HEADER DNA BINDING PROTEIN 21-JUN-23 8PI9 TITLE DNA BINDING DOMAIN OF HNF-1A BOUND TO P2-HNF4A PROMOTER DNA VARIANT TITLE 2 (P2 -181G>A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAINS: E; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHAINS: F; COMPND 8 CHAIN: F; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 1-ALPHA; COMPND 13 CHAIN: A, B; COMPND 14 SYNONYM: HNF-1-ALPHA,HNF-1A,LIVER-SPECIFIC TRANSCRIPTION FACTOR LF- COMPND 15 B1,LFB1,TRANSCRIPTION FACTOR 1,TCF-1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: NM_175914.5 C.-181G>A (G.42984264); SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 OTHER_DETAILS: NM_175914.5 C.-181G>A (G.42984264); SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HNF1A, TCF1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING PROTEIN, GENE TRANSCRIPTION, HNF- KEYWDS 2 1A, HNF4A, MODY EXPDTA X-RAY DIFFRACTION AUTHOR L.KIND,M.MYLLYKOSKI,A.RAASAKKA,P.KURSULA REVDAT 1 19-JUN-24 8PI9 0 JRNL AUTH L.KIND,J.MOLNES,E.TJORA,A.RAASAKKA,M.MYLLYKOSKI,K.COLCLOUGH, JRNL AUTH 2 C.SAINT-MARTIN,C.ADELFALK,P.DUSATKOVA,S.PRUHOVA, JRNL AUTH 3 C.VALTONEN-ANDRE,C.BELLANNE-CHANTELOT,T.ARNESEN,P.KURSULA, JRNL AUTH 4 P.R.NJOLSTAD JRNL TITL MOLECULAR MECHANISM OF HNF-1A-MEDIATED HNF4A GENE REGULATION JRNL TITL 2 AND PROMOTER-DRIVEN HNF4A-MODY DIABETES. JRNL REF JCI INSIGHT V. 9 2024 JRNL REFN ISSN 2379-3708 JRNL PMID 38855865 JRNL DOI 10.1172/JCI.INSIGHT.175278 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 13481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6400 - 5.8300 0.99 2636 133 0.1712 0.2321 REMARK 3 2 5.8300 - 4.6300 1.00 2642 138 0.2263 0.2727 REMARK 3 3 4.6300 - 4.0400 1.00 2613 134 0.2222 0.2961 REMARK 3 4 4.0400 - 3.6700 0.99 2645 144 0.2627 0.3182 REMARK 3 5 3.6700 - 3.4100 0.99 2592 135 0.2724 0.3736 REMARK 3 6 3.4100 - 3.2100 0.99 2655 137 0.2740 0.3220 REMARK 3 7 3.2100 - 3.0500 1.00 2612 139 0.4043 0.3803 REMARK 3 8 3.0500 - 2.9200 0.99 2619 127 0.3983 0.4407 REMARK 3 9 2.9200 - 2.8000 0.83 2199 130 0.4397 0.4475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.522 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3815 REMARK 3 ANGLE : 0.698 5327 REMARK 3 CHIRALITY : 0.039 569 REMARK 3 PLANARITY : 0.009 553 REMARK 3 DIHEDRAL : 23.463 789 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 301 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4263 -17.7735 45.0019 REMARK 3 T TENSOR REMARK 3 T11: 1.4278 T22: 1.2689 REMARK 3 T33: 1.0906 T12: -0.0176 REMARK 3 T13: -0.0175 T23: 0.3416 REMARK 3 L TENSOR REMARK 3 L11: 3.6962 L22: 2.7103 REMARK 3 L33: 4.3825 L12: -2.7570 REMARK 3 L13: 3.7827 L23: -2.9435 REMARK 3 S TENSOR REMARK 3 S11: 0.4158 S12: 1.9730 S13: -0.1967 REMARK 3 S21: -0.7898 S22: 0.4727 S23: 0.8039 REMARK 3 S31: -1.6061 S32: 0.1199 S33: -0.4971 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 306 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9171 -0.9351 26.9038 REMARK 3 T TENSOR REMARK 3 T11: 1.0201 T22: 0.5841 REMARK 3 T33: 0.7425 T12: 0.1160 REMARK 3 T13: 0.0385 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 4.7372 L22: 5.0500 REMARK 3 L33: 5.7509 L12: 0.5616 REMARK 3 L13: -1.4026 L23: -3.1874 REMARK 3 S TENSOR REMARK 3 S11: -0.5220 S12: 0.1201 S13: 0.6222 REMARK 3 S21: 0.7763 S22: 0.1768 S23: 0.3412 REMARK 3 S31: -1.6005 S32: 0.5352 S33: 