HEADER OXIDOREDUCTASE 27-JUN-23 8PKO TITLE THE ERAD MISFOLDED GLYCOPROTEIN CHECKPOINT COMPLEX FROM CHAETOMIUM TITLE 2 THERMOPHILUM (EDEM:PDI HETERODIMER). COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN,ALPHA-1,2-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHAETOMIUM THERMOPHILUM ENDOPLASMIC RETICULUM COMPND 8 DEGRADATION ENHANCING MANNOSIDASE (CTEDEM),CHAETOMIUM THERMOPHILUM COMPND 9 ENDOPLASMIC RETICULUM DEGRADATION ENHANCING MANNOSIDASE (CTEDEM), COMPND 10 CHAETOMIUM THERMOPHILUM ENDOPLASMIC RETICULUM DEGRADATION ENHANCING COMPND 11 MANNOSIDASE (CTEDEM),CHAETOMIUM THERMOPHILUM ENDOPLASMIC RETICULUM COMPND 12 DEGRADATION ENHANCING MANNOSIDASE (CTEDEM),CHAETOMIUM THERMOPHILUM COMPND 13 ENDOPLASMIC RETICULUM DEGRADATION ENHANCING MANNOSIDASE (CTEDEM), COMPND 14 CHAETOMIUM THERMOPHILUM ENDOPLASMIC RETICULUM DEGRADATION ENHANCING COMPND 15 MANNOSIDASE (CTEDEM),CHAETOMIUM THERMOPHILUM ENDOPLASMIC RETICULUM COMPND 16 DEGRADATION ENHANCING MANNOSIDASE (CTEDEM),CHAETOMIUM THERMOPHILUM COMPND 17 ENDOPLASMIC RETICULUM DEGRADATION ENHANCING MANNOSIDASE (CTEDEM); COMPND 18 MOL_ID: 2; COMPND 19 MOLECULE: PROTEIN DISULFIDE-ISOMERASE; COMPND 20 CHAIN: B; COMPND 21 EC: 5.3.4.1; COMPND 22 ENGINEERED: YES; COMPND 23 MUTATION: YES; COMPND 24 OTHER_DETAILS: CHAETOMIUM THERMOPHILUM ENDOPLASMIC RETICULUM COMPND 25 DEGRADATION ENHANCING PROTEIN DISULFIDE ISOMERASE (CTPDI) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: GFP, CTHT_0058730; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: CTEDEM_PHLSEC; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA; SOURCE 11 ORGANISM_TAXID: 209285; SOURCE 12 GENE: CTHT_0067360; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: CTEDEM_PHLSEC KEYWDS MANNOSIDASE, DISULFIDE ISOMERASE, GLYCOPROTEIN DEGRADATION, ERAD, KEYWDS 2 MISFOLDING, OXIDOREDUCTASE EXPDTA ELECTRON MICROSCOPY AUTHOR P.ROVERSI,C.J.HITCHMAN,A.LIA,Y.BAYO REVDAT 1 10-JUL-24 8PKO 0 JRNL AUTH P.ROVERSI,C.J.HITCHMAN,A.LIA,Y.BAYO JRNL TITL THE ERAD MISFOLDED GLYCOPROTEIN CHECKPOINT COMPLEX FROM JRNL TITL 2 CHAETOMIUM THERMOPHILUM (EDEM:PDI HETERODIMER). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 140000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8PKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131106. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF CHAETOMIUM REMARK 245 THERMOPHILUM ENDOPLASMIC REMARK 245 RETICULUM DEGRADATION ENHANCING REMARK 245 MANNOSIDASE (CTEDEM) AND REMARK 245 ENDOPLASMIC RETICULUM REMARK 245 DEGRADATION ENHANCING PROTEIN REMARK 245 DISULFIDE ISOMERASE (CTPDI); REMARK 245 CHAETOMIUM THERMOPHILUM REMARK 245 ENDOPLASMIC RETICULUM REMARK 245 DEGRADATION ENHANCING REMARK 245 MANNOSIDASE (CTEDEM); REMARK 245 ENDOPLASMIC RETICULUM REMARK 245 DEGRADATION ENHANCING PROTEIN REMARK 245 DISULFIDE ISOMERASE (CTPDI) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.02 REMARK 245 SAMPLE SUPPORT DETAILS : THE QUANTIFOIL AU300 R1.2/1.3 REMARK 245 HOLEY CARBON GRIDS WERE GLOW REMARK 245 DISCHARGED USING THE EMS REMARK 245 GLOQUBE. FOR GRIDS TO BE COATED REMARK 245 IN GO, THE GRAPHENE OXIDE REMARK 245 SETTING WAS USED (0.2M BAR, 40 REMARK 245 MA FOR 180 SECONDS). FOR GO REMARK 245 COATING, GRAPHENE OXIDE REMARK 245 SOLUTION (SIGMA) AT 0.2 MG/ML REMARK 245 WAS SPUN AT 300 G FOR 30 S TO REMARK 245 REMOVE LARGE AGGREGATES. 3 UL REMARK 245 WAS ADDED TO THE GRIDS FOR 1 REMARK 245 MINUTE, BEFORE BLOTTING WITH REMARK 245 WHATMAN NO1 FILTER PAPER AND REMARK 245 WASHING THREE TIMES WITH 20 UL REMARK 245 DROPS OF ULTRAPURE WATER. REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOTTING TIME 3 S, WAITING TIME REMARK 245 30 S SAMPLE VOLUME 3 UL, BLOT REMARK 245 FORCE 10 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : COEXPRESSED BY TRANSIENT CO REMARK 245 -TRANSFECTION OF TWO PLASMIDS; CTEDEM EXPRESSED AS A N-TERM GFP REMARK 245 FUSION, TRUNCATED AT THE N-TERM AND WITH HEXAHISTIDINE TAG AT REMARK 245 THE CTERM; CTPDI EXPRESSED AS A CTERM TRUNCATION WITH NO KDEL REMARK 245 AND A HEXAHISTIDINE TAG AT THE CTERM. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -182 REMARK 465 VAL A -181 REMARK 465 SER A -180 REMARK 465 LYS A -179 REMARK 465 GLY A -178 REMARK 465 GLU A -177 REMARK 465 LEU A -176 REMARK 465 PHE A -175 REMARK 465 THR A -174 REMARK 465 GLY A -173 REMARK 465 VAL A -172 REMARK 465 VAL A -171 REMARK 465 PRO A -170 REMARK 465 ILE A -169 REMARK 465 LEU A -168 REMARK 465 VAL A -167 REMARK 465 GLU A -166 REMARK 465 LEU A -165 REMARK 465 ASP A -164 REMARK 465 GLY A -163 REMARK 465 ASP A -162 REMARK 465 VAL A -161 REMARK 465 ASN A -160 REMARK 465 GLY A -159 REMARK 465 HIS A -158 REMARK 465 LYS A -157 REMARK 465 PHE A -156 REMARK 465 SER A -155 REMARK 465 VAL A -154 REMARK 465 SER A -153 REMARK 465 GLY A -152 REMARK 465 GLU A -151 REMARK 465 GLY A -150 REMARK 465 GLU A -149 REMARK 465 GLY A -148 REMARK 465 ASP A -147 REMARK 465 ALA A -146 REMARK 465 THR A -145 REMARK 465 TYR A -144 REMARK 465 GLY A -143 REMARK 465 LYS A -142 REMARK 465 LEU A -141 REMARK 465 THR A -140 REMARK 465 LEU A -139 REMARK 465 LYS A -138 REMARK 465 PHE A -137 REMARK 465 ILE A -136 REMARK 465 CYS A -135 REMARK 465 THR A -134 REMARK 465 THR A -133 REMARK 465 GLY A -132 REMARK 465 LYS A -131 REMARK 465 LEU A -130 REMARK 465 PRO A -129 REMARK 465 VAL A -128 REMARK 465 PRO A -127 REMARK 465 TRP A -126 REMARK 465 PRO A -125 REMARK 465 THR A -124 REMARK 465 LEU A -123 REMARK 465 VAL A -122 REMARK 465 THR A -121 REMARK 465 THR A -120 REMARK 465 LEU A -119 REMARK 465 THR A -118 REMARK 465 TYR A -117 REMARK 465 GLY A -116 REMARK 465 VAL A -115 REMARK 465 GLN A -114 REMARK 465 CYS A -113 REMARK 465 PHE A -112 REMARK 465 SER A -111 REMARK 465 ARG A -110 REMARK 465 TYR A -109 REMARK 465 PRO A -108 REMARK 465 ASP A -107 REMARK 465 HIS A -106 REMARK 465 MET A -105 REMARK 465 LYS A -104 REMARK 465 GLN A -103 REMARK 465 HIS A -102 REMARK 465 ASP A -101 REMARK 465 PHE A -100 REMARK 465 PHE A -99 REMARK 465 LYS A -98 REMARK 465 SER A -97 REMARK 465 ALA A -96 REMARK 465 MET A -95 REMARK 465 PRO A -94 REMARK 465 GLU A -93 REMARK 465 GLY A -92 REMARK 465 TYR A -91 REMARK 465 VAL A -90 REMARK 465 GLN A -89 REMARK 465 GLU A -88 REMARK 465 ARG A -87 REMARK 465 THR A -86 REMARK 465 ILE A -85 REMARK 465 PHE A -84 REMARK 465 PHE A -83 REMARK 465 LYS A -82 REMARK 465 ASP A -81 REMARK 465 ASP A -80 REMARK 465 GLY A -79 REMARK 465 ASN A -78 REMARK 465 TYR A -77 REMARK 465 LYS A -76 REMARK 465 THR A -75 REMARK 465 ARG A -74 REMARK 465 ALA A -73 REMARK 465 GLU A -72 REMARK 465 VAL A -71 REMARK 465 LYS A -70 REMARK 465 PHE A -69 REMARK 465 GLU A -68 REMARK 465 GLY A -67 REMARK 465 ASP A -66 REMARK 465 THR A -65 REMARK 465 LEU A -64 REMARK 465 VAL A -63 REMARK 465 ASN A -62 REMARK 465 ARG A -61 REMARK 465 ILE A -60 REMARK 465 GLU A -59 REMARK 465 LEU A -58 REMARK 465 LYS A -57 REMARK 465 GLY A -56 REMARK 465 ILE A -55 REMARK 465 ASP A -54 REMARK 465 PHE A -53 REMARK 465 LYS A -52 REMARK 465 GLU A -51 REMARK 465 ASP A -50 REMARK 465 GLY A -49 REMARK 465 ASN A -48 REMARK 465 ILE A -47 REMARK 465 LEU A -46 REMARK 465 GLY A -45 REMARK 465 HIS A -44 REMARK 465 LYS A -43 REMARK 465 LEU A -42 REMARK 465 GLU A -41 REMARK 465 TYR A -40 REMARK 465 ASN A -39 REMARK 465 TYR A -38 REMARK 465 ASN A -37 REMARK 465 SER A -36 REMARK 465 HIS A -35 REMARK 465 ASN A -34 REMARK 465 VAL A -33 REMARK 465 TYR A -32 REMARK 465 ILE A -31 REMARK 465 MET A -30 REMARK 465 ALA A -29 REMARK 465 ASP A -28 REMARK 465 LYS A -27 REMARK 465 GLN A -26 REMARK 465 LYS A -25 REMARK 465 ASN A -24 REMARK 465 GLY A -23 REMARK 465 ILE A -22 REMARK 465 LYS A -21 REMARK 465 VAL A -20 REMARK 465 ASN A -19 REMARK 465 PHE A -18 REMARK 465 LYS A -17 REMARK 465 ILE A -16 REMARK 465 ARG A -15 REMARK 465 HIS A -14 REMARK 465 ASN A -13 REMARK 465 ILE A -12 REMARK 465 GLU A -11 REMARK 465 ASP A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 VAL A -7 REMARK 465 GLN A -6 REMARK 465 LEU A -5 REMARK 465 ALA A -4 REMARK 465 ASP A -3 REMARK 465 HIS A -2 REMARK 465 TYR A -1 REMARK 465 GLN A 0 REMARK 465 GLN A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 14 REMARK 465 ASN A 15 REMARK 465 HIS A 16 REMARK 465 TYR A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 LYS A 26 REMARK 465 ASP A 27 REMARK 465 PRO A 28 REMARK 465 ASN A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 ARG A 32 REMARK 465 ASP A 33 REMARK 465 HIS A 34 REMARK 465 MET A 35 REMARK 465 VAL A 36 REMARK 465 LEU A 37 REMARK 465 LEU A 38 REMARK 465 GLU A 39 REMARK 465 PHE A 40 REMARK 465 VAL A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 GLY A 45 REMARK 465 ILE A 46 REMARK 465 THR A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 MET A 50 REMARK 465 ASP A 51 REMARK 465 GLU A 52 REMARK 465 LEU A 53 REMARK 465 TYR A 54 REMARK 465 LYS A 55 REMARK 465 ASP A 845 REMARK 465 ASN A 846 REMARK 465 LEU A 847 REMARK 465 ASP A 848 REMARK 465 THR A 849 REMARK 465 LEU A 850 REMARK 465 ASP A 851 REMARK 465 THR A 852 REMARK 465 ALA A 853 REMARK 465 SER A 854 REMARK 465 ALA A 855 REMARK 465 ILE A 856 REMARK 465 ASP A 857 REMARK 465 LEU A 858 REMARK 465 PRO A 859 REMARK 465 GLN A 860 REMARK 465 ASP A 861 REMARK 465 GLN A 862 REMARK 465 SER A 863 REMARK 465 SER A 864 REMARK 465 ASP A 865 REMARK 465 SER A 866 REMARK 465 GLU A 867 REMARK 465 VAL A 868 REMARK 465 PRO A 869 REMARK 465 ASP A 870 REMARK 465 PRO A 871 REMARK 465 ALA A 872 REMARK 465 ASN A 873 REMARK 465 LEU A 874 REMARK 465 SER A 875 REMARK 465 ALA A 876 REMARK 465 LEU A 877 REMARK 465 LEU A 878 REMARK 465 PRO A 879 REMARK 465 ASP A 880 REMARK 465 LEU A 881 REMARK 465 SER A 882 REMARK 465 SER A 883 REMARK 465 PHE A 884 REMARK 465 VAL A 885 REMARK 465 LYS A 886 REMARK 465 SER A 887 REMARK 465 LEU A 888 REMARK 465 PHE A 889 REMARK 465 ALA A 890 REMARK 465 ARG A 891 REMARK 465 LEU A 892 REMARK 465 SER A 893 REMARK 465 ASN A 894 REMARK 465 LEU A 895 REMARK 465 THR A 896 REMARK 465 SER A 897 REMARK 465 PRO A 898 REMARK 465 SER A 899 REMARK 465 PRO A 900 REMARK 465 ASP A 1084 REMARK 465 ASP A 1085 REMARK 465 GLY A 1086 REMARK 465 ASP A 1087 REMARK 465 GLY A 1088 REMARK 465 GLY A 1089 REMARK 465 VAL A 1090 REMARK 465 ASP A 1091 REMARK 465 GLY A 1092 REMARK 465 GLY A 1093 REMARK 465 THR A 1094 REMARK 465 LYS A 1095 REMARK 465 HIS A 1096 REMARK 465 HIS A 1097 REMARK 465 HIS A 1098 REMARK 465 HIS A 1099 REMARK 465 HIS A 1100 REMARK 465 HIS A 1101 REMARK 465 SER B 485 REMARK 465 GLU B 486 REMARK 465 THR B 487 REMARK 465 SER B 488 REMARK 465 ALA B 489 REMARK 465 THR B 490 REMARK 465 PRO B 491 REMARK 465 THR B 492 REMARK 465 SER B 493 REMARK 465 THR B 494 REMARK 465 ALA B 495 REMARK 465 ALA B 496 REMARK 465 SER B 497 REMARK 465 GLU B 498 REMARK 465 GLU B 499 REMARK 465 THR B 500 REMARK 465 ALA B 501 REMARK 465 ALA B 502 REMARK 465 SER B 503 REMARK 465 GLU B 504 REMARK 465 THR B 505 REMARK 465 ALA B 506 REMARK 465 SER B 507 REMARK 465 ALA B 508 REMARK 465 GLU B 509 REMARK 465 GLU B 510 REMARK 465 GLY B 511 REMARK 465 LYS B 512 REMARK 465 GLU B 513 REMARK 465 THR B 514 REMARK 465 ALA B 515 REMARK 465 GLY B 516 REMARK 465 THR B 517 REMARK 465 LYS B 518 REMARK 465 HIS B 519 REMARK 465 HIS B 520 REMARK 465 HIS B 521 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 HIS B 524 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1301 O HOH A 1303 1.76 REMARK 500 O HOH A 1301 O HOH A 1302 1.81 REMARK 500 OG1 THR A 608 O HOH A 1301 1.93 REMARK 500 ND2 ASN A 120 O5 NAG C 1 1.95 REMARK 500 O HOH A 1302 O HOH A 1303 1.97 REMARK 500 O THR A 608 O HOH A 1301 2.06 REMARK 500 ND2 ASN A 700 O LEU A 708 2.06 REMARK 500 OG SER A 318 O ASP A 323 2.06 REMARK 500 O ILE A 667 OH TYR A 704 2.07 REMARK 500 N THR B 134 OG1 THR B 137 2.08 REMARK 500 O LEU A 676 OG1 THR A 680 2.09 REMARK 500 O VAL B 153 OG SER B 181 2.10 REMARK 500 NZ LYS B 124 O ASP B 173 2.15 REMARK 500 NH2 ARG A 623 O6 NAG D 1 2.16 REMARK 500 O SER A 986 NZ LYS A 990 2.19 REMARK 500 CG ASN A 120 C1 NAG C 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 78 CD1 TYR A 78 CE1 -0.093 REMARK 500 TYR A 84 CD1 TYR A 84 CE1 -0.091 REMARK 500 TYR A 239 CE2 TYR A 239 CD2 -0.091 REMARK 500 TYR A 469 CZ TYR A 469 CE2 -0.084 REMARK 500 TYR A 469 CE2 TYR A 469 CD2 -0.092 REMARK 500 TYR A 489 CE2 TYR A 489 CD2 -0.096 REMARK 500 TYR A 539 CD1 TYR A 539 CE1 -0.091 REMARK 500 TYR A 586 CE2 TYR A 586 CD2 -0.091 REMARK 500 TYR A 704 CD1 TYR A 704 CE1 -0.103 REMARK 500 TYR A 704 CZ TYR A 704 CE2 -0.081 REMARK 500 TYR A 704 CE2 TYR A 704 CD2 -0.138 REMARK 500 TYR B 395 CE2 TYR B 395 CD2 -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 89 C - N - CA ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU A 452 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 MET A 696 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 99 63.00 60.49 REMARK 500 THR A 103 -166.73 -124.72 REMARK 500 ASP A 105 71.85 65.01 REMARK 500 ARG A 110 -72.53 -83.27 REMARK 500 ASN A 111 48.87 23.94 REMARK 500 ASP A 182 54.06 -93.18 REMARK 500 ASP A 184 58.08 -97.63 REMARK 500 ARG A 195 -60.20 -96.60 REMARK 500 ASN A 227 53.53 -165.71 REMARK 500 PHE A 237 -176.99 -68.03 REMARK 500 PRO A 256 -5.28 -56.96 REMARK 500 TYR A 259 43.74 -106.81 REMARK 500 GLU A 285 -76.83 70.28 REMARK 500 GLU A 294 24.29 47.23 REMARK 500 ALA A 367 -107.77 49.32 REMARK 500 GLN A 391 32.22 -94.58 REMARK 500 HIS A 398 42.63 -104.64 REMARK 500 LYS A 399 8.81 -64.97 REMARK 500 VAL A 401 -43.65 67.64 REMARK 500 SER A 414 -165.77 -74.91 REMARK 500 VAL A 458 -51.69 -130.63 REMARK 500 ALA A 498 -170.25 -176.80 REMARK 500 PRO A 557 1.63 -63.00 REMARK 500 ARG A 574 129.93 -170.75 REMARK 500 GLU A 582 -40.93 -136.97 REMARK 500 THR A 607 -176.23 -68.91 REMARK 500 ALA A 621 1.01 -68.72 REMARK 500 ASN A 626 -30.94 -131.86 REMARK 500 SER A 631 -146.57 51.42 REMARK 500 ALA A 634 88.53 -150.82 REMARK 500 THR A 644 -85.39 176.69 REMARK 500 SER A 646 141.29 -173.16 REMARK 500 PRO A 655 43.19 -84.44 REMARK 500 LEU A 656 -9.75 62.01 REMARK 500 SER A 682 2.76 -62.81 REMARK 500 HIS A 684 153.84 65.39 REMARK 500 ALA A 685 -154.36 50.05 REMARK 500 LEU A 686 -114.13 59.43 REMARK 500 MET A 696 79.73 58.07 REMARK 500 ALA A 697 -147.92 78.06 REMARK 500 LYS A 698 -7.19 82.22 REMARK 500 THR A 702 -8.34 64.23 REMARK 500 TRP A 706 -5.94 -56.59 REMARK 500 GLN A 738 -158.97 -89.36 REMARK 500 PHE A 745 -159.52 -149.51 REMARK 500 LEU A 757 -72.94 65.38 REMARK 500 LEU A 765 46.10 -142.23 REMARK 500 LEU A 767 46.28 -140.13 REMARK 500 ASP A 809 53.59 -141.28 REMARK 500 ASN A 816 30.87 -142.54 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 703 TYR A 704 -149.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 1204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 608 O REMARK 620 2 THR A 608 OG1 49.3 REMARK 620 3 MAN A1204 O3 125.4 85.9 REMARK 620 4 MAN A1204 O4 107.4 127.9 73.7 REMARK 620 5 HOH A1301 O 52.5 36.4 111.1 158.9 REMARK 620 6 HOH A1302 O 71.8 88.1 146.3 133.2 52.7 REMARK 620 7 HOH A1303 O 103.4 74.5 89.3 149.2 51.4 57.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-17749 RELATED DB: EMDB REMARK 900 THE ERAD MISFOLDED GLYCOPROTEIN CHECKPOINT COMPLEX FROM CHAETOMIUM REMARK 900 THERMOPHILUM (EDEM:PDI HETERODIMER). DBREF 8PKO A -177 55 UNP P42212 GFP_AEQVI 6 238 DBREF 8PKO A 184 1092 UNP G0SCX7 G0SCX7_CHATD 1 1092 DBREF 8PKO B 21 515 UNP G0SGS2 G0SGS2_CHATD 21 515 SEQADV 8PKO MET A -182 UNP P42212 INITIATING METHIONINE SEQADV 8PKO VAL A -181 UNP P42212 EXPRESSION TAG SEQADV 8PKO SER A -180 UNP P42212 EXPRESSION TAG SEQADV 8PKO LYS A -179 UNP P42212 EXPRESSION TAG SEQADV 8PKO GLY A -178 UNP P42212 EXPRESSION TAG SEQADV 8PKO LEU A -119 UNP P42212 PHE 64 CONFLICT SEQADV 8PKO THR A -118 UNP P42212 SER 65 CONFLICT SEQADV 8PKO LEU A 48 UNP P42212 HIS 231 CONFLICT SEQADV 8PKO LEU A 56 UNP P42212 LINKER SEQADV 8PKO GLU A 57 UNP P42212 LINKER SEQADV 8PKO VAL A 58 UNP P42212 LINKER SEQADV 8PKO LEU A 59 UNP P42212 LINKER SEQADV 8PKO PHE A 60 UNP P42212 LINKER SEQADV 8PKO GLN A 61 UNP P42212 LINKER SEQADV 8PKO GLY A 62 UNP P42212 LINKER SEQADV 8PKO GLY A 1093 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO THR A 1094 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO LYS A 1095 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO HIS A 1096 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO HIS A 1097 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO HIS A 1098 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO HIS A 1099 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO HIS A 1100 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO HIS A 1101 UNP G0SCX7 EXPRESSION TAG SEQADV 8PKO GLU B 18 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO THR B 19 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO GLY B 20 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO GLY B 516 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO THR B 517 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO LYS B 518 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO HIS B 519 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO HIS B 520 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO HIS B 521 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO HIS B 522 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO HIS B 523 UNP G0SGS2 EXPRESSION TAG SEQADV 8PKO HIS B 524 UNP G0SGS2 EXPRESSION TAG SEQRES 1 A 1284 MET VAL SER LYS GLY GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 1284 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 1284 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 1284 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 1284 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU THR SEQRES 6 A 1284 TYR GLY VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET SEQRES 7 A 1284 LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY SEQRES 8 A 1284 TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY SEQRES 9 A 1284 ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP SEQRES 10 A 1284 THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE SEQRES 11 A 1284 LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR SEQRES 12 A 1284 ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS SEQRES 13 A 1284 GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS SEQRES 14 A 1284 ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR SEQRES 15 A 1284 GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU SEQRES 16 A 1284 PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER SEQRES 17 A 1284 LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU SEQRES 18 A 1284 GLU PHE VAL THR ALA ALA GLY ILE THR LEU GLY MET ASP SEQRES 19 A 1284 GLU LEU TYR LYS LEU GLU VAL LEU PHE GLN GLY PRO ASP SEQRES 20 A 1284 ARG VAL ARG ALA LEU ARG ARG GLU THR VAL GLU MET PHE SEQRES 21 A 1284 TYR TYR GLY PHE ASP ASN TYR MET LYS VAL ALA PHE PRO SEQRES 22 A 1284 GLU ASP GLU LEU ARG PRO VAL SER CYS THR PRO LEU THR SEQRES 23 A 1284 ARG ASP LEU LYS ASN PRO ARG ASN PHE GLU LEU ASN ASP SEQRES 24 A 1284 VAL LEU GLY ASN TYR SER LEU THR LEU ILE ASP SER LEU SEQRES 25 A 1284 SER THR LEU ALA ILE LEU ALA SER ALA PRO ALA GLU ASP SEQRES 26 A 1284 SER GLY THR GLY PRO LYS ALA LEU ARG ASP PHE GLN ASP SEQRES 27 A 1284 GLY VAL ALA ALA LEU VAL GLU GLN TYR GLY ASP GLY ARG SEQRES 28 A 1284 PRO GLY PRO SER GLY VAL GLY ARG ARG ALA ARG GLY PHE SEQRES 29 A 1284 ASP LEU ASP SER LYS VAL GLN VAL PHE GLU THR VAL ILE SEQRES 30 A 1284 ARG GLY VAL GLY GLY LEU LEU SER ALA HIS LEU PHE ALA SEQRES 31 A 1284 ILE GLY ALA LEU PRO ILE THR GLY TYR GLN PRO LEU ARG SEQRES 32 A 1284 GLN GLU ASP ASP LEU PHE ASN PRO PRO PRO ILE PRO TRP SEQRES 33 A 1284 PRO ASN GLY PHE THR TYR ASP GLY GLN LEU LEU ARG LEU SEQRES 34 A 1284 ALA LEU ASP LEU ALA GLN ARG LEU LEU PRO ALA PHE TYR SEQRES 35 A 1284 THR LYS THR GLY LEU PRO TYR PRO ARG VAL ASN LEU ARG SEQRES 36 A 1284 HIS GLY ILE PRO PHE TYR VAL ASN SER PRO LEU HIS GLU SEQRES 37 A 1284 ASP PRO PRO ALA LYS GLY THR THR GLU GLY PRO PRO GLU SEQRES 38 A 1284 ILE THR GLU THR CYS SER ALA GLY ALA GLY SER LEU VAL SEQRES 39 A 1284 LEU GLU PHE THR VAL LEU SER ARG LEU THR GLY ASP PRO SEQRES 40 A 1284 ARG PHE GLU GLN ALA ALA LYS ARG ALA PHE TRP ALA VAL SEQRES 41 A 1284 TRP TYR ARG LYS SER GLN ILE GLY LEU ILE GLY ALA GLY SEQRES 42 A 1284 VAL ASP ALA GLU GLN GLY HIS TRP ILE GLY THR TYR SER SEQRES 43 A 1284 VAL ILE GLY ALA GLY ALA ASP SER PHE PHE GLU TYR ALA SEQRES 44 A 1284 LEU LYS SER HIS ILE LEU LEU SER GLY HIS ALA LEU PRO SEQRES 45 A 1284 ASN GLN THR HIS PRO SER PRO LEU HIS LYS ASP VAL ASN SEQRES 46 A 1284 TRP MET ASP PRO ASN THR LEU PHE GLU PRO LEU SER ASP SEQRES 47 A 1284 ALA GLU ASN SER ALA GLU SER PHE LEU GLU ALA TRP HIS SEQRES 48 A 1284 HIS ALA HIS ALA ALA ILE LYS ARG HIS LEU TYR SER GLU SEQRES 49 A 1284 ARG GLU HIS PRO HIS TYR ASP ASN VAL ASN LEU TRP THR SEQRES 50 A 1284 GLY SER LEU VAL SER HIS TRP VAL ASP SER LEU GLY ALA SEQRES 51 A 1284 TYR TYR SER GLY LEU LEU VAL LEU ALA GLY GLU VAL ASP SEQRES 52 A 1284 GLU ALA ILE GLU THR ASN LEU LEU TYR ALA ALA ILE TRP SEQRES 53 A 1284 THR ARG TYR ALA ALA LEU PRO GLU ARG TRP SER LEU ARG SEQRES 54 A 1284 GLU LYS THR VAL GLU GLY GLY LEU GLY TRP TRP PRO LEU SEQRES 55 A 1284 ARG PRO GLU PHE ILE GLU SER THR TYR HIS LEU TYR ARG SEQRES 56 A 1284 ALA THR LYS ASP PRO TRP TYR LEU TYR VAL GLY GLU MET SEQRES 57 A 1284 VAL LEU ARG ASP ILE THR ARG ARG CYS TRP THR PRO CYS SEQRES 58 A 1284 GLY TRP ALA GLY LEU GLN ASN VAL LEU SER GLY GLU LYS SEQRES 59 A 1284 SER ASP ARG MET GLU SER PHE PHE LEU GLY GLU THR THR SEQRES 60 A 1284 LYS TYR MET TYR LEU LEU PHE ASP ASP ASP HIS PRO LEU SEQRES 61 A 1284 ASN LYS LEU ASP ALA SER PHE VAL PHE THR THR GLU GLY SEQRES 62 A 1284 HIS PRO LEU ILE LEU PRO LYS PRO LYS SER ALA ARG ARG SEQRES 63 A 1284 SER ARG ASN SER PRO ARG SER SER GLN LYS ALA LEU THR SEQRES 64 A 1284 VAL TYR GLN GLY GLU GLY PHE THR ASN SER CYS PRO PRO SEQRES 65 A 1284 ARG PRO SER ILE THR PRO LEU SER GLY SER VAL ILE ALA SEQRES 66 A 1284 ALA ARG ASP ASP ILE TYR HIS PRO ALA ARG MET VAL ASP SEQRES 67 A 1284 LEU HIS LEU LEU THR THR SER LYS HIS ALA LEU ASP GLY SEQRES 68 A 1284 GLY GLN MET SER GLY GLN HIS MET ALA LYS SER ASN TYR SEQRES 69 A 1284 THR LEU TYR PRO TRP THR LEU PRO PRO GLU LEU LEU PRO SEQRES 70 A 1284 SER ASN GLY THR CYS ALA LYS VAL TYR GLN PRO HIS GLU SEQRES 71 A 1284 VAL THR LEU GLU PHE ALA SER ASN THR GLN GLN VAL LEU SEQRES 72 A 1284 GLY GLY SER ALA PHE ASN PHE MET LEU SER GLY GLN ASN SEQRES 73 A 1284 LEU GLU ARG LEU SER THR ASP ARG ILE ARG VAL LEU SER SEQRES 74 A 1284 LEU SER GLY LEU LYS ILE THR LEU GLN LEU VAL GLU GLU SEQRES 75 A 1284 GLY GLU ARG GLU TRP ARG VAL THR LYS LEU ASN GLY ILE SEQRES 76 A 1284 PRO LEU GLY ARG ASP GLU TYR VAL VAL ILE ASN ARG ALA SEQRES 77 A 1284 ILE LEU GLY ASP VAL SER ASP PRO ARG PHE ASN LEU VAL SEQRES 78 A 1284 ARG ASP PRO VAL ILE ALA LYS LEU GLN GLN LEU HIS GLN SEQRES 79 A 1284 VAL ASN LEU LEU ASP ASP THR THR THR GLU GLU HIS PRO SEQRES 80 A 1284 ASP ASN LEU ASP THR LEU ASP THR ALA SER ALA ILE ASP SEQRES 81 A 1284 LEU PRO GLN ASP GLN SER SER ASP SER GLU VAL PRO ASP SEQRES 82 A 1284 PRO ALA ASN LEU SER ALA LEU LEU PRO ASP LEU SER SER SEQRES 83 A 1284 PHE VAL LYS SER LEU PHE ALA ARG LEU SER ASN LEU THR SEQRES 84 A 1284 SER PRO SER PRO ASP PRO SER SER ASN LEU PRO LEU ASN SEQRES 85 A 1284 VAL VAL ILE ASN GLN THR ALA ILE LEU PRO THR GLY ILE SEQRES 86 A 1284 GLY ALA ALA PRO LEU PRO PRO ALA ALA SER ASN SER PRO SEQRES 87 A 1284 SER GLY ALA PRO ILE PRO VAL PHE GLY PRO VAL PRO GLU SEQRES 88 A 1284 SER LEU PHE PRO TRP LYS THR ILE TYR ALA ALA GLY GLU SEQRES 89 A 1284 ALA CYS ALA GLY PRO LEU PRO ASP SER ALA PRO ARG GLU SEQRES 90 A 1284 ASN GLN VAL ILE LEU ILE ARG ARG GLY GLY CYS SER PHE SEQRES 91 A 1284 SER ASP LYS LEU ALA ASN ILE PRO ALA PHE THR PRO SER SEQRES 92 A 1284 GLU GLU SER LEU GLN LEU VAL VAL VAL VAL SER ASP ASP SEQRES 93 A 1284 GLU HIS GLU GLY GLN SER GLY LEU VAL ARG PRO LEU LEU SEQRES 94 A 1284 ASP GLU ILE GLN HIS THR PRO GLY GLY MET PRO ARG ARG SEQRES 95 A 1284 HIS PRO ILE ALA MET VAL MET VAL GLY GLY GLY GLU THR SEQRES 96 A 1284 VAL TYR GLN GLN LEU SER VAL ALA SER ALA ILE GLY ILE SEQRES 97 A 1284 GLN ARG ARG TYR TYR ILE GLU SER SER GLY VAL LYS VAL SEQRES 98 A 1284 LYS ASN ILE ILE VAL ASP ASP GLY ASP GLY GLY VAL ASP SEQRES 99 A 1284 GLY GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 507 GLU THR GLY SER ASP VAL ILE GLN LEU LYS LYS ASP THR SEQRES 2 B 507 PHE ASP ASP PHE ILE LYS SER ASN ASP LEU VAL LEU ALA SEQRES 3 B 507 GLU PHE PHE ALA PRO TRP CYS GLY HIS CYS LYS ALA LEU SEQRES 4 B 507 ALA PRO GLU TYR GLU GLU ALA ALA THR ASN LEU LYS ASP SEQRES 5 B 507 LYS ASN ILE LYS LEU VAL LYS VAL ASP CYS THR GLU GLU SEQRES 6 B 507 THR GLU LEU CYS GLN GLU HIS GLY VAL GLU GLY TYR PRO SEQRES 7 B 507 THR LEU LYS VAL PHE ARG GLY LEU ASP ASN VAL THR PRO SEQRES 8 B 507 TYR LYS GLY GLN ARG LYS ALA ALA ALA ILE THR SER TYR SEQRES 9 B 507 MET ILE LYS GLN SER LEU PRO ALA VAL SER ASP VAL THR SEQRES 10 B 507 LYS ASP THR LEU GLU GLU PHE LYS LYS ALA ASP LYS VAL SEQRES 11 B 507 VAL LEU VAL ALA TYR VAL ASP ALA SER ASP LYS ALA SER SEQRES 12 B 507 ALA GLU VAL PHE LYS LYS VAL ALA GLU LYS LEU ARG ASP SEQRES 13 B 507 ASN TYR PRO PHE GLY SER SER SER ASP ALA GLU LEU ALA SEQRES 14 B 507 GLU ALA GLU GLY VAL LYS ALA PRO ALA ILE VAL LEU TYR SEQRES 15 B 507 LYS ASP PHE ASP GLU GLY LYS ALA VAL PHE THR GLU LYS SEQRES 16 B 507 PHE ASP GLU GLU ALA ILE GLN LYS TRP ALA LYS VAL ALA SEQRES 17 B 507 ALA THR PRO LEU ILE GLY GLU ILE GLY PRO GLU THR TYR SEQRES 18 B 507 GLY GLU TYR MET ALA ALA GLY ILE PRO LEU ALA TYR ILE SEQRES 19 B 507 PHE ALA GLU THR PRO GLU GLU ARG LYS GLU LEU SER GLU SEQRES 20 B 507 LYS LEU LYS PRO ILE ALA GLU ALA THR ARG GLY LYS ILE SEQRES 21 B 507 ASN PHE GLY THR ILE ASP ALA LYS ALA TYR GLY ALA HIS SEQRES 22 B 507 ALA GLY ASN LEU ASN LEU LYS THR ASP LYS PHE PRO ALA SEQRES 23 B 507 PHE ALA ILE GLN GLU THR THR LYS ASN GLN LYS PHE PRO SEQRES 24 B 507 TYR ASP GLN ASP LYS GLU ILE THR HIS ASP SER ILE LYS SEQRES 25 B 507 GLN PHE VAL ASP ASP TYR LEU ALA GLY LYS ILE GLU PRO SEQRES 26 B 507 SER ILE LYS SER GLU PRO ILE PRO GLU LYS GLN GLU GLY SEQRES 27 B 507 PRO VAL THR VAL VAL VAL ALA LYS THR TYR ASN ASP ILE SEQRES 28 B 507 VAL LEU ASP ASP THR LYS ASP VAL LEU ILE GLU PHE TYR SEQRES 29 B 507 ALA PRO TRP CYS GLY HIS CYS LYS ALA LEU ALA PRO LYS SEQRES 30 B 507 TYR GLU GLU LEU GLY ARG LEU TYR SER ASN SER GLU PHE SEQRES 31 B 507 LYS ASP ARG VAL VAL ILE ALA LYS ILE ASP ALA THR ALA SEQRES 32 B 507 ASN ASP VAL PRO ASP ASP ILE MET GLY PHE PRO THR ILE SEQRES 33 B 507 LYS MET TYR PRO ALA GLY ALA LYS ASP LYS PRO VAL THR SEQRES 34 B 507 TYR SER GLY ASN ARG SER VAL GLU ASP MET ILE LYS PHE SEQRES 35 B 507 VAL ALA GLU ASN GLY LYS TYR LYS ALA LEU ILE SER GLU SEQRES 36 B 507 ASN GLU GLU GLU ASN ALA THR ALA ALA SER SER SER SER SEQRES 37 B 507 GLU THR SER ALA THR PRO THR SER THR ALA ALA SER GLU SEQRES 38 B 507 GLU THR ALA ALA SER GLU THR ALA SER ALA GLU GLU GLY SEQRES 39 B 507 LYS GLU THR ALA GLY THR LYS HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET CA A1201 1 HET THJ A1202 5 HET NAG A1203 14 HET MAN A1204 11 HET NAG B 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM THJ THIOSULFATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 6 CA CA 2+ FORMUL 7 THJ O3 S2 2- FORMUL 11 HOH *3(H2 O) HELIX 1 AA1 GLY A 62 ALA A 88 1 27 HELIX 2 AA2 ASN A 111 ASP A 116 1 6 HELIX 3 AA3 SER A 122 ALA A 136 1 15 HELIX 4 AA4 GLY A 144 GLY A 165 1 22 HELIX 5 AA5 GLY A 170 VAL A 174 5 5 HELIX 6 AA6 VAL A 189 ILE A 208 1 20 HELIX 7 AA7 GLY A 241 LEU A 255 1 15 HELIX 8 AA8 PRO A 256 PHE A 258 5 3 HELIX 9 AA9 SER A 304 GLY A 308 1 5 HELIX 10 AB1 LEU A 310 GLY A 322 1 13 HELIX 11 AB2 PRO A 324 TYR A 339 1 16 HELIX 12 AB3 ALA A 369 LEU A 383 1 15 HELIX 13 AB4 ASP A 405 LEU A 409 5 5 HELIX 14 AB5 ASP A 415 ASN A 418 5 4 HELIX 15 AB6 SER A 419 LEU A 438 1 20 HELIX 16 AB7 LEU A 465 ALA A 467 5 3 HELIX 17 AB8 TYR A 468 GLY A 477 1 10 HELIX 18 AB9 GLU A 478 ALA A 497 1 20 HELIX 19 AC1 PRO A 521 LYS A 535 1 15 HELIX 20 AC2 PRO A 537 CYS A 554 1 18 HELIX 21 AC3 GLU A 576 GLU A 582 1 7 HELIX 22 AC4 GLU A 582 ASP A 592 1 11 HELIX 23 AC5 HIS A 595 LEU A 600 1 6 HELIX 24 AC6 VAL A 660 ARG A 664 5 5 HELIX 25 AC7 TYR A 668 VAL A 674 1 7 HELIX 26 AC8 ASP A 675 SER A 682 1 8 HELIX 27 AC9 SER A 699 LEU A 703 5 5 HELIX 28 AD1 PRO A 709 LEU A 713 5 5 HELIX 29 AD2 PHE A 745 LEU A 757 1 13 HELIX 30 AD3 ARG A 804 ASP A 809 5 6 HELIX 31 AD4 ASP A 969 GLU A 974 1 6 HELIX 32 AD5 SER A 986 LYS A 990 5 5 HELIX 33 AD6 GLU A 1051 ALA A 1060 1 10 HELIX 34 AD7 GLU A 1072 VAL A 1076 5 5 HELIX 35 AD8 ASP B 29 ASN B 38 1 10 HELIX 36 AD9 CYS B 50 LYS B 70 1 21 HELIX 37 AE1 GLU B 82 HIS B 89 1 8 HELIX 38 AE2 LYS B 114 LEU B 127 1 14 HELIX 39 AE3 THR B 134 ASP B 136 5 3 HELIX 40 AE4 THR B 137 LYS B 142 1 6 HELIX 41 AE5 LYS B 143 ASP B 145 5 3 HELIX 42 AE6 LYS B 158 LEU B 171 1 14 HELIX 43 AE7 ASP B 182 GLU B 189 1 8 HELIX 44 AE8 ASP B 214 THR B 227 1 14 HELIX 45 AE9 GLU B 236 MET B 242 1 7 HELIX 46 AF1 THR B 255 THR B 273 1 19 HELIX 47 AF2 TYR B 287 ASN B 295 5 9 HELIX 48 AF3 THR B 324 GLY B 338 1 15 HELIX 49 AF4 VAL B 361 LYS B 363 5 3 HELIX 50 AF5 THR B 364 VAL B 369 1 6 HELIX 51 AF6 CYS B 385 SER B 403 1 19 HELIX 52 AF7 SER B 452 GLY B 464 1 13 HELIX 53 AF8 ASN B 477 SER B 483 1 7 SHEET 1 AA1 2 GLU A 93 ARG A 95 0 SHEET 2 AA1 2 THR A 100 LEU A 102 -1 O THR A 100 N ARG A 95 SHEET 1 AA2 2 LYS A 186 GLN A 188 0 SHEET 2 AA2 2 ARG A 268 ASN A 270 -1 O VAL A 269 N VAL A 187 SHEET 1 AA3 2 ILE A 231 PRO A 232 0 SHEET 2 AA3 2 THR A 238 TYR A 239 -1 O TYR A 239 N ILE A 231 SHEET 1 AA4 3 GLU A 301 CYS A 303 0 SHEET 2 AA4 3 GLY A 350 ASP A 352 -1 O VAL A 351 N THR A 302 SHEET 3 AA4 3 TRP A 358 ILE A 359 -1 O ILE A 359 N GLY A 350 SHEET 1 AA5 3 TYR A 362 SER A 363 0 SHEET 2 AA5 3 ASN A 449 ASN A 451 -1 O VAL A 450 N SER A 363 SHEET 3 AA5 3 LEU A 457 SER A 459 -1 O VAL A 458 N ASN A 449 SHEET 1 AA6 2 TYR A 439 SER A 440 0 SHEET 2 AA6 2 HIS A 446 TYR A 447 -1 O HIS A 446 N SER A 440 SHEET 1 AA7 3 TRP A 461 ASP A 463 0 SHEET 2 AA7 3 ARG A 502 SER A 504 -1 O TRP A 503 N VAL A 462 SHEET 3 AA7 3 THR A 509 VAL A 510 -1 O THR A 509 N SER A 504 SHEET 1 AA8 2 TRP A 555 THR A 556 0 SHEET 2 AA8 2 GLY A 559 TRP A 560 -1 O GLY A 559 N THR A 556 SHEET 1 AA9 2 LEU A 563 ASN A 565 0 SHEET 2 AA9 2 GLU A 570 LYS A 571 -1 O GLU A 570 N GLN A 564 SHEET 1 AB1 2 VAL A 605 PHE A 606 0 SHEET 2 AB1 2 PRO A 612 LEU A 613 -1 O LEU A 613 N VAL A 605 SHEET 1 AB2 2 CYS A 719 ALA A 720 0 SHEET 2 AB2 2 GLY B 93 TYR B 94 -1 O TYR B 94 N CYS A 719 SHEET 1 AB3 4 VAL A 728 GLU A 731 0 SHEET 2 AB3 4 LYS A 771 LEU A 774 -1 O LEU A 774 N VAL A 728 SHEET 3 AB3 4 VAL A 786 LEU A 789 -1 O LYS A 788 N THR A 773 SHEET 4 AB3 4 ILE A 792 PRO A 793 -1 O ILE A 792 N LEU A 789 SHEET 1 AB4 2 ILE A 762 VAL A 764 0 SHEET 2 AB4 2 VAL A 800 ILE A 802 1 O VAL A 801 N ILE A 762 SHEET 1 AB5 2 ARG A 981 ARG A 982 0 SHEET 2 AB5 2 VAL A1010 SER A1011 1 O VAL A1010 N ARG A 982 SHEET 1 AB6 5 ILE B 24 GLN B 25 0 SHEET 2 AB6 5 LYS B 73 ASP B 78 1 O LEU B 74 N ILE B 24 SHEET 3 AB6 5 LEU B 40 PHE B 46 1 N GLU B 44 O VAL B 77 SHEET 4 AB6 5 THR B 96 ARG B 101 -1 O THR B 96 N PHE B 45 SHEET 5 AB6 5 ASN B 105 PRO B 108 -1 O ASN B 105 N ARG B 101 SHEET 1 AB7 2 LEU B 149 ALA B 151 0 SHEET 2 AB7 2 PHE B 177 SER B 179 1 O GLY B 178 N ALA B 151 SHEET 1 AB8 5 ILE B 230 GLU B 232 0 SHEET 2 AB8 5 ASN B 278 ASP B 283 1 O THR B 281 N GLY B 231 SHEET 3 AB8 5 LEU B 248 ALA B 253 1 N ALA B 253 O ILE B 282 SHEET 4 AB8 5 ALA B 303 GLN B 307 -1 O GLN B 307 N LEU B 248 SHEET 5 AB8 5 LYS B 314 TYR B 317 -1 O PHE B 315 N ILE B 306 SHEET 1 AB9 5 THR B 358 VAL B 359 0 SHEET 2 AB9 5 VAL B 411 ASP B 417 1 O ILE B 413 N THR B 358 SHEET 3 AB9 5 ASP B 375 TYR B 381 1 N LEU B 377 O ALA B 414 SHEET 4 AB9 5 THR B 432 TYR B 436 -1 O TYR B 436 N VAL B 376 SHEET 5 AB9 5 VAL B 445 THR B 446 -1 O VAL B 445 N MET B 435 SSBOND 1 CYS A 99 CYS A 558 1555 1555 2.04 SSBOND 2 CYS A 647 CYS B 385 1555 1555 2.01 SSBOND 3 CYS A 719 CYS B 50 1555 1555 2.02 SSBOND 4 CYS A 963 CYS A 985 1555 1555 2.02 SSBOND 5 CYS B 79 CYS B 86 1555 1555 2.02 LINK ND2 ASN A 120 C1 NAG C 1 1555 1555 1.41 LINK ND2 ASN A 390 C1 NAG D 1 1555 1555 1.42 LINK ND2 ASN A 716 C1 NAG E 1 1555 1555 1.48 LINK ND2 ASN A 913 C1 NAG A1203 1555 1555 1.44 LINK ND2 ASN B 477 C1 NAG B 601 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.43 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.45 LINK O THR A 608 CA CA A1201 1555 1555 2.52 LINK OG1 THR A 608 CA CA A1201 1555 1555 3.14 LINK CA CA A1201 O3 MAN A1204 1555 1555 2.05 LINK CA CA A1201 O4 MAN A1204 1555 1555 2.32 LINK CA CA A1201 O HOH A1301 1555 1555 2.01 LINK CA CA A1201 O HOH A1302 1555 1555 2.08 LINK CA CA A1201 O HOH A1303 1555 1555 2.04 CISPEP 1 PHE A 815 ASN A 816 0 -8.39 CISPEP 2 TYR B 94 PRO B 95 0 -3.88 CISPEP 3 ALA B 193 PRO B 194 0 -1.35 CISPEP 4 THR B 210 GLU B 211 0 11.37 CISPEP 5 PHE B 301 PRO B 302 0 7.21 CISPEP 6 PHE B 430 PRO B 431 0 -5.65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000