH HOH A . O 6 HOH 103 403 94 HOH HOH A . O 6 HOH 104 404 42 HOH HOH A . O 6 HOH 105 405 162 HOH HOH A . O 6 HOH 106 406 155 HOH HOH A . O 6 HOH 107 407 164 HOH HOH A . O 6 HOH 108 408 130 HOH HOH A . O 6 HOH 109 409 72 HOH HOH A . O 6 HOH 110 410 151 HOH HOH A . O 6 HOH 111 411 137 HOH HOH A . O 6 HOH 112 412 120 HOH HOH A . O 6 HOH 113 413 146 HOH HOH A . O 6 HOH 114 414 161 HOH HOH A . O 6 HOH 115 415 129 HOH HOH A . O 6 HOH 116 416 125 HOH HOH A . O 6 HOH 117 417 160 HOH HOH A . O 6 HOH 118 418 117 HOH HOH A . O 6 HOH 119 419 104 HOH HOH A . O 6 HOH 120 420 143 HOH HOH A . O 6 HOH 121 421 134 HOH HOH A . O 6 HOH 122 422 67 HOH HOH A . O 6 HOH 123 423 163 HOH HOH A . O 6 HOH 124 424 152 HOH HOH A . O 6 HOH 125 425 157 HOH HOH A . O 6 HOH 126 426 145 HOH HOH A . O 6 HOH 127 427 19 HOH HOH A . O 6 HOH 128 428 102 HOH HOH A . O 6 HOH 129 429 76 HOH HOH A . O 6 HOH 130 430 75 HOH HOH A . O 6 HOH 131 431 126 HOH HOH A . O 6 HOH 132 432 154 HOH HOH A . O 6 HOH 133 433 122 HOH HOH A . O 6 HOH 134 434 133 HOH HOH A . O 6 HOH 135 435 170 HOH HOH A . O 6 HOH 136 436 99 HOH HOH A . O 6 HOH 137 437 159 HOH HOH A . O 6 HOH 138 438 142 HOH HOH A . O 6 HOH 139 439 148 HOH HOH A . O 6 HOH 140 440 49 HOH HOH A . O 6 HOH 141 441 48 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -4 ? 1 'SSA (A^2)' 6730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NO3 208 ? I NO3 . 2 1 A NO3 208 ? I NO3 . 3 1 A HOH 340 ? O HOH . 4 1 A HOH 352 ? O HOH . 5 1 A HOH 441 ? O HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 89.0 ? 2 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 86.7 ? 3 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 162.2 ? 4 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O A A ARG 73 ? A ARG 73 ? 1_555 94.1 ? 5 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O A A ARG 73 ? A ARG 73 ? 1_555 94.0 ? 6 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O A A ARG 73 ? A ARG 73 ? 1_555 103.5 ? 7 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 92.5 ? 8 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 94.9 ? 9 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 102.5 ? 10 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O B A ARG 73 ? A ARG 73 ? 1_555 1.9 ? 11 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O3 ? C NO3 . ? A NO3 202 ? 1_555 104.4 ? 12 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O3 ? C NO3 . ? A NO3 202 ? 1_555 86.5 ? 13 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O3 ? C NO3 . ? A NO3 202 ? 1_555 77.8 ? 14 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O3 ? C NO3 . ? A NO3 202 ? 1_555 161.5 ? 15 O B A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O3 ? C NO3 . ? A NO3 202 ? 1_555 163.1 ? 16 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? O HOH . ? A HOH 308 ? 1_555 174.2 ? 17 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? O HOH . ? A HOH 308 ? 1_555 96.7 ? 18 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? O HOH . ? A HOH 308 ? 1_555 87.6 ? 19 O A A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? O HOH . ? A HOH 308 ? 1_555 86.2 ? 20 O B A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? O HOH . ? A HOH 308 ? 1_555 87.7 ? 21 O3 ? C NO3 . ? A NO3 202 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? O HOH . ? A HOH 308 ? 1_555 75.3 ? 22 OD1 B A ASP 101 ? A ASP 101 ? 1_555 RU1 ? L YJT . ? A YJT 211 ? 1_555 RU2 ? L YJT . ? A YJT 211 ? 1_555 90.4 ? 23 OD2 B A ASP 101 ? A ASP 101 ? 1_555 RU2 ? L YJT . ? A YJT 211 ? 1_555 RU1 ? L YJT . ? A YJT 211 ? 1_555 86.7 ? 24 OD1 A A ASN 103 ? A ASN 103 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 RU1 ? K YJT . ? A YJT 210 ? 1_555 62.0 ? 25 OD1 A A ASN 103 ? A ASN 103 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 ND2 A A ASN 103 ? A ASN 103 ? 1_555 62.1 ? 26 RU1 ? K YJT . ? A YJT 210 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 ND2 A A ASN 103 ? A ASN 103 ? 