0.2776 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 316 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9147 18.6380 8.6144 REMARK 3 T TENSOR REMARK 3 T11: 1.8545 T22: 1.4365 REMARK 3 T33: 1.1177 T12: 0.1343 REMARK 3 T13: 0.0746 T23: 0.3287 REMARK 3 L TENSOR REMARK 3 L11: 3.7092 L22: 2.6722 REMARK 3 L33: 6.0857 L12: 1.1952 REMARK 3 L13: -0.8578 L23: -2.5869 REMARK 3 S TENSOR REMARK 3 S11: 0.2859 S12: 0.6343 S13: 0.4317 REMARK 3 S21: -0.0329 S22: 0.0005 S23: 0.9723 REMARK 3 S31: -1.4847 S32: 1.6408 S33: -0.0017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 401 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8093 11.6581 12.3207 REMARK 3 T TENSOR REMARK 3 T11: 1.3814 T22: 1.1973 REMARK 3 T33: 1.0666 T12: 0.2074 REMARK 3 T13: -0.0982 T23: 0.1050 REMARK 3 L TENSOR REMARK 3 L11: 3.3235 L22: 4.9865 REMARK 3 L33: 7.1322 L12: 2.7926 REMARK 3 L13: -2.7880 L23: 1.3059 REMARK 3 S TENSOR REMARK 3 S11: -0.3006 S12: 0.7381 S13: 0.4301 REMARK 3 S21: -1.0671 S22: -0.4526 S23: 0.2425 REMARK 3 S31: -0.4997 S32: 0.0673 S33: 0.5887 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 411 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1447 -9.5177 37.4719 REMARK 3 T TENSOR REMARK 3 T11: 1.3385 T22: 0.8391 REMARK 3 T33: 0.9753 T12: 0.0475 REMARK 3 T13: 0.0074 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 5.4519 L22: 5.2645 REMARK 3 L33: 4.9261 L12: -3.7004 REMARK 3 L13: -2.4597 L23: 2.2933 REMARK 3 S TENSOR REMARK 3 S11: 0.2836 S12: -0.2596 S13: -0.8419 REMARK 3 S21: 0.3738 S22: -0.2835 S23: 0.5223 REMARK 3 S31: -0.0856 S32: 1.0911 S33: 0.0770 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1525 -5.8836 4.4221 REMARK 3 T TENSOR REMARK 3 T11: 1.2437 T22: 0.9789 REMARK 3 T33: 0.8465 T12: 0.0551 REMARK 3 T13: 0.1646 T23: -0.0719 REMARK 3 L TENSOR REMARK 3 L11: 6.6602 L22: 6.4835 REMARK 3 L33: 7.5603 L12: 3.1667 REMARK 3 L13: -0.9792 L23: 0.8328 REMARK 3 S TENSOR REMARK 3 S11: -1.0210 S12: 1.4690 S13: 0.1757 REMARK 3 S21: -1.3269 S22: 0.7621 S23: -0.4600 REMARK 3 S31: 0.7144 S32: 0.2675 S33: 0.2381 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1962 -3.3017 8.0817 REMARK 3 T TENSOR REMARK 3 T11: 1.0781 T22: 0.7791 REMARK 3 T33: 0.8277 T12: -0.1190 REMARK 3 T13: 0.0517 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 7.8078 L22: 2.9848 REMARK 3 L33: 6.2266 L12: -0.4197 REMARK 3 L13: -0.4039 L23: 0.5169 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: 0.9776 S13: 0.0049 REMARK 3 S21: -0.2017 S22: 0.2716 S23: -0.4616 REMARK 3 S31: 0.2128 S32: 0.3086 S33: 0.0363 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6729 -22.3501 26.4304 REMARK 3 T TENSOR REMARK 3 T11: 1.2944 T22: 0.8422 REMARK 3 T33: 1.2060 T12: 0.3044 REMARK 3 T13: -0.0610 T23: 0.1294 REMARK 3 L TENSOR REMARK 3 L11: 2.7802 L22: 3.8638 REMARK 3 L33: 6.4464 L12: 1.2273 REMARK 3 L13: -1.3283 L23: -0.1953 REMARK 3 S TENSOR REMARK 3 S11: 0.2371 S12: -0.1502 S13: -0.8568 REMARK 3 S21: -0.4490 S22: -0.2948 S23: -0.0043 REMARK 3 S31: 0.4324 S32: 0.2415 S33: 0.1654 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6645 24.6831 52.8208 REMARK 3 T TENSOR REMARK 3 T11: 0.9960 T22: 0.8720 REMARK 3 T33: 1.3009 T12: 0.2267 REMARK 3 T13: 0.2830 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 6.1811 L22: 3.5787 REMARK 3 L33: 5.7656 L12: -4.6885 REMARK 3 L13: 