HEADER DNA BINDING PROTEIN 21-JUN-23 8PI8 TITLE DNA BINDING DOMAIN OF HNF-1A BOUND TO P2-HNF4A PROMOTER DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: E; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHAINS: F; COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA; COMPND 11 CHAIN: A, B; COMPND 12 SYNONYM: HNF-1-ALPHA,HNF-1A,LIVER-SPECIFIC TRANSCRIPTION FACTOR LF- COMPND 13 B1,LFB1,TRANSCRIPTION FACTOR 1,TCF-1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: NM_175914.5; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 OTHER_DETAILS: NM_175914.5; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HNF1A, TCF1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING PROTEIN, GENE TRANSCRIPTION, HNF- KEYWDS 2 1A, HNF4A EXPDTA X-RAY DIFFRACTION AUTHOR L.KIND,M.MYLLYKOSKI,A.RAASAKKA,P.KURSULA REVDAT 1 19-JUN-24 8PI8 0 JRNL AUTH L.KIND,J.MOLNES,E.TJORA,A.RAASAKKA,M.MYLLYKOSKI,K.COLCLOUGH, JRNL AUTH 2 C.SAINT-MARTIN,C.ADELFALK,P.DUSATKOVA,S.PRUHOVA, JRNL AUTH 3 C.VALTONEN-ANDRE,C.BELLANNE-CHANTELOT,T.ARNESEN,P.KURSULA, JRNL AUTH 4 P.R.NJOLSTAD JRNL TITL MOLECULAR MECHANISM OF HNF-1A-MEDIATED HNF4A GENE REGULATION JRNL TITL 2 AND PROMOTER-DRIVEN HNF4A-MODY DIABETES. JRNL REF JCI INSIGHT V. 9 2024 JRNL REFN ISSN 2379-3708 JRNL PMID 38855865 JRNL DOI 10.1172/JCI.INSIGHT.175278 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3300 - 5.7900 1.00 2655 142 0.1566 0.2005 REMARK 3 2 5.7900 - 4.6000 1.00 2620 139 0.1795 0.2433 REMARK 3 3 4.6000 - 4.0200 1.00 2650 138 0.1580 0.1974 REMARK 3 4 4.0200 - 3.6500 1.00 2663 139 0.1780 0.2437 REMARK 3 5 3.6500 - 3.3900 0.96 2552 136 0.1982 0.2444 REMARK 3 6 3.3900 - 3.1900 0.99 2620 143 0.2074 0.2163 REMARK 3 7 3.1900 - 3.0300 1.00 2645 138 0.2607 0.3520 REMARK 3 8 3.0300 - 2.9000 1.00 2607 139 0.2885 0.3439 REMARK 3 9 2.9000 - 2.7900 1.00 2678 141 0.2981 0.3541 REMARK 3 10 2.7900 - 2.6900 1.00 2673 145 0.3323 0.3611 REMARK 3 11 2.6900 - 2.6100 1.00 2643 133 0.3105 0.3541 REMARK 3 12 2.6100 - 2.5300 1.00 2669 143 0.3399 0.3901 REMARK 3 13 2.5300 - 2.4700 1.00 2588 134 0.3572 0.3862 REMARK 3 14 2.4700 - 2.4100 0.99 2657 138 0.3672 0.4141 REMARK 3 15 2.4100 - 2.3500 0.98 2586 140 0.3907 0.3942 REMARK 3 16 2.3500 - 2.3000 0.79 2116 99 0.3988 0.4114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.486 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3803 REMARK 3 ANGLE : 0.537 5308 REMARK 3 CHIRALITY : 0.034 568 REMARK 3 PLANARITY : 0.004 548 REMARK 3 DIHEDRAL : 23.436 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5588 -12.4033 -18.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.6043 T22: 0.6289 REMARK 3 T33: 0.5868 T12: -0.0722 REMARK 3 T13: 0.0142 T23: 0.0691 REMARK 3 L TENSOR REMARK 3 L11: 1.7694 L22: 0.2462 REMARK 3 L33: 4.1466 L12: -0.5880 REMARK 3 L13: 0.5759 L23: 0.1579 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.2485 S13: 0.2375 REMARK 3 S21: 0.1500 S22: -0.0125 S23: 0.0509 REMARK 3 S31: 0.3595 S32: -0.6448 S33: 0.0299 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6850 -13.9020 -21.3732 REMARK 3 T TENSOR REMARK 3 T11: 0.4664 T22: 0.3947 REMARK 3 T33: 0.5293 T12: -0.0930 REMARK 3 T13: -0.0061 T23: 0.0792 REMARK 3 L TENSOR REMARK 3 L11: 3.1760 L22: 1.7715 REMARK 3 L33: 2.8242 L12: -0.5342 REMARK 3 L13: 0.7391 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.2392 S12: 0.0644 S13: 0.0077 REMARK 3 S21: 0.1938 S22: 0.1889 S23: 0.2331 REMARK 3 S31: 0.0837 S32: -0.1307 S33: 0.0751 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6139 4.1173 4.9424 REMARK 3 T TENSOR REMARK 3 T11: 0.7719 T22: 0.9423 REMARK 3 T33: 0.6010 T12: 0.0086 REMARK 3 T13: -0.0977 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.3827 L22: 2.1945 REMARK 3 L33: 2.9084 L12: -0.8809 REMARK 3 L13: 1.2281 L23: 0.6398 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -1.2936 S13: 0.1090 REMARK 3 S21: 0.9525 S22: -0.3004 S23: -0.3415 REMARK 3 S31: 0.2058 S32: 1.1546 S33: 0.0900 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0401 3.1349 -9.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.4102 T22: 0.5038 REMARK 3 T33: 0.5009 T12: 0.0438 REMARK 3 T13: -0.0080 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.6380 L22: 2.9939 REMARK 3 L33: 2.1603 L12: 0.7392 REMARK 3 L13: 0.8594 L23: -0.6369 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: -0.2674 S13: -0.1035 REMARK 3 S21: 0.2061 S22: 0.2301 S23: 0.1205 REMARK 3 S31: -0.1595 S32: -0.1420 S33: -0.0906 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4291 5.7673 -5.7662 REMARK 3 T TENSOR REMARK 3 T11: 0.5003 T22: 0.5932 REMARK 3 T33: 0.4966 T12: 0.0218 REMARK 3 T13: -0.0542 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.5433 L22: 5.7084 REMARK 3 L33: 1.7471 L12: 1.1062 REMARK 3 L13: -0.2211 L23: -0.8769 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: -0.0340 S13: -0.1081 REMARK 3 S21: 0.3879 S22: 0.1249 S23: -0.6060 REMARK 3 S31: -0.0832 S32: 0.2249 S33: -0.0338 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6503 22.2895 -25.9679 REMARK 3 T TENSOR REMARK 3 T11: 0.6292 T22: 0.6148 REMARK 3 T33: 0.5638 T12: -0.1192 REMARK 3 T13: -0.0016 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.9797 L22: 2.5901 REMARK 3 L33: 2.4026 L12: 1.6190 REMARK 3 L13: 0.3623 L23: -0.6905 REMARK 3 S TENSOR REMARK 3 S11: -0.1563 S12: 0.5043 S13: 0.4331 REMARK 3 S21: -0.0066 S22: 0.0508 S23: 0.3708 REMARK 3 S31: -0.1865 S32: -0.2116 S33: -0.0103 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6841 27.9369 -23.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.7281 T22: 0.5754 REMARK 3 T33: 0.7242 T12: -0.0613 REMARK 3 T13: -0.0084 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.2314 L22: 1.7054 REMARK 3 L33: 6.7161 L12: 0.0115 REMARK 3 L13: -0.3067 L23: -1.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: 0.1594 S13: 0.4079 REMARK 3 S21: 0.2093 S22: 0.1367 S23: -0.0544 REMARK 3 S31: -0.4273 S32: 0.1295 S33: 0.0342 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 244 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8500 21.2269 -16.8126 REMARK 3 T TENSOR REMARK 3 T11: 0.5628 T22: 0.5285 REMARK 3 T33: 0.4906 T12: -0.1149 REMARK 3 T13: 0.0034 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.4476 L22: 1.4296 REMARK 3 L33: 3.7363 L12: -0.0143 REMARK 3 L13: 0.1535 L23: 1.8702 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: 0.1357 S13: -0.0767 REMARK 3 S21: -0.3837 S22: 0.0576 S23: -0.2710 REMARK 3 S31: 0.0051 S32: 0.4027 S33: 0.0796 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5122 20.2912 -33.7570 REMARK 3 T TENSOR REMARK 3 T11: 0.6859 T22: 0.5693 REMARK 3 T33: 0.6739 T12: -0.1425 REMARK 3 T13: 0.0310 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 0.6106 L22: 2.6507 REMARK 3 L33: 3.2948 L12: 0.6397 REMARK 3 L13: 1.1719 L23: -0.2304 REMARK 3 S TENSOR REMARK 3 S11: 0.2792 S12: 0.2498 S13: 0.4849 REMARK 3 S21: -0.4157 S22: -0.1828 S23: 0.5181 REMARK 3 S31: 0.3906 S32: -0.1298 S33: 0.0264 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 301 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8090 -14.9123 -4.8046 REMARK 3 T TENSOR REMARK 3 T11: 0.9375 T22: 0.7666 REMARK 3 T33: 0.7070 T12: -0.1043 REMARK 3 T13: 0.1680 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 6.0674 L22: 3.0586 REMARK 3 L33: 3.9429 L12: -0.0843 REMARK 3 L13: -3.5461 L23: -2.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.3587 S12: 0.4436 S13: 1.3722 REMARK 3 S21: -0.2208 S22: 0.4324 S23: 0.5991 REMARK 3 S31: -0.5632 S32: -1.0493 S33: -0.7302 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 306 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3049 2.9825 -30.3023 REMARK 3 T TENSOR REMARK 3 T11: 0.5200 T22: 0.5135 REMARK 3 T33: 0.5090 T12: -0.0602 REMARK 3 T13: 0.0070 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 0.7357 L22: 1.5283 REMARK 3 L33: 1.8033 L12: 0.5557 REMARK 3 L13: -1.0020 L23: -0.2482 REMARK 3 S TENSOR REMARK 3 S11: 0.2679 S12: -0.0659 S13: 0.0752 REMARK 3 S21: -0.1976 S22: -0.2285 S23: 0.1279 REMARK 3 S31: 0.1718 S32: 0.4779 S33: -0.0151 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 321 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8793 17.8065 -53.7055 REMARK 3 T TENSOR REMARK 3 T11: 0.8753 T22: 0.6372 REMARK 3 T33: 0.9586 T12: -0.1919 REMARK 3 T13: -0.1705 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 5.1387 L22: 2.1197 REMARK 3 L33: 0.8227 L12: 1.7995 REMARK 3 L13: 0.2756 L23: -0.6839 REMARK 3 S TENSOR REMARK 3 S11: 0.7140 S12: 0.3230 S13: 0.0736 REMARK 3 S21: -0.7398 S22: 0.1977 S23: 0.4626 REMARK 3 S31: -0.2150 S32: -0.3058 S33: -0.5924 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 401 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6089 18.5980 -44.9352 REMARK 3 T TENSOR REMARK 3 T11: 0.6976 T22: 0.7174 REMARK 3 T33: 0.6828 T12: -0.0702 REMARK 3 T13: -0.0012 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 1.0581 L22: 3.2064 REMARK 3 L33: 1.3981 L12: -0.0624 REMARK 3 L13: -0.7873 L23: -1.5561 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: -0.0763 S13: 0.2347 REMARK 3 S21: 0.6395 S22: -0.1409 S23: 0.3171 REMARK 3 S31: -0.3381 S32: 0.4032 S33: -0.0465 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 406 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4990 0.7490 -26.6863 REMARK 3 T TENSOR REMARK 3 T11: 0.5668 T22: 0.4402 REMARK 3 T33: 0.5294 T12: -0.0435 REMARK 3 T13: -0.0002 T23: 0.1112 REMARK 3 L TENSOR REMARK 3 L11: 0.5722 L22: 1.0946 REMARK 3 L33: 1.0974 L12: 0.4821 REMARK 3 L13: -0.6300 L23: -0.2659 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.0718 S13: -0.3983 REMARK 3 S21: -0.1450 S22: -0.1757 S23: 0.0496 REMARK 3 S31: 0.1945 S32: 0.1990 S33: 0.0582 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 416 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2918 -19.5781 -8.4786 REMARK 3 T TENSOR REMARK 3 T11: 0.8763 T22: 0.7543 REMARK 3 T33: 0.6288 T12: -0.0717 REMARK 3 T13: -0.0113 T23: 0.1672 REMARK 3 L TENSOR REMARK 3 L11: 0.9174 L22: 2.2976 REMARK 3 L33: 4.2904 L12: 0.0800 REMARK 3 L13: -0.9392 L23: -2.7933 REMARK 3 S TENSOR REMARK 3 S11: 1.1331 S12: -0.7742 S13: -0.8493 REMARK 3 S21: 0.3872 S22: -0.0275 S23: 1.4377 REMARK 3 S31: 0.7670 S32: 0.7598 S33: -0.0682 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7707 -25.5134 -52.7259 REMARK 3 T TENSOR REMARK 3 T11: 0.7706 T22: 0.8075 REMARK 3 T33: 0.9492 T12: -0.0275 REMARK 3 T13: 0.0144 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.3449 L22: 1.6538 REMARK 3 L33: 0.4559 L12: 0.6171 REMARK 3 L13: 0.1452 L23: 0.8464 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: -0.9277 S13: -0.1508 REMARK 3 S21: -0.0814 S22: 0.4945 S23: -1.4014 REMARK 3 S31: -0.2059 S32: 0.7550 S33: -0.1167 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8311 -5.8510 -56.8287 REMARK 3 T TENSOR REMARK 3 T11: 0.7446 T22: 0.7573 REMARK 3 T33: 0.5687 T12: -0.0973 REMARK 3 T13: 0.0400 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.8473 L22: 6.2624 REMARK 3 L33: 3.1587 L12: -0.6410 REMARK 3 L13: 0.0178 L23: 1.5058 REMARK 3 S TENSOR REMARK 3 S11: -0.4459 S12: 0.8351 S13: -0.2494 REMARK 3 S21: -0.2944 S22: 0.7259 S23: 0.5459 REMARK 3 S31: 0.4251 S32: -0.2703 S33: -0.1348 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3855 -2.4433 -39.8015 REMARK 3 T TENSOR REMARK 3 T11: 0.3999 T22: 0.4651 REMARK 3 T33: 0.3396 T12: 0.0031 REMARK 3 T13: -0.0188 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.7102 L22: 1.5959 REMARK 3 L33: 1.6769 L12: 0.9471 REMARK 3 L13: -0.5238 L23: -0.3334 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -0.3349 S13: 0.0011 REMARK 3 S21: -0.2309 S22: -0.0659 S23: 0.1038 REMARK 3 S31: 0.1796 S32: -0.0905 S33: 0.0087 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8174 4.7932 -39.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.5723 T22: 0.4235 REMARK 3 T33: 0.5833 T12: -0.0681 REMARK 3 T13: 0.0524 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.5369 L22: 2.1448 REMARK 3 L33: 2.2549 L12: -0.2420 REMARK 3 L13: -0.4077 L23: 0.3416 REMARK 3 S TENSOR REMARK 3 S11: 0.2826 S12: -0.3390 S13: -0.0708 REMARK 3 S21: 0.4052 S22: -0.0381 S23: -0.4928 REMARK 3 S31: -0.7482 S32: 0.5122 S33: -0.1728 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0433 -8.9341 -46.0656 REMARK 3 T TENSOR REMARK 3 T11: 0.4985 T22: 0.5967 REMARK 3 T33: 0.4781 T12: 0.0179 REMARK 3 T13: -0.0349 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.9825 L22: 5.1725 REMARK 3 L33: 1.9192 L12: 4.1203 REMARK 3 L13: -1.5766 L23: -1.3753 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.7287 S13: -0.2575 REMARK 3 S21: -0.1491 S22: 0.3721 S23: -0.0947 REMARK 3 S31: -0.1316 S32: -0.4621 S33: -0.2123 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9640 -15.5862 -30.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.6525 T22: 0.5311 REMARK 3 T33: 0.6463 T12: 0.0459 REMARK 3 T13: -0.0466 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.9029 L22: 2.4322 REMARK 3 L33: 3.8930 L12: 1.1307 REMARK 3 L13: 0.6332 L23: 1.8950 REMARK 3 S TENSOR REMARK 3 S11: 0.1932 S12: -0.0671 S13: -0.6519 REMARK 3 S21: 0.1300 S22: 0.0270 S23: 0.0313 REMARK 3 S31: 0.1564 S32: -0.3052 S33: -0.1620 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 10, 2022 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT, PH 4.0, 25% W/V PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.35150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.03550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.51900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.03550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.35150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.51900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 PRO A 84 REMARK 465 GLN A 182 REMARK 465 GLY A 183 REMARK 465 GLY A 184 REMARK 465 LEU A 185 REMARK 465 ILE A 186 REMARK 465 GLU A 187 REMARK 465 GLU A 188 REMARK 465 PRO A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 ASP A 192 REMARK 465 GLU A 193 REMARK 465 LEU A 194 REMARK 465 PRO A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 PHE A 277 REMARK 465 ARG A 278 REMARK 465 HIS A 279 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 PRO B 84 REMARK 465 ILE B 85 REMARK 465 LEU B 86 REMARK 465 LYS B 87 REMARK 465 GLU B 88 REMARK 465 LEU B 89 REMARK 465 GLU B 90 REMARK 465 ASN B 91 REMARK 465 ALA B 180 REMARK 465 GLY B 181 REMARK 465 GLN B 182 REMARK 465 GLY B 183 REMARK 465 GLY B 184 REMARK 465 LEU B 185 REMARK 465 ILE B 186 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 PRO B 189 REMARK 465 THR B 190 REMARK 465 GLY B 191 REMARK 465 ASP B 192 REMARK 465 GLU B 193 REMARK 465 LEU B 194 REMARK 465 PRO B 195 REMARK 465 THR B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 GLY B 199 REMARK 465 ARG B 200 REMARK 465 PHE B 277 REMARK 465 ARG B 278 REMARK 465 HIS B 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 89 7.00 -66.61 REMARK 500 GLU A 90 50.18 -93.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PI8 E 301 321 PDB 8PI8 8PI8 301 321 DBREF 8PI8 F 401 421 PDB 8PI8 8PI8 401 421 DBREF 8PI8 A 83 279 UNP P20823 HNF1A_HUMAN 83 279 DBREF 8PI8 B 83 279 UNP P20823 HNF1A_HUMAN 83 279 SEQADV 8PI8 GLY A 82 UNP P20823 EXPRESSION TAG SEQADV 8PI8 GLY B 82 UNP P20823 EXPRESSION TAG SEQRES 1 E 21 DA DC DT DG DG DT DT DA DC DT DC DT DT SEQRES 2 E 21 DT DA DA DC DG DT DA DT SEQRES 1 F 21 DA DT DA DC DG DT DT DA DA DA DG DA DG SEQRES 2 F 21 DT DA DA DC DC DA DG DT SEQRES 1 A 198 GLY PRO PRO ILE LEU LYS GLU LEU GLU ASN LEU SER PRO SEQRES 2 A 198 GLU GLU ALA ALA HIS GLN LYS ALA VAL VAL GLU THR LEU SEQRES 3 A 198 LEU GLN GLU ASP PRO TRP ARG VAL ALA LYS MET VAL LYS SEQRES 4 A 198 SER TYR LEU GLN GLN HIS ASN ILE PRO GLN ARG GLU VAL SEQRES 5 A 198 VAL ASP THR THR GLY LEU ASN GLN SER HIS LEU SER GLN SEQRES 6 A 198 HIS LEU ASN LYS GLY THR PRO MET LYS THR GLN LYS ARG SEQRES 7 A 198 ALA ALA LEU TYR THR TRP TYR VAL ARG LYS GLN ARG GLU SEQRES 8 A 198 VAL ALA GLN GLN PHE THR HIS ALA GLY GLN GLY GLY LEU SEQRES 9 A 198 ILE GLU GLU PRO THR GLY ASP GLU LEU PRO THR LYS LYS SEQRES 10 A 198 GLY ARG ARG ASN ARG PHE LYS TRP GLY PRO ALA SER GLN SEQRES 11 A 198 GLN ILE LEU PHE GLN ALA TYR GLU ARG GLN LYS ASN PRO SEQRES 12 A 198 SER LYS GLU GLU ARG GLU THR LEU VAL GLU GLU CYS ASN SEQRES 13 A 198 ARG ALA GLU CYS ILE GLN ARG GLY VAL SER PRO SER GLN SEQRES 14 A 198 ALA GLN GLY LEU GLY SER ASN LEU VAL THR GLU VAL ARG SEQRES 15 A 198 VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU GLU ALA SEQRES 16 A 198 PHE ARG HIS SEQRES 1 B 198 GLY PRO PRO ILE LEU LYS GLU LEU GLU ASN LEU SER PRO SEQRES 2 B 198 GLU GLU ALA ALA HIS GLN LYS ALA VAL VAL GLU THR LEU SEQRES 3 B 198 LEU GLN GLU ASP PRO TRP ARG VAL ALA LYS MET VAL LYS SEQRES 4 B 198 SER TYR LEU GLN GLN HIS ASN ILE PRO GLN ARG GLU VAL SEQRES 5 B 198 VAL ASP THR THR GLY LEU ASN GLN SER HIS LEU SER GLN SEQRES 6 B 198 HIS LEU ASN LYS GLY THR PRO MET LYS THR GLN LYS ARG SEQRES 7 B 198 ALA ALA LEU TYR THR TRP TYR VAL ARG LYS GLN ARG GLU SEQRES 8 B 198 VAL ALA GLN GLN PHE THR HIS ALA GLY GLN GLY GLY LEU SEQRES 9 B 198 ILE GLU GLU PRO THR GLY ASP GLU LEU PRO THR LYS LYS SEQRES 10 B 198 GLY ARG ARG ASN ARG PHE LYS TRP GLY PRO ALA SER GLN SEQRES 11 B 198 GLN ILE LEU PHE GLN ALA TYR GLU ARG GLN LYS ASN PRO SEQRES 12 B 198 SER LYS GLU GLU ARG GLU THR LEU VAL GLU GLU CYS ASN SEQRES 13 B 198 ARG ALA GLU CYS ILE GLN ARG GLY VAL SER PRO SER GLN SEQRES 14 B 198 ALA GLN GLY LEU GLY SER ASN LEU VAL THR GLU VAL ARG SEQRES 15 B 198 VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU GLU ALA SEQRES 16 B 198 PHE ARG HIS HET GOL A 301 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *3(H2 O) HELIX 1 AA1 SER A 93 GLU A 110 1 18 HELIX 2 AA2 ASP A 111 HIS A 126 1 16 HELIX 3 AA3 PRO A 129 GLY A 138 1 10 HELIX 4 AA4 ASN A 140 LYS A 150 1 11 HELIX 5 AA5 LYS A 155 HIS A 179 1 25 HELIX 6 AA6 GLY A 207 GLN A 221 1 15 HELIX 7 AA7 SER A 225 ARG A 244 1 20 HELIX 8 AA8 SER A 247 LEU A 258 5 12 HELIX 9 AA9 THR A 260 ALA A 276 1 17 HELIX 10 AB1 SER B 93 GLN B 109 1 17 HELIX 11 AB2 ASP B 111 ASN B 127 1 17 HELIX 12 AB3 PRO B 129 GLY B 138 1 10 HELIX 13 AB4 ASN B 140 GLY B 151 1 12 HELIX 14 AB5 LYS B 155 HIS B 179 1 25 HELIX 15 AB6 GLY B 207 GLN B 221 1 15 HELIX 16 AB7 SER B 225 ARG B 244 1 20 HELIX 17 AB8 SER B 247 LEU B 258 5 12 HELIX 18 AB9 THR B 260 GLU B 275 1 16 CRYST1 46.703 55.038 202.071 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004949 0.00000