data_8PFX # _entry.id 8PFX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PFX pdb_00008pfx 10.2210/pdb8pfx/pdb WWPDB D_1292131273 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PFX _pdbx_database_status.recvd_initial_deposition_date 2023-06-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Teran, A.' 1 ? 'Ferraro, G.' 2 ? 'Merlino, A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Inorg Chem Front' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Charge effect in protein metalation reactions by diruthenium complexes' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D3QI01192E _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Herrero Dominguez, S.' 1 ? primary 'Teran, A.' 2 ? primary 'Ferraro, G.' 3 ? primary 'Sanchez-Pelaez, A.E.' 4 ? primary 'Merlino, A.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8PFX _cell.details ? _cell.formula_units_Z ? _cell.length_a 76.720 _cell.length_a_esd ? _cell.length_b 76.720 _cell.length_b_esd ? _cell.length_c 38.390 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8PFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 14331.160 1 3.2.1.17 ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 4 non-polymer syn 'FORMIC ACID' 46.025 2 ? ? ? ? 5 non-polymer syn '6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one' 528.392 3 ? ? ? ? 6 water nat water 18.015 137 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C,Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 129 _entity_src_nat.common_name chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 19 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PFX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YJT non-polymer . '6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one' ? 'C14 H12 F2 N2 O5 Ru2' 528.392 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PFX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2 M sodium formate and 0.1 M Hepes, pH 7.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-06-13 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ELETTRA BEAMLINE 11.2C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 11.2C _diffrn_source.pdbx_synchrotron_site ELETTRA # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8PFX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.03 _reflns.d_resolution_low 38.36 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 57486 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 33.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.03 _reflns_shell.d_res_low 1.04 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2835 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.858 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.753 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.025 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] -0.025 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] 0.050 _refine.B_iso_max ? _refine.B_iso_mean 12.285 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8PFX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.030 _refine.ls_d_res_low 38.36 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 55049 _refine.ls_number_reflns_R_free 2721 _refine.ls_number_reflns_R_work 52328 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.391 _refine.ls_percent_reflns_R_free 4.943 _refine.ls_R_factor_all 0.193 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2144 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1920 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.033 _refine.pdbx_overall_ESU_R_Free 0.035 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.455 _refine.overall_SU_ML 0.024 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1189 _refine_hist.d_res_high 1.030 _refine_hist.d_res_low 