4.2765 L23: -3.5566 REMARK 3 S TENSOR REMARK 3 S11: 0.4525 S12: 0.6016 S13: -0.0101 REMARK 3 S21: 0.9879 S22: -0.8185 S23: 1.0737 REMARK 3 S31: 0.1960 S32: 1.4248 S33: 0.8577 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7539 4.6825 44.5374 REMARK 3 T TENSOR REMARK 3 T11: 0.7939 T22: 0.6648 REMARK 3 T33: 0.7928 T12: 0.0178 REMARK 3 T13: 0.0555 T23: -0.0752 REMARK 3 L TENSOR REMARK 3 L11: 3.6004 L22: 2.5613 REMARK 3 L33: 7.1249 L12: -0.0070 REMARK 3 L13: 0.4283 L23: -2.6060 REMARK 3 S TENSOR REMARK 3 S11: 0.1354 S12: -0.1454 S13: -0.1740 REMARK 3 S21: 0.1973 S22: -0.2062 S23: 0.1604 REMARK 3 S31: 0.0693 S32: 0.4686 S33: 0.0594 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2346 11.8180 21.1104 REMARK 3 T TENSOR REMARK 3 T11: 1.1265 T22: 0.7160 REMARK 3 T33: 0.9232 T12: 0.1997 REMARK 3 T13: -0.0526 T23: 0.1151 REMARK 3 L TENSOR REMARK 3 L11: 5.2188 L22: 2.8918 REMARK 3 L33: 7.2197 L12: -0.0372 REMARK 3 L13: 0.6092 L23: 2.4235 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: 0.6618 S13: -0.0576 REMARK 3 S21: -0.9830 S22: -0.0006 S23: 0.5474 REMARK 3 S31: -0.8846 S32: -0.3556 S33: 0.2550 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 10, 2022 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CA ACETATE, 0.1 M NA CACODYLATE, REMARK 280 PH 6.5, 40% V/V PEG300, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.50400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.33550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.53250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.33550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.50400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.53250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 LEU A 86 REMARK 465 LYS A 87 REMARK 465 GLU A 88 REMARK 465 LEU A 89 REMARK 465 GLU A 90 REMARK 465 ASN A 91 REMARK 465 LEU A 92 REMARK 465 GLY A 181 REMARK 465 GLN A 182 REMARK 465 GLY A 183 REMARK 465 GLY A 184 REMARK 465 LEU A 185 REMARK 465 ILE A 186 REMARK 465 GLU A 187 REMARK 465 GLU A 188 REMARK 465 PRO A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 ASP A 192 REMARK 465 GLU A 193 REMARK 465 LEU A 194 REMARK 465 PRO A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 PHE A 277 REMARK 465 ARG A 278 REMARK 465 HIS A 279 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 LEU B 185 REMARK 465 ILE B 186 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 PRO B 189 REMARK 465 THR B 190 REMARK 465 GLY B 191 REMARK 465 ASP B 192 REMARK 465 GLU B 193 REMARK 465 LEU B 194 REMARK 465 PRO B 195 REMARK 465 THR B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 GLY B 199 REMARK 465 ARG B 200 REMARK 465 PHE B 277 REMARK 465 ARG B 278 REMARK 465 HIS B 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 247 OG SER A 249 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 226 OE2 GLU B 105 3545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG F 405 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 224 178.04 -59.34 REMARK 500 VAL A 233 -73.94 -47.93 REMARK 500 ARG A 238 -73.38 -55.21 REMARK 500 LEU B 139 -166.56 -75.90 REMARK 500 GLN B 250 33.26 -84.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 168 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8PI9 E 301 321 PDB 8PI9 8PI9 301 321 DBREF 8PI9 F 401 421 PDB 8PI9 8PI9 401 421 DBREF 8PI9 A 83 279 UNP P20823 HNF1A_HUMAN 83 279 DBREF 8PI9 B 83 279 UNP P20823 HNF1A_HUMAN 83 279 SEQADV 8PI9 GLY A 82 UNP P20823 EXPRESSION TAG SEQADV 8PI9 GLY B 82 UNP P20823 EXPRESSION TAG SEQRES 1 E 21 DA DC DT DG DA DT DT DA DC DT DC DT DT SEQRES 2 E 21 DT DA DA DC DG DT DA DT SEQRES 1 F 21 DA DT DA DC DG DT DT DA DA DA DG DA DG SEQRES 2 F 21 DT DA DA DT DC DA DG DT SEQRES 1 A 198 GLY PRO PRO ILE LEU LYS GLU LEU GLU ASN LEU SER PRO SEQRES 2 A 198 GLU GLU ALA ALA HIS GLN LYS ALA VAL VAL GLU THR LEU SEQRES 3 A 198 LEU GLN GLU ASP PRO TRP ARG VAL ALA LYS MET VAL LYS SEQRES 4 A 198 SER TYR LEU GLN GLN HIS ASN ILE PRO GLN ARG GLU VAL SEQRES 5 A 198 VAL ASP THR THR GLY LEU ASN GLN SER HIS LEU SER GLN SEQRES 6 A 198 HIS LEU ASN LYS GLY THR PRO MET LYS THR GLN LYS ARG SEQRES 7 A 198 ALA ALA LEU TYR THR TRP TYR VAL ARG LYS GLN ARG GLU SEQRES 8 A 198 VAL ALA GLN GLN PHE THR HIS ALA GLY GLN GLY GLY LEU SEQRES 9 A 198 ILE GLU GLU PRO THR GLY ASP GLU LEU PRO THR LYS LYS SEQRES 10 A 198 GLY ARG ARG ASN ARG PHE LYS TRP GLY PRO ALA SER GLN SEQRES 11 A 198 GLN ILE LEU PHE GLN ALA TYR GLU ARG GLN LYS ASN PRO SEQRES 12 A 198 SER LYS GLU GLU ARG GLU THR LEU VAL GLU GLU CYS ASN SEQRES 13 A 198 ARG ALA GLU CYS ILE GLN ARG GLY VAL SER PRO SER GLN SEQRES 14 A 198 ALA GLN GLY LEU GLY SER ASN LEU VAL THR GLU VAL ARG SEQRES 15 A 198 VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU GLU ALA SEQRES 16 A 198 PHE ARG HIS SEQRES 1 B 198 GLY PRO PRO ILE LEU LYS GLU LEU GLU ASN LEU SER PRO SEQRES 2 B 198 GLU GLU ALA ALA HIS GLN LYS ALA VAL VAL GLU THR LEU SEQRES 3 B 198 LEU GLN GLU ASP PRO TRP ARG VAL ALA LYS MET VAL LYS SEQRES 4 B 198 SER TYR LEU GLN GLN HIS ASN ILE PRO GLN ARG GLU VAL SEQRES 5 B 198 VAL ASP THR THR GLY LEU ASN GLN SER HIS LEU SER GLN SEQRES 6 B 198 HIS LEU ASN LYS GLY THR PRO MET LYS THR GLN LYS ARG SEQRES 7 B 198 ALA ALA LEU TYR THR TRP TYR VAL ARG LYS GLN ARG GLU SEQRES 8 B 198 VAL ALA GLN GLN PHE THR HIS ALA GLY GLN GLY GLY LEU SEQRES 9 B 198 ILE GLU GLU PRO THR GLY ASP GLU LEU PRO THR LYS LYS SEQRES 10 B 198 GLY ARG ARG ASN ARG PHE LYS TRP GLY PRO ALA SER GLN SEQRES 11 B 198 GLN ILE LEU PHE GLN ALA TYR GLU ARG GLN LYS ASN PRO SEQRES 12 B 198 SER LYS GLU GLU ARG GLU THR LEU VAL GLU GLU CYS ASN SEQRES 13 B 198 ARG ALA GLU CYS ILE GLN ARG GLY VAL SER PRO SER GLN SEQRES 14 B 198 ALA GLN GLY LEU GLY SER ASN LEU VAL THR GLU VAL ARG SEQRES 15 B 198 VAL TYR ASN TRP PHE ALA ASN ARG ARG LYS GLU GLU ALA SEQRES 16 B 198 PHE ARG HIS HELIX 1 AA1 ALA A 98 GLU A 110 1 13 HELIX 2 AA2 ASP A 111 ASN A 127 1 17 HELIX 3 AA3 PRO A 129 GLY A 138 1 10 HELIX 4 AA4 ASN A 140 GLY A 151 1 12 HELIX 5 AA5 LYS A 155 ALA A 180 1 26 HELIX 6 AA6 GLY A 207 GLN A 221 1 15 HELIX 7 AA7 SER A 225 ARG A 244 1 20 HELIX 8 AA8 ALA A 251 LEU A 258 5 8 HELIX 9 AA9 THR A 260 LYS A 273 1 14 HELIX 10 AB1 ILE B 85 ASN B 91 1 7 HELIX 11 AB2 SER B 93 GLN B 109 1 17 HELIX 12 AB3 ASP B 111 HIS B 126 1 16 HELIX 13 AB4 PRO B 129 GLY B 138 1 10 HELIX 14 AB5 ASN B 140 LYS B 150 1 11 HELIX 15 AB6 LYS B 155 HIS B 179 1 25 HELIX 16 AB7 GLY B 207 GLN B 221 1 15 HELIX 17 AB8 SER B 225 ARG B 244 1 20 HELIX 18 AB9 SER B 247 LEU B 258 5 12 HELIX 19 AC1 THR B 260 GLU B 274 1 15 CRYST1 49.008 53.065 202.671 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020405 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004934 0.00000