1_555 109.3 ? 27 OD1 A A ASN 103 ? A ASN 103 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 O ? O HOH . ? A HOH 435 ? 1_555 139.2 ? 28 RU1 ? K YJT . ? A YJT 210 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 O ? O HOH . ? A HOH 435 ? 1_555 82.9 ? 29 ND2 A A ASN 103 ? A ASN 103 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 O ? O HOH . ? A HOH 435 ? 1_555 117.8 ? 30 OD1 A A ASN 103 ? A ASN 103 ? 1_555 RU1 ? K YJT . ? A YJT 210 ? 1_555 RU2 ? K YJT . ? A YJT 210 ? 1_555 53.7 ? 31 O ? A LEU 129 ? A LEU 129 ? 1_555 RU1 ? J YJT . ? A YJT 209 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 66.8 ? 32 O ? A LEU 129 ? A LEU 129 ? 1_555 RU1 ? J YJT . ? A YJT 209 ? 1_555 O1 ? N CO3 . ? A CO3 213 ? 1_555 145.2 ? 33 RU2 ? J YJT . ? A YJT 209 ? 1_555 RU1 ? J YJT . ? A YJT 209 ? 1_555 O1 ? N CO3 . ? A CO3 213 ? 1_555 83.9 ? 34 O ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 RU1 ? J YJT . ? A YJT 209 ? 1_555 55.9 ? 35 O ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 OXT ? A LEU 129 ? A LEU 129 ? 1_555 55.4 ? 36 RU1 ? J YJT . ? A YJT 209 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 OXT ? A LEU 129 ? A LEU 129 ? 1_555 111.2 ? 37 O ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 OXT ? A LEU 129 ? A LEU 129 ? 1_555 55.4 ? 38 RU1 ? J YJT . ? A YJT 209 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 OXT ? A LEU 129 ? A LEU 129 ? 1_555 111.2 ? 39 OXT ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 OXT ? A LEU 129 ? A LEU 129 ? 1_555 0.0 ? 40 O ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 O3 ? N CO3 . ? A CO3 213 ? 1_555 143.5 ? 41 RU1 ? J YJT . ? A YJT 209 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 O3 ? N CO3 . ? A CO3 213 ? 1_555 88.0 ? 42 OXT ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 O3 ? N CO3 . ? A CO3 213 ? 1_555 160.8 ? 43 OXT ? A LEU 129 ? A LEU 129 ? 1_555 RU2 ? J YJT . ? A YJT 209 ? 1_555 O3 ? N CO3 . ? A CO3 213 ? 1_555 160.8 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0403 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8PFU _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 112 ? B CZ A ARG 112 ? B NH1 A ARG 112 ? B 123.63 120.30 3.33 0.50 N 2 1 NE A ARG 112 ? B CZ A ARG 112 ? B NH2 A ARG 112 ? B 116.95 120.30 -3.35 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 68 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -142.02 _pdbx_validate_torsion.psi 26.10 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 45 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.092 _pdbx_validate_planes.type SIDE_CHAIN # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A YJT 212 ? C2 ? M YJT 1 C2 2 1 N 1 A YJT 212 ? C4 ? M YJT 1 C4 3 1 N 1 A YJT 212 ? O4 ? M YJT 1 O4 4 1 N 1 A YJT 212 ? C5 ? M YJT 1 C5 5 1 N 1 A YJT 212 ? C6 ? M YJT 1 C6 6 1 N 1 A YJT 212 ? N2 ? M YJT 1 N2 7 1 N 1 A YJT 212 ? C3 ? M YJT 1 C3 8 1 N 1 A YJT 212 ? O3 ? M YJT 1 O3 9 1 N 1 A YJT 212 ? C1 ? M YJT 1 C1 10 1 N 1 A YJT 212 ? O1 ? M YJT 1 O1 11 1 N 1 A YJT 212 ? F1 ? M YJT 1 F1 12 1 N 1 A YJT 212 ? F2 ? M YJT 1 F2 13 1 N 1 A YJT 212 ? O2 ? M YJT 1 O2 14 1 N 1 A YJT 212 ? N1 ? M YJT 1 N1 15 1 N 1 A YJT 212 ? C7 ? M YJT 1 C7 16 1 N 1 A YJT 212 ? C14 ? M YJT 1 C14 17 1 N 1 A YJT 212 ? C11 ? M YJT 1 C11 18 1 N 1 A YJT 212 ? C8 ? M YJT 1 C8 19 1 N 1 A YJT 212 ? C10 ? M YJT 1 C10 20 1 N 1 A YJT 212 ? C9 ? M YJT 1 C9 21 1 N 1 A YJT 212 ? C12 ? M YJT 1 C12 22 1 N 1 A YJT 212 ? C13 ? M YJT 1 C13 23 1 N 1 A YJT 212 ? O7 ? M YJT 1 O7 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id YJT _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id YJT _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'NITRATE ION' NO3 4 '6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one' YJT 5 'CARBONATE ION' CO3 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 193L _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #