HEADER ANTIMICROBIAL PROTEIN 18-JUN-23 8PG7 TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM1 WITH 2755 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B CARBAPENEMASE VIM-1,METALLO-BETA-LACTAMASE,METALLO- COMPND 5 BETA-LACTAMASE VIM-1,METALLOBETA-LACTAMASE,SUBCLASS B1 METALLO-BETA- COMPND 6 LACTAMASE VIM-1,VIM-1,VIM-1 METALLO-BETA-LACTAMASE,VIM-1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM, BLAVIM-1, CAZ10_38240, CAZ10_38245; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS COMPLEX, METALLO-BETA-LACTAMASE, INHIBITOR, ZINC, INDOLE CARBOXYLATE, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.CALVOPINA,J.BREM,A.J.M.FARLEY,M.D.ALLEN,C.J.SCHOFIELD REVDAT 1 10-JUL-24 8PG7 0 JRNL AUTH K.CALVOPINA,J.BREM,A.J.M.FARLEY,M.D.ALLEN,C.J.SCHOFIELD JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM1 WITH JRNL TITL 2 2755 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.830 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 63344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 6281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4800 - 3.7300 0.96 3979 187 0.1627 0.1373 REMARK 3 2 3.7300 - 2.9600 0.97 3994 193 0.1357 0.1438 REMARK 3 3 2.9600 - 2.5900 0.97 3874 281 0.1375 0.1362 REMARK 3 4 2.5800 - 2.3500 0.97 3923 246 0.1228 0.1410 REMARK 3 5 2.3500 - 2.1800 0.97 3983 179 0.1126 0.1288 REMARK 3 6 2.1800 - 2.0500 0.98 4016 230 0.1093 0.1279 REMARK 3 7 2.0500 - 1.9500 0.98 4051 185 0.1055 0.1424 REMARK 3 8 1.9500 - 1.8600 0.98 4041 164 0.1044 0.1084 REMARK 3 9 1.8600 - 1.7900 0.98 4015 196 0.1063 0.1186 REMARK 3 10 1.7900 - 1.7300 0.98 4068 207 0.1045 0.1115 REMARK 3 11 1.7300 - 1.6800 0.99 4051 178 0.1017 0.1486 REMARK 3 12 1.6800 - 1.6300 0.99 4089 184 0.1016 0.1347 REMARK 3 13 1.6300 - 1.5900 0.98 3985 253 0.0968 0.1291 REMARK 3 14 1.5900 - 1.5500 0.98 4086 157 0.0959 0.1233 REMARK 3 15 1.5500 - 1.5100 0.98 4006 211 0.0978 0.1205 REMARK 3 16 1.5100 - 1.4800 0.98 3989 244 0.0992 0.1468 REMARK 3 17 1.4800 - 1.4500 0.98 4016 241 0.1101 0.1469 REMARK 3 18 1.4500 - 1.4200 0.99 4029 238 0.1143 0.1376 REMARK 3 19 1.4200 - 1.4000 0.98 4020 221 0.1198 0.1664 REMARK 3 20 1.4000 - 1.3700 0.98 4102 170 0.1188 0.1803 REMARK 3 21 1.3700 - 1.3500 0.98 3979 232 0.1260 0.1528 REMARK 3 22 1.3500 - 1.3300 0.99 3968 257 0.1220 0.1685 REMARK 3 23 1.3300 - 1.3100 0.98 4032 223 0.1352 0.1480 REMARK 3 24 1.3100 - 1.2900 0.99 4047 189 0.1315 0.1937 REMARK 3 25 1.2900 - 1.2800 0.98 4154 154 0.1403 0.1517 REMARK 3 26 1.2800 - 1.2600 0.98 3978 227 0.1462 0.1973 REMARK 3 27 1.2600 - 1.2400 0.98 4023 215 0.1503 0.2119 REMARK 3 28 1.2400 - 1.2300 0.98 4026 220 0.1581 0.1835 REMARK 3 29 1.2300 - 1.2100 0.98 3998 209 0.1735 0.2012 REMARK 3 30 1.2100 - 1.2000 0.93 3880 190 0.2000 0.2278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.089 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.051 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2070 REMARK 3 ANGLE : 1.581 2866 REMARK 3 CHIRALITY : 0.123 312 REMARK 3 PLANARITY : 0.019 382 REMARK 3 DIHEDRAL : 20.575 348 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM PHOSPHATE 0.1M TRISHCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.93450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 TYR A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 41 CB VAL A 41 CG1 -0.253 REMARK 500 GLU A 79 CD GLU A 79 OE1 0.069 REMARK 500 VAL A 185 CB VAL A 185 CG2 -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 100 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 247 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 145.39 74.23 REMARK 500 TRP A 87 70.98 68.12 REMARK 500 ALA A 178 -107.01 -151.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 45 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 718 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 719 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 720 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 721 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 722 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 723 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 724 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 726 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 727 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 6.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 97.8 REMARK 620 3 HIS A 179 NE2 102.2 109.3 REMARK 620 4 HOH A 482 O 111.1 124.3 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 98.5 REMARK 620 3 HIS A 240 NE2 80.8 102.6 REMARK 620 4 YV3 A 303 O08 159.2 102.1 91.6 REMARK 620 5 HOH A 482 O 82.1 117.2 138.5 91.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AFY RELATED DB: PDB DBREF 8PG7 A 1 266 UNP Q9XAY4 Q9XAY4_PSEAI 1 266 SEQRES 1 A 266 MET LEU LYS VAL ILE SER SER LEU LEU VAL TYR MET THR SEQRES 2 A 266 ALA SER VAL MET ALA VAL ALA SER PRO LEU ALA HIS SER SEQRES 3 A 266 GLY GLU PRO SER GLY GLU TYR PRO THR VAL ASN GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU ALA GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA ASN VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA VAL HIS GLU LEU SER SER THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER VAL GLU ARG ILE GLN LYS HIS TYR PRO GLU ALA GLU SEQRES 19 A 266 VAL VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU GLN HIS THR ALA ASN VAL VAL LYS ALA HIS LYS SEQRES 21 A 266 ASN ARG SER VAL ALA GLU HET ZN A 301 1 HET ZN A 302 1 HET YV3 A 303 132 HETNAM ZN ZINC ION HETNAM YV3 7-[(1~{S})-1-[3-(4-AZANYLBUTYL)-2,5-BIS(OXIDANYLIDENE) HETNAM 2 YV3 IMIDAZOLIDIN-1-YL]ETHYL]-3-[3-FLUORANYL-4- HETNAM 3 YV3 (METHYLSULFONYLMETHYL)PHENYL]-1~{H}-INDOLE-2- HETNAM 4 YV3 CARBOXYLIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 YV3 C26 H29 F N4 O6 S FORMUL 5 HOH *328(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 VAL A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 LINK NE2 HIS A 114 ZN A ZN A 301 1555 1555 2.08 LINK ND1 HIS A 116 ZN A ZN A 301 1555 1555 2.02 LINK OD2 ASP A 118 ZN A ZN A 302 1555 1555 2.35 LINK NE2 HIS A 179 ZN A ZN A 301 1555 1555 2.00 LINK SG CYS A 198 ZN A ZN A 302 1555 1555 2.29 LINK NE2 HIS A 240 ZN A ZN A 302 1555 1555 2.11 LINK ZN A ZN A 301 O HOH A 482 1555 1555 1.90 LINK ZN A ZN A 302 O08AYV3 A 303 1555 1555 2.26 LINK ZN A ZN A 302 O HOH A 482 1555 1555 2.01 CRYST1 39.302 67.869 40.101 90.00 93.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025444 0.000000 0.001570 0.00000 SCALE2 0.000000 0.014734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024984 0.00000 CONECT 1512 3811 CONECT 1546 3811 CONECT 1576 3812 CONECT 2558 3811 CONECT 2843 3812 CONECT 3471 3812 CONECT 3811 1512 1546 2558 4026 CONECT 3812 1576 2843 3471 3875 CONECT 3812 4026 CONECT 3813 3815 3821 3865 CONECT 3814 3816 3822 3866 CONECT 3815 3813 3817 3889 CONECT 3816 3814 3818 3890 CONECT 3817 3815 3823 3841 CONECT 3818 3816 3824 3842 CONECT 3819 3821 3887 3891 3893 CONECT 3820 3822 3888 3892 3894 CONECT 3821 3813 3819 3839 CONECT 3822 3814 3820 3840 CONECT 3823 3817 3833 3843 CONECT 3824 3818 3834 3844 CONECT 3825 3827 3895 3897 3899 CONECT 3826 3828 3896 3898 3900 CONECT 3827 3825 3829 3869 3901 CONECT 3828 3826 3830 3870 3902 CONECT 3829 3827 3831 3849 CONECT 3830 3828 3832 3850 CONECT 3831 3829 3843 3867 CONECT 3832 3830 3844 3868 CONECT 3833 3823 3835 3867 CONECT 3834 3824 3836 3868 CONECT 3835 3833 3875 3877 CONECT 3836 3834 3876 3878 CONECT 3837 3887 3903 3905 3907 CONECT 3838 3888 3904 3906 3908 CONECT 3839 3821 3841 3909 CONECT 3840 3822 3842 3910 CONECT 3841 3817 3839 3911 CONECT 3842 3818 3840 3912 CONECT 3843 3823 3831 3845 CONECT 3844 3824 3832 3846 CONECT 3845 3843 3847 3913 CONECT 3846 3844 3848 3914 CONECT 3847 3845 3849 3915 CONECT 3848 3846 3850 3916 CONECT 3849 3829 3847 3917 CONECT 3850 3830 3848 3918 CONECT 3851 3853 3869 3883 CONECT 3852 3854 3870 3884 CONECT 3853 3851 3871 3919 3921 CONECT 3854 3852 3872 3920 3922 CONECT 3855 3857 3871 3923 3925 CONECT 3856 3858 3872 3924 3926 CONECT 3857 3855 3859 3927 3929 CONECT 3858 3856 3860 3928 3930 CONECT 3859 3857 3861 3931 3933 CONECT 3860 3858 3862 3932 3934 CONECT 3861 3859 3873 3935 3937 CONECT 3862 3860 3874 3936 3938 CONECT 3863 3869 3871 3885 CONECT 3864 3870 3872 3886 CONECT 3865 3813 CONECT 3866 3814 CONECT 3867 3831 3833 3939 CONECT 3868 3832 3834 3940 CONECT 3869 3827 3851 3863 CONECT 3870 3828 3852 3864 CONECT 3871 3853 3855 3863 CONECT 3872 3854 3856 3864 CONECT 3873 3861 3941 CONECT 3874 3862 3942 CONECT 3875 3812 3835 CONECT 3876 3836 CONECT 3877 3835 CONECT 3878 3836 CONECT 3879 3887 CONECT 3880 3888 CONECT 3881 3887 CONECT 3882 3888 CONECT 3883 3851 CONECT 3884 3852 CONECT 3885 3863 CONECT 3886 3864 CONECT 3887 3819 3837 3879 3881 CONECT 3888 3820 3838 3880 3882 CONECT 3889 3815 CONECT 3890 3816 CONECT 3891 3819 CONECT 3892 3820 CONECT 3893 3819 CONECT 3894 3820 CONECT 3895 3825 CONECT 3896 3826 CONECT 3897 3825 CONECT 3898 3826 CONECT 3899 3825 CONECT 3900 3826 CONECT 3901 3827 CONECT 3902 3828 CONECT 3903 3837 CONECT 3904 3838 CONECT 3905 3837 CONECT 3906 3838 CONECT 3907 3837 CONECT 3908 3838 CONECT 3909 3839 CONECT 3910 3840 CONECT 3911 3841 CONECT 3912 3842 CONECT 3913 3845 CONECT 3914 3846 CONECT 3915 3847 CONECT 3916 3848 CONECT 3917 3849 CONECT 3918 3850 CONECT 3919 3853 CONECT 3920 3854 CONECT 3921 3853 CONECT 3922 3854 CONECT 3923 3855 CONECT 3924 3856 CONECT 3925 3855 CONECT 3926 3856 CONECT 3927 3857 CONECT 3928 3858 CONECT 3929 3857 CONECT 3930 3858 CONECT 3931 3859 CONECT 3932 3860 CONECT 3933 3859 CONECT 3934 3860 CONECT 3935 3861 CONECT 3936 3862 CONECT 3937 3861 CONECT 3938 3862 CONECT 3939 3867 CONECT 3940 3868 CONECT 3941 3873 CONECT 3942 3874 CONECT 4026 3811 3812 MASTER 379 0 3 8 12 0 0 6 2099 1 140 21 END