38.36 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.011 1133 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 1018 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.933 1.680 1540 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.635 1.581 2324 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.993 5.000 137 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 10.403 5.000 13 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.733 10.000 181 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.482 10.000 55 ? r_dihedral_angle_6_deg ? ? 'X-RAY DIFFRACTION' ? 0.102 0.200 155 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 1412 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 307 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.249 0.200 271 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.204 0.200 936 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.186 0.200 539 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.081 0.200 558 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.198 0.200 79 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.030 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.061 0.200 3 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.185 0.200 24 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.206 0.200 69 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.295 0.200 45 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 1 ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 1.202 1.134 539 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.201 1.136 540 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.735 2.044 679 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.742 2.046 680 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.397 1.450 594 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.317 1.423 558 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 3.638 2.546 861 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.714 2.494 818 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.310 16.589 1418 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.991 15.122 1348 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.030 1.057 . . 187 3050 77.7004 . . . . 0.298 . . . . . . . . . . . 0.309 'X-RAY DIFFRACTION' 1.057 1.086 . . 145 3363 85.9383 . . . . 0.278 . . . . . . . . . . . 0.274 'X-RAY DIFFRACTION' 1.086 1.117 . . 172 3445 92.0356 . . . . 0.265 . . . . . . . . . . . 0.271 'X-RAY DIFFRACTION' 1.117 1.151 . . 164 3460 95.3684 . . . . 0.249 . . . . . . . . . . . 0.273 'X-RAY DIFFRACTION' 1.151 1.189 . . 198 3498 98.8235 . . . . 0.249 . . . . . . . . . . . 0.257 'X-RAY DIFFRACTION' 1.189 1.231 . . 177 3416 99.9444 . . . . 0.239 . . . . . . . . . . . 0.243 'X-RAY DIFFRACTION' 1.231 1.277 . . 210 3287 99.9143 . . . . 0.233 . . . . . . . . . . . 0.230 'X-RAY DIFFRACTION' 1.277 1.329 . . 174 3167 100.0000 . . . . 0.221 . . . . . . . . . . . 0.246 'X-RAY DIFFRACTION' 1.329 1.388 . . 170 3050 99.9379 . . . . 0.210 . . . . . . . . . . . 0.217 'X-RAY DIFFRACTION' 1.388 1.456 . . 132 2961 99.9677 . . . . 0.197 . . . . . . . . . . . 0.251 'X-RAY DIFFRACTION' 1.456 1.535 . . 147 2823 99.8991 . . . . 0.191 . . . . . . . . . . . 0.230 'X-RAY DIFFRACTION' 1.535 1.628 . . 123 2642 99.9277 . . . . 0.181 . . . . . . . . . . . 0.189 'X-RAY DIFFRACTION' 1.628 1.740 . . 131 2498 100.0000 . . . . 0.181 . . . . . . . . . . . 0.205 'X-RAY DIFFRACTION' 1.740 1.879 . . 118 2336 100.0000 . . . . 0.169 . . . . . . . . . . . 0.187 'X-RAY DIFFRACTION' 1.879 2.058 . . 126 2142 99.9559 . . . . 0.169 . . . . . . . . . . . 0.225 'X-RAY DIFFRACTION' 2.058 2.300 . . 102 1974 100.0000 . . . . 0.157 . . . . . . . . . . . 0.204 'X-RAY DIFFRACTION' 2.300 2.654 . . 80 1773 100.0000 . . . . 0.168 . . . . . . . . . . . 0.195 'X-RAY DIFFRACTION' 2.654 3.247 . . 78 1499 100.0000 . . . . 0.175 . . . . . . . . . . . 0.198 'X-RAY DIFFRACTION' 3.247 4.575 . . 54 1200 100.0000 . . . . 0.156 . . . . . . . . . . . 0.172 'X-RAY DIFFRACTION' 4.575 38.36 . . 30 733 99.3490 . . . . 0.270 . . . . . . . . . . . 0.245 # _struct.entry_id 8PFX _struct.title 'X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PFX _struct_keywords.text 'Ruthenium, Protein interaction, Metallodrug, Diruthenium, Hydrolase, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 AA2 ASN A 19 ? TYR A 23 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 AA3 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 AA4 PRO A 79 ? SER A 85 ? PRO A 79 SER A 85 5 ? 7 HELX_P HELX_P5 AA5 ILE A 88 ? SER A 100 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P6 AA6 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 AA7 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 AA8 ASP A 119 ? ARG A 125 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc1 metalc ? ? A SER 60 O ? ? ? 1_555 B NA . NA ? ? A SER 60 A NA 201 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc2 metalc ? ? A CYS 64 O ? ? ? 1_555 B NA . NA ? ? A CYS 64 A NA 201 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc3 metalc ? ? A SER 72 OG ? ? ? 1_555 B NA . NA ? ? A SER 72 A NA 201 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc4 metalc ? ? A ARG 73 O ? ? ? 1_555 B NA . NA ? ? A ARG 73 A NA 201 1_555 ? ? ? ? ? ? ? 2.372 ? ? metalc5 metalc ? ? A ASP 101 OD1 ? ? ? 1_555 F YJT . RU2 ? ? A ASP 101 A YJT 205 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc6 metalc ? ? A ASP 101 OD2 ? ? ? 1_555 F YJT . RU1 ? ? A ASP 101 A YJT 205 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc7 metalc ? ? A ARG 125 NH1 ? ? ? 1_555 G YJT . RU1 ? ? A ARG 125 A YJT 206 4_444 ? ? ? ? ? ? ? 2.615 ? ? metalc8 metalc ? ? B NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 201 A HOH 389 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc9 metalc ? ? B NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 201 A HOH 406 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc10 metalc ? ? F YJT . RU2 ? ? ? 1_555 I HOH . O ? ? A YJT 205 A HOH 359 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc11 metalc ? ? F YJT . RU1 ? ? ? 1_555 I HOH . O ? ? A YJT 205 A HOH 378 1_555 ? ? ? ? ? ? ? 2.206 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 AA1 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 AA1 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 AA1 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # _atom_sites.entry_id 8PFX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013034 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013034 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026048 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 F 9 9 3.5395 10.2825 2.6414 4.2944 1.5171 0.2615 1.0244 26.1476 0.3057 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 NA 11 11 4.7659 3.2850 3.1758 8.8422 1.2683 0.3136 1.1136 129.4240 0.7359 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 RU 44 44 19.2695 0.8085 12.9196 8.4347 4.8639 24.7997 1.5677 94.2928 4.6906 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0555 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n # _pdbx_contact_author.id 4 _pdbx_contact_author.email aaronter@ucm.es _pdbx_contact_author.name_first Aaron _pdbx_contact_author.name_last Teran _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6126-6230 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 131 NA NA A . C 3 EPE 1 202 132 EPE EPE A . D 4 FMT 1 203 133 FMT FMT A . E 4 FMT 1 204 135 FMT FMT A . F 5 YJT 1 205 1 YJT TM9 A . G 5 YJT 1 206 1 YJT TM9 A . H 5 YJT 1 207 1 YJT TM9 A . I 6 HOH 1 301 94 HOH HOH A . I 6 HOH 2 302 160 HOH HOH A . I 6 HOH 3 303 28 HOH HOH A . I 6 HOH 4 304 45 HOH HOH A . I 6 HOH 5 305 71 HOH HOH A . I 6 HOH 6 306 128 HOH HOH A . I 6 HOH 7 307 133 HOH HOH A . I 6 HOH 8 308 116 HOH HOH A . I 6 HOH 9 309 77 HOH HOH A . I 6 HOH 10 310 109 HOH HOH A . I 6 HOH 11 311 122 HOH HOH A . I 6 HOH 12 312 15 HOH HOH A . I 6 HOH 13 313 104 HOH HOH A . I 6 HOH 14 314 124 HOH HOH A . I 6 HOH 15 315 93 HOH HOH A . I 6 HOH 16 316 42 HOH HOH A . I 6 HOH 17 317 61 HOH HOH A . I 6 HOH 18 318 22 HOH HOH A . I 6 HOH 19 319 16 HOH HOH A . I 6 HOH 20 320 34 HOH HOH A . I 6 HOH 21 321 17 HOH HOH A . I 6 HOH 22 322 3 HOH HOH A . I 6 HOH 23 323 37 HOH HOH A . I 6 HOH 24 324 149 HOH HOH A . I 6 HOH 25 325 19 HOH HOH A . I 6 HOH 26 326 48 HOH HOH A . I 6 HOH 27 327 101 HOH HOH A . I 6 HOH 28 328 50 HOH HOH A . I 6 HOH 29 329 65 HOH HOH A . I 6 HOH 30 330 1 HOH HOH A . I 6 HOH 31 331 84 HOH HOH A . I 6 HOH 32 332 120 HOH HOH A . I 6 HOH 33 333 43 HOH HOH A . I 6 HOH 34 334 103 HOH HOH A . I 6 HOH 35 335 32 HOH HOH A . I 6 HOH 36 336 73 HOH HOH A . I 6 HOH 37 337 46 HOH HOH A . I 6 HOH 38 338 5 HOH HOH A . I 6 HOH 39 339 54 HOH HOH A . I 6 HOH 40 340 14 HOH HOH A . I 6 HOH 41 341 31 HOH HOH A . I 6 HOH 42 342 41 HOH HOH A . I 6 HOH 43 343 10 HOH HOH A . I 6 HOH 44 344 107 HOH HOH A . I 6 HOH 45 345 24 HOH HOH A . I 6 HOH 46 346 29 HOH HOH A . I 6 HOH 47 347 98 HOH HOH A . I 6 HOH 48 348 138 HOH HOH A . I 6 HOH 49 349 145 HOH HOH A . I 6 HOH 50 350 62 HOH HOH A . I 6 HOH 51 351 158 HOH HOH A . I 6 HOH 52 352 115 HOH HOH A . I 6 HOH 53 353 140 HOH HOH A . I 6 HOH 54 354 75 HOH HOH A . I 6 HOH 55 355 36 HOH HOH A . I 6 HOH 56 356 74 HOH HOH A . I 6 HOH 57 357 40 HOH HOH A . I 6 HOH 58 358 25 HOH HOH A . I 6 HOH 59 359 82 HOH HOH A . I 6 HOH 60 360 99 HOH HOH A . I 6 HOH 61 361 26 HOH HOH A . I 6 HOH 62 362 39 HOH HOH A . I 6 HOH 63 363 7 HOH HOH A . I 6 HOH 64 364 67 HOH HOH A . I 6 HOH 65 365 2 HOH HOH A . I 6 HOH 66 366 119 HOH HOH A . I 6 HOH 67 367 21 HOH HOH A . I 6 HOH 68 368 8 HOH HOH A . I 6 HOH 69 369 33 HOH HOH A . I 6 HOH 70 370 78 HOH HOH A . I 6 HOH 71 371 30 HOH HOH A . I 6 HOH 72 372 86 HOH HOH A . I 6 HOH 73 373 12 HOH HOH A . I 6 HOH 74 374 129 HOH HOH A . I 6 HOH 75 375 80 HOH HOH A . I 6 HOH 76 376 23 HOH HOH A . I 6 HOH 77 377 152 HOH HOH A . I 6 HOH 78 378 83 HOH HOH A . I 6 HOH 79 379 70 HOH HOH A . I 6 HOH 80 380 118 HOH HOH A . I 6 HOH 81 381 6 HOH HOH A . I 6 HOH 82 382 49 HOH HOH A . I 6 HOH 83 383 141 HOH HOH A . I 6 HOH 84 384 153 HOH HOH A . I 6 HOH 85 385 72 HOH HOH A . I 6 HOH 86 386 137 HOH HOH A . I 6 HOH 87 387 58 HOH HOH A . I 6 HOH 88 388 53 HOH HOH A . I 6 HOH 89 389 20 HOH HOH A . I 6 HOH 90 390 59 HOH HOH A . I 6 HOH 91 391 18 HOH HOH A . I 6 HOH 92 392 56 HOH HOH A . I 6 HOH 93 393 4 HOH HOH A . I 6 HOH 94 394 47 HOH HOH A . I 6 HOH 95 395 131 HOH HOH A . I 6 HOH 96 396 161 HOH HOH A . I 6 HOH 97 397 64 HOH HOH A . I 6 HOH 98 398 162 HOH HOH A . I 6 HOH 99 399 60 HOH HOH A . I 6 HOH 100 400 143 HOH HOH A . I 6 HOH 101 401 117 HOH HOH A . I 6 HOH 102 402 87 HOH HOH A . I 6 HOH 103 403 110 HOH HOH A . I 6 HOH 104 404 106 HOH HOH A . I 6 HOH 105 405 112 HOH HOH A . I 6 HOH 106 406 13 HOH HOH A . I 6 HOH 107 407 108 HOH HOH A . I 6 HOH 108 408 123 HOH HOH A . I 6 HOH 109 409 85 HOH HOH A . I 6 HOH 110 410 121 HOH HOH A . I 6 HOH 111 411 68 HOH HOH A . I 6 HOH 112 412 105 HOH HOH A . I 6 HOH 113 413 136 HOH HOH A . I 6 HOH 114 414 146 HOH HOH A . I 6 HOH 115 415 111 HOH HOH A . I 6 HOH 116 416 139 HOH HOH A . I 6 HOH 117 417 156 HOH HOH A . I 6 HOH 118 418 114 HOH HOH A . I 6 HOH 119 419 154 HOH HOH A . I 6 HOH 120 420 148 HOH HOH A . I 6 HOH 121 421 35 HOH HOH A . I 6 HOH 122 422 79 HOH HOH A . I 6 HOH 123 423 151 HOH HOH A . I 6 HOH 124 424 57 HOH HOH A . I 6 HOH 125 425 135 HOH HOH A . I 6 HOH 126 426 125 HOH HOH A . I 6 HOH 127 427 159 HOH HOH A . I 6 HOH 128 428 134 HOH HOH A . I 6 HOH 129 429 142 HOH HOH A . I 6 HOH 130 430 97 HOH HOH A . I 6 HOH 131 431 127 HOH HOH A . I 6 HOH 132 432 66 HOH HOH A . I 6 HOH 133 433 157 HOH HOH A . I 6 HOH 134 434 130 HOH HOH A . I 6 HOH 135 435 113 HOH HOH A . I 6 HOH 136 436 126 HOH HOH A . I 6 HOH 137 437 144 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 870 ? 1 MORE -7 ? 1 'SSA (A^2)' 6770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 305 ? I HOH . 2 1 A HOH 343 ? I HOH . 3 1 A HOH 372 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? A CYS 64 ? A CYS 64 ? 1_555 87.9 ? 2 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 88.7 ? 3 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 OG ? A SER 72 ? A SER 72 ? 1_555 167.0 ? 4 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? A ARG 73 ? A ARG 73 ? 1_555 94.7 ? 5 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? A ARG 73 ? A ARG 73 ? 1_555 93.8 ? 6 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? A ARG 73 ? A ARG 73 ? 1_555 99.0 ? 7 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 389 ? 1_555 96.7 ? 8 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 389 ? 1_555 87.6 ? 9 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 389 ? 1_555 80.3 ? 10 O ? A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 389 ? 1_555 168.5 ? 11 O ? A SER 60 ? A SER 60 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 406 ? 1_555 172.6 ? 12 O ? A CYS 64 ? A CYS 64 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 406 ? 1_555 98.1 ? 13 OG ? A SER 72 ? A SER 72 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 406 ? 1_555 84.5 ? 14 O ? A ARG 73 ? A ARG 73 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 406 ? 1_555 89.3 ? 15 O ? I HOH . ? A HOH 389 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O ? I HOH . ? A HOH 406 ? 1_555 79.2 ? 16 OD1 ? A ASP 101 ? A ASP 101 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 90.3 ? 17 OD1 ? A ASP 101 ? A ASP 101 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O4 ? F YJT . ? A YJT 205 ? 1_555 90.9 ? 18 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O4 ? F YJT . ? A YJT 205 ? 1_555 90.9 ? 19 OD1 ? A ASP 101 ? A ASP 101 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O2 ? F YJT . ? A YJT 205 ? 1_555 87.9 ? 20 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O2 ? F YJT . ? A YJT 205 ? 1_555 95.5 ? 21 O4 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O2 ? F YJT . ? A YJT 205 ? 1_555 173.5 ? 22 OD1 ? A ASP 101 ? A ASP 101 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 N2 ? F YJT . ? A YJT 205 ? 1_555 179.0 ? 23 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 N2 ? F YJT . ? A YJT 205 ? 1_555 90.0 ? 24 O4 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 N2 ? F YJT . ? A YJT 205 ? 1_555 90.1 ? 25 O2 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 N2 ? F YJT . ? A YJT 205 ? 1_555 91.1 ? 26 OD1 ? A ASP 101 ? A ASP 101 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 359 ? 1_555 79.9 ? 27 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 359 ? 1_555 170.1 ? 28 O4 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 359 ? 1_555 90.6 ? 29 O2 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 359 ? 1_555 82.9 ? 30 N2 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 359 ? 1_555 99.7 ? 31 OD2 ? A ASP 101 ? A ASP 101 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O3 ? F YJT . ? A YJT 205 ? 1_555 91.9 ? 32 OD2 ? A ASP 101 ? A ASP 101 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O1 ? F YJT . ? A YJT 205 ? 1_555 87.5 ? 33 O3 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O1 ? F YJT . ? A YJT 205 ? 1_555 174.4 ? 34 OD2 ? A ASP 101 ? A ASP 101 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 N1 ? F YJT . ? A YJT 205 ? 1_555 176.8 ? 35 O3 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 N1 ? F YJT . ? A YJT 205 ? 1_555 89.6 ? 36 O1 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 N1 ? F YJT . ? A YJT 205 ? 1_555 90.7 ? 37 OD2 ? A ASP 101 ? A ASP 101 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 87.0 ? 38 O3 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 90.0 ? 39 O1 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 84.4 ? 40 N1 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 RU2 ? F YJT . ? A YJT 205 ? 1_555 90.2 ? 41 OD2 ? A ASP 101 ? A ASP 101 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 378 ? 1_555 84.1 ? 42 O3 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 378 ? 1_555 90.1 ? 43 O1 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 378 ? 1_555 95.4 ? 44 N1 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 378 ? 1_555 98.7 ? 45 RU2 ? F YJT . ? A YJT 205 ? 1_555 RU1 ? F YJT . ? A YJT 205 ? 1_555 O ? I HOH . ? A HOH 378 ? 1_555 171.1 ? 46 NH1 ? A ARG 125 ? A ARG 125 ? 1_555 RU1 ? G YJT . ? A YJT 206 ? 4_444 RU2 ? G YJT . ? A YJT 206 ? 4_444 127.2 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0403 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8PFX _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 LEU _pdbx_validate_symm_contact.auth_seq_id_1 129 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 LEU _pdbx_validate_symm_contact.auth_seq_id_2 129 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_554 _pdbx_validate_symm_contact.dist 1.83 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 45 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 45 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 NE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 45 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 125.98 _pdbx_validate_rmsd_angle.angle_target_value 111.80 _pdbx_validate_rmsd_angle.angle_deviation 14.18 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 45 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id A _pdbx_validate_planes.rmsd 0.210 _pdbx_validate_planes.type SIDE_CHAIN # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A YJT 206 ? O4 ? G YJT 1 O4 2 1 N 1 A YJT 207 ? C2 ? H YJT 1 C2 3 1 N 1 A YJT 207 ? C4 ? H YJT 1 C4 4 1 N 1 A YJT 207 ? O4 ? H YJT 1 O4 5 1 N 1 A YJT 207 ? C5 ? H YJT 1 C5 6 1 N 1 A YJT 207 ? C6 ? H YJT 1 C6 7 1 N 1 A YJT 207 ? N2 ? H YJT 1 N2 8 1 N 1 A YJT 207 ? C3 ? H YJT 1 C3 9 1 N 1 A YJT 207 ? O3 ? H YJT 1 O3 10 1 N 1 A YJT 207 ? C1 ? H YJT 1 C1 11 1 N 1 A YJT 207 ? O1 ? H YJT 1 O1 12 1 N 1 A YJT 207 ? F1 ? H YJT 1 F1 13 1 N 1 A YJT 207 ? F2 ? H YJT 1 F2 14 1 N 1 A YJT 207 ? O2 ? H YJT 1 O2 15 1 N 1 A YJT 207 ? N1 ? H YJT 1 N1 16 1 N 1 A YJT 207 ? C7 ? H YJT 1 C7 17 1 N 1 A YJT 207 ? C14 ? H YJT 1 C14 18 1 N 1 A YJT 207 ? C11 ? H YJT 1 C11 19 1 N 1 A YJT 207 ? C8 ? H YJT 1 C8 20 1 N 1 A YJT 207 ? C10 ? H YJT 1 C10 21 1 N 1 A YJT 207 ? C9 ? H YJT 1 C9 22 1 N 1 A YJT 207 ? C12 ? H YJT 1 C12 23 1 N 1 A YJT 207 ? C13 ? H YJT 1 C13 24 1 N 1 A YJT 207 ? O7 ? H YJT 1 O7 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id YJT _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id YJT _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 4 'FORMIC ACID' FMT 5 '6,8-bis(4-fluorophenyl)-1,5-bis(oxidanyl)-2,4-dioxa-6,8-diaza-1$l^{4},5$l^{4}-diruthenabicyclo[3.3.0]octan-3-one' YJT 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 193L _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #