HEADER TRANSFERASE 28-JUN-23 8PM3 TITLE CRYSTAL STRUCTURE OF MAP2K6 WITH A COVALENT COMPOUND GCL94 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MAP KINASE KINASE 6,MAPKK 6,MAPK/ERK KINASE 6,MEK 6,STRESS- COMPND 5 ACTIVATED PROTEIN KINASE KINASE 3,SAPK KINASE 3,SAPKK-3,SAPKK3; COMPND 6 EC: 2.7.12.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: LIG IS A COVALENT COMPOUND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K6, MEK6, MKK6, PRKMK6, SKK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE, COVALENT, INHIBITOR, MAP2K6, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.Q.WANG,N.SEIDLER,S.ROEHM,M.GEHRINGER,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (SGC) REVDAT 1 20-SEP-23 8PM3 0 JRNL AUTH G.Q.WANG,N.SEIDLER,S.ROEHM,M.GEHRINGER,S.KNAPP, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF MAP2K6 WITH A COVALENT COMPOUND GCL94 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 84350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 334 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.921 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8851 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 8578 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11961 ; 1.509 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19822 ; 0.517 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1078 ; 6.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;10.457 ; 6.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1595 ;15.480 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1347 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10002 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1902 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4348 ; 3.143 ; 3.259 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4347 ; 3.143 ; 3.258 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5414 ; 4.438 ; 5.821 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5415 ; 4.439 ; 5.821 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4503 ; 4.094 ; 3.677 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4504 ; 4.094 ; 3.677 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6548 ; 6.109 ; 6.570 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10231 ; 7.476 ;32.290 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10188 ; 7.459 ;32.010 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292129025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MAGNESIUM CHLORIDE -- 30% REMARK 280 PEG500MME -- 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.76450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 45 REMARK 465 MET A 46 REMARK 465 ASP A 206 REMARK 465 ASP A 207 REMARK 465 VAL A 208 REMARK 465 ALA A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 211 REMARK 465 ILE A 212 REMARK 465 ASP A 213 REMARK 465 ALA A 214 REMARK 465 GLY A 215 REMARK 465 LEU A 229 REMARK 465 ASN A 230 REMARK 465 GLN A 231 REMARK 465 LYS A 232 REMARK 465 GLY A 233 REMARK 465 ASP A 334 REMARK 465 SER B 45 REMARK 465 MET B 46 REMARK 465 ASP B 206 REMARK 465 ASP B 207 REMARK 465 VAL B 208 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 465 ASP B 211 REMARK 465 ILE B 212 REMARK 465 ASP B 213 REMARK 465 ALA B 214 REMARK 465 GLY B 215 REMARK 465 ASN B 230 REMARK 465 GLN B 231 REMARK 465 LYS B 232 REMARK 465 GLY B 233 REMARK 465 ASP B 334 REMARK 465 SER C 45 REMARK 465 MET C 46 REMARK 465 VAL C 205 REMARK 465 ASP C 206 REMARK 465 ASP C 207 REMARK 465 VAL C 208 REMARK 465 ALA C 209 REMARK 465 LYS C 210 REMARK 465 ASP C 211 REMARK 465 ILE C 212 REMARK 465 ASP C 213 REMARK 465 ALA C 214 REMARK 465 GLY C 215 REMARK 465 GLN C 231 REMARK 465 LYS C 232 REMARK 465 GLY C 233 REMARK 465 ASP C 334 REMARK 465 SER D 45 REMARK 465 MET D 46 REMARK 465 ASP D 206 REMARK 465 ASP D 207 REMARK 465 VAL D 208 REMARK 465 ALA D 209 REMARK 465 LYS D 210 REMARK 465 ASP D 211 REMARK 465 ILE D 212 REMARK 465 ASP D 213 REMARK 465 ALA D 214 REMARK 465 GLY D 215 REMARK 465 CYS D 216 REMARK 465 ASN D 230 REMARK 465 GLN D 231 REMARK 465 LYS D 232 REMARK 465 GLY D 233 REMARK 465 ASP D 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 TRP A 260 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 260 CZ3 CH2 REMARK 470 LYS A 300 CD CE NZ REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 LEU B 229 CG CD1 CD2 REMARK 470 TRP B 260 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 260 CZ3 CH2 REMARK 470 LYS B 300 CD CE NZ REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 TRP D 260 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 260 CZ3 CH2 REMARK 470 LYS D 300 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 91 OH TYR A 203 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 132 -169.91 -106.11 REMARK 500 ASP A 179 54.10 -154.29 REMARK 500 ILE B 56 -61.18 -109.83 REMARK 500 MET B 132 -169.39 -108.33 REMARK 500 ASP B 179 53.91 -153.85 REMARK 500 MET C 132 -160.78 -112.64 REMARK 500 ASP C 179 52.55 -148.61 REMARK 500 GLU C 228 -154.31 -81.75 REMARK 500 ASP C 258 40.41 -84.38 REMARK 500 ARG D 121 -103.52 -113.59 REMARK 500 GLU D 122 60.12 -102.43 REMARK 500 MET D 132 -160.16 -110.75 REMARK 500 ASP D 179 52.07 -149.53 REMARK 500 GLU D 228 -174.27 -66.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 302 0.10 SIDE CHAIN REMARK 500 ARG B 302 0.10 SIDE CHAIN REMARK 500 ARG C 83 0.10 SIDE CHAIN REMARK 500 ARG C 224 0.09 SIDE CHAIN REMARK 500 ARG D 121 0.09 SIDE CHAIN REMARK 500 ARG D 302 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8PM3 A 47 334 UNP P52564 MP2K6_HUMAN 47 334 DBREF 8PM3 B 47 334 UNP P52564 MP2K6_HUMAN 47 334 DBREF 8PM3 C 47 334 UNP P52564 MP2K6_HUMAN 47 334 DBREF 8PM3 D 47 334 UNP P52564 MP2K6_HUMAN 47 334 SEQADV 8PM3 SER A 45 UNP P52564 EXPRESSION TAG SEQADV 8PM3 MET A 46 UNP P52564 EXPRESSION TAG SEQADV 8PM3 ASP A 207 UNP P52564 SER 207 ENGINEERED MUTATION SEQADV 8PM3 ASP A 211 UNP P52564 THR 211 ENGINEERED MUTATION SEQADV 8PM3 SER B 45 UNP P52564 EXPRESSION TAG SEQADV 8PM3 MET B 46 UNP P52564 EXPRESSION TAG SEQADV 8PM3 ASP B 207 UNP P52564 SER 207 ENGINEERED MUTATION SEQADV 8PM3 ASP B 211 UNP P52564 THR 211 ENGINEERED MUTATION SEQADV 8PM3 SER C 45 UNP P52564 EXPRESSION TAG SEQADV 8PM3 MET C 46 UNP P52564 EXPRESSION TAG SEQADV 8PM3 ASP C 207 UNP P52564 SER 207 ENGINEERED MUTATION SEQADV 8PM3 ASP C 211 UNP P52564 THR 211 ENGINEERED MUTATION SEQADV 8PM3 SER D 45 UNP P52564 EXPRESSION TAG SEQADV 8PM3 MET D 46 UNP P52564 EXPRESSION TAG SEQADV 8PM3 ASP D 207 UNP P52564 SER 207 ENGINEERED MUTATION SEQADV 8PM3 ASP D 211 UNP P52564 THR 211 ENGINEERED MUTATION SEQRES 1 A 290 SER MET GLU VAL LYS ALA ASP ASP LEU GLU PRO ILE MET SEQRES 2 A 290 GLU LEU GLY ARG GLY ALA TYR GLY VAL VAL GLU LYS MET SEQRES 3 A 290 ARG HIS VAL PRO SER GLY GLN ILE MET ALA VAL LYS ARG SEQRES 4 A 290 ILE ARG ALA THR VAL ASN SER GLN GLU GLN LYS ARG LEU SEQRES 5 A 290 LEU MET ASP LEU ASP ILE SER MET ARG THR VAL ASP CYS SEQRES 6 A 290 PRO PHE THR VAL THR PHE TYR GLY ALA LEU PHE ARG GLU SEQRES 7 A 290 GLY ASP VAL TRP ILE CYS MET GLU LEU MET ASP THR SER SEQRES 8 A 290 LEU ASP LYS PHE TYR LYS GLN VAL ILE ASP LYS GLY GLN SEQRES 9 A 290 THR ILE PRO GLU ASP ILE LEU GLY LYS ILE ALA VAL SER SEQRES 10 A 290 ILE VAL LYS ALA LEU GLU HIS LEU HIS SER LYS LEU SER SEQRES 11 A 290 VAL ILE HIS ARG ASP VAL LYS PRO SER ASN VAL LEU ILE SEQRES 12 A 290 ASN ALA LEU GLY GLN VAL LYS MET CYS ASP PHE GLY ILE SEQRES 13 A 290 SER GLY TYR LEU VAL ASP ASP VAL ALA LYS ASP ILE ASP SEQRES 14 A 290 ALA GLY CYS LYS PRO TYR MET ALA PRO GLU ARG ILE ASN SEQRES 15 A 290 PRO GLU LEU ASN GLN LYS GLY TYR SER VAL LYS SER ASP SEQRES 16 A 290 ILE TRP SER LEU GLY ILE THR MET ILE GLU LEU ALA ILE SEQRES 17 A 290 LEU ARG PHE PRO TYR ASP SER TRP GLY THR PRO PHE GLN SEQRES 18 A 290 GLN LEU LYS GLN VAL VAL GLU GLU PRO SER PRO GLN LEU SEQRES 19 A 290 PRO ALA ASP LYS PHE SER ALA GLU PHE VAL ASP PHE THR SEQRES 20 A 290 SER GLN CYS LEU LYS LYS ASN SER LYS GLU ARG PRO THR SEQRES 21 A 290 TYR PRO GLU LEU MET GLN HIS PRO PHE PHE THR LEU HIS SEQRES 22 A 290 GLU SER LYS GLY THR ASP VAL ALA SER PHE VAL LYS LEU SEQRES 23 A 290 ILE LEU GLY ASP SEQRES 1 B 290 SER MET GLU VAL LYS ALA ASP ASP LEU GLU PRO ILE MET SEQRES 2 B 290 GLU LEU GLY ARG GLY ALA TYR GLY VAL VAL GLU LYS MET SEQRES 3 B 290 ARG HIS VAL PRO SER GLY GLN ILE MET ALA VAL LYS ARG SEQRES 4 B 290 ILE ARG ALA THR VAL ASN SER GLN GLU GLN LYS ARG LEU SEQRES 5 B 290 LEU MET ASP LEU ASP ILE SER MET ARG THR VAL ASP CYS SEQRES 6 B 290 PRO PHE THR VAL THR PHE TYR GLY ALA LEU PHE ARG GLU SEQRES 7 B 290 GLY ASP VAL TRP ILE CYS MET GLU LEU MET ASP THR SER SEQRES 8 B 290 LEU ASP LYS PHE TYR LYS GLN VAL ILE ASP LYS GLY GLN SEQRES 9 B 290 THR ILE PRO GLU ASP ILE LEU GLY LYS ILE ALA VAL SER SEQRES 10 B 290 ILE VAL LYS ALA LEU GLU HIS LEU HIS SER LYS LEU SER SEQRES 11 B 290 VAL ILE HIS ARG ASP VAL LYS PRO SER ASN VAL LEU ILE SEQRES 12 B 290 ASN ALA LEU GLY GLN VAL LYS MET CYS ASP PHE GLY ILE SEQRES 13 B 290 SER GLY TYR LEU VAL ASP ASP VAL ALA LYS ASP ILE ASP SEQRES 14 B 290 ALA GLY CYS LYS PRO TYR MET ALA PRO GLU ARG ILE ASN SEQRES 15 B 290 PRO GLU LEU ASN GLN LYS GLY TYR SER VAL LYS SER ASP SEQRES 16 B 290 ILE TRP SER LEU GLY ILE THR MET ILE GLU LEU ALA ILE SEQRES 17 B 290 LEU ARG PHE PRO TYR ASP SER TRP GLY THR PRO PHE GLN SEQRES 18 B 290 GLN LEU LYS GLN VAL VAL GLU GLU PRO SER PRO GLN LEU SEQRES 19 B 290 PRO ALA ASP LYS PHE SER ALA GLU PHE VAL ASP PHE THR SEQRES 20 B 290 SER GLN CYS LEU LYS LYS ASN SER LYS GLU ARG PRO THR SEQRES 21 B 290 TYR PRO GLU LEU MET GLN HIS PRO PHE PHE THR LEU HIS SEQRES 22 B 290 GLU SER LYS GLY THR ASP VAL ALA SER PHE VAL LYS LEU SEQRES 23 B 290 ILE LEU GLY ASP SEQRES 1 C 290 SER MET GLU VAL LYS ALA ASP ASP LEU GLU PRO ILE MET SEQRES 2 C 290 GLU LEU GLY ARG GLY ALA TYR GLY VAL VAL GLU LYS MET SEQRES 3 C 290 ARG HIS VAL PRO SER GLY GLN ILE MET ALA VAL LYS ARG SEQRES 4 C 290 ILE ARG ALA THR VAL ASN SER GLN GLU GLN LYS ARG LEU SEQRES 5 C 290 LEU MET ASP LEU ASP ILE SER MET ARG THR VAL ASP CYS SEQRES 6 C 290 PRO PHE THR VAL THR PHE TYR GLY ALA LEU PHE ARG GLU SEQRES 7 C 290 GLY ASP VAL TRP ILE CYS MET GLU LEU MET ASP THR SER SEQRES 8 C 290 LEU ASP LYS PHE TYR LYS GLN VAL ILE ASP LYS GLY GLN SEQRES 9 C 290 THR ILE PRO GLU ASP ILE LEU GLY LYS ILE ALA VAL SER SEQRES 10 C 290 ILE VAL LYS ALA LEU GLU HIS LEU HIS SER LYS LEU SER SEQRES 11 C 290 VAL ILE HIS ARG ASP VAL LYS PRO SER ASN VAL LEU ILE SEQRES 12 C 290 ASN ALA LEU GLY GLN VAL LYS MET CYS ASP PHE GLY ILE SEQRES 13 C 290 SER GLY TYR LEU VAL ASP ASP VAL ALA LYS ASP ILE ASP SEQRES 14 C 290 ALA GLY CYS LYS PRO TYR MET ALA PRO GLU ARG ILE ASN SEQRES 15 C 290 PRO GLU LEU ASN GLN LYS GLY TYR SER VAL LYS SER ASP SEQRES 16 C 290 ILE TRP SER LEU GLY ILE THR MET ILE GLU LEU ALA ILE SEQRES 17 C 290 LEU ARG PHE PRO TYR ASP SER TRP GLY THR PRO PHE GLN SEQRES 18 C 290 GLN LEU LYS GLN VAL VAL GLU GLU PRO SER PRO GLN LEU SEQRES 19 C 290 PRO ALA ASP LYS PHE SER ALA GLU PHE VAL ASP PHE THR SEQRES 20 C 290 SER GLN CYS LEU LYS LYS ASN SER LYS GLU ARG PRO THR SEQRES 21 C 290 TYR PRO GLU LEU MET GLN HIS PRO PHE PHE THR LEU HIS SEQRES 22 C 290 GLU SER LYS GLY THR ASP VAL ALA SER PHE VAL LYS LEU SEQRES 23 C 290 ILE LEU GLY ASP SEQRES 1 D 290 SER MET GLU VAL LYS ALA ASP ASP LEU GLU PRO ILE MET SEQRES 2 D 290 GLU LEU GLY ARG GLY ALA TYR GLY VAL VAL GLU LYS MET SEQRES 3 D 290 ARG HIS VAL PRO SER GLY GLN ILE MET ALA VAL LYS ARG SEQRES 4 D 290 ILE ARG ALA THR VAL ASN SER GLN GLU GLN LYS ARG LEU SEQRES 5 D 290 LEU MET ASP LEU ASP ILE SER MET ARG THR VAL ASP CYS SEQRES 6 D 290 PRO PHE THR VAL THR PHE TYR GLY ALA LEU PHE ARG GLU SEQRES 7 D 290 GLY ASP VAL TRP ILE CYS MET GLU LEU MET ASP THR SER SEQRES 8 D 290 LEU ASP LYS PHE TYR LYS GLN VAL ILE ASP LYS GLY GLN SEQRES 9 D 290 THR ILE PRO GLU ASP ILE LEU GLY LYS ILE ALA VAL SER SEQRES 10 D 290 ILE VAL LYS ALA LEU GLU HIS LEU HIS SER LYS LEU SER SEQRES 11 D 290 VAL ILE HIS ARG ASP VAL LYS PRO SER ASN VAL LEU ILE SEQRES 12 D 290 ASN ALA LEU GLY GLN VAL LYS MET CYS ASP PHE GLY ILE SEQRES 13 D 290 SER GLY TYR LEU VAL ASP ASP VAL ALA LYS ASP ILE ASP SEQRES 14 D 290 ALA GLY CYS LYS PRO TYR MET ALA PRO GLU ARG ILE ASN SEQRES 15 D 290 PRO GLU LEU ASN GLN LYS GLY TYR SER VAL LYS SER ASP SEQRES 16 D 290 ILE TRP SER LEU GLY ILE THR MET ILE GLU LEU ALA ILE SEQRES 17 D 290 LEU ARG PHE PRO TYR ASP SER TRP GLY THR PRO PHE GLN SEQRES 18 D 290 GLN LEU LYS GLN VAL VAL GLU GLU PRO SER PRO GLN LEU SEQRES 19 D 290 PRO ALA ASP LYS PHE SER ALA GLU PHE VAL ASP PHE THR SEQRES 20 D 290 SER GLN CYS LEU LYS LYS ASN SER LYS GLU ARG PRO THR SEQRES 21 D 290 TYR PRO GLU LEU MET GLN HIS PRO PHE PHE THR LEU HIS SEQRES 22 D 290 GLU SER LYS GLY THR ASP VAL ALA SER PHE VAL LYS LEU SEQRES 23 D 290 ILE LEU GLY ASP HET ZLE A 401 18 HET ZLE B 401 18 HET ZLE C 401 18 HET ZLE D 401 18 HETNAM ZLE ~{N}-[3-(2-AZANYLPYRIDIN-4-YL)PHENYL]PROPANAMIDE FORMUL 5 ZLE 4(C14 H15 N3 O) FORMUL 9 HOH *422(H2 O) HELIX 1 AA1 LYS A 49 ASP A 51 5 3 HELIX 2 AA2 SER A 90 THR A 106 1 17 HELIX 3 AA3 LEU A 136 LYS A 146 1 11 HELIX 4 AA4 PRO A 151 SER A 174 1 24 HELIX 5 AA5 LYS A 181 SER A 183 5 3 HELIX 6 AA6 ALA A 221 ASN A 226 1 6 HELIX 7 AA7 SER A 235 LEU A 253 1 19 HELIX 8 AA8 THR A 262 GLU A 273 1 12 HELIX 9 AA9 SER A 284 LEU A 295 1 12 HELIX 10 AB1 ASN A 298 ARG A 302 5 5 HELIX 11 AB2 THR A 304 MET A 309 1 6 HELIX 12 AB3 HIS A 311 LYS A 320 1 10 HELIX 13 AB4 ASP A 323 GLY A 333 1 11 HELIX 14 AB5 LYS B 49 ASP B 51 5 3 HELIX 15 AB6 SER B 90 THR B 106 1 17 HELIX 16 AB7 LEU B 136 LYS B 146 1 11 HELIX 17 AB8 PRO B 151 SER B 174 1 24 HELIX 18 AB9 LYS B 181 SER B 183 5 3 HELIX 19 AC1 ALA B 221 ASN B 226 1 6 HELIX 20 AC2 SER B 235 LEU B 253 1 19 HELIX 21 AC3 THR B 262 GLU B 273 1 12 HELIX 22 AC4 SER B 284 LEU B 295 1 12 HELIX 23 AC5 ASN B 298 ARG B 302 5 5 HELIX 24 AC6 THR B 304 MET B 309 1 6 HELIX 25 AC7 HIS B 311 LYS B 320 1 10 HELIX 26 AC8 ASP B 323 GLY B 333 1 11 HELIX 27 AC9 LYS C 49 ASP C 51 5 3 HELIX 28 AD1 SER C 90 THR C 106 1 17 HELIX 29 AD2 LEU C 136 LYS C 146 1 11 HELIX 30 AD3 PRO C 151 SER C 174 1 24 HELIX 31 AD4 LYS C 181 SER C 183 5 3 HELIX 32 AD5 ALA C 221 ASN C 226 1 6 HELIX 33 AD6 SER C 235 LEU C 253 1 19 HELIX 34 AD7 THR C 262 GLU C 273 1 12 HELIX 35 AD8 SER C 284 LEU C 295 1 12 HELIX 36 AD9 THR C 304 MET C 309 1 6 HELIX 37 AE1 HIS C 311 LYS C 320 1 10 HELIX 38 AE2 ASP C 323 GLY C 333 1 11 HELIX 39 AE3 LYS D 49 ASP D 51 5 3 HELIX 40 AE4 SER D 90 THR D 106 1 17 HELIX 41 AE5 LEU D 136 LYS D 146 1 11 HELIX 42 AE6 PRO D 151 SER D 174 1 24 HELIX 43 AE7 LYS D 181 SER D 183 5 3 HELIX 44 AE8 ALA D 221 ASN D 226 1 6 HELIX 45 AE9 SER D 235 LEU D 253 1 19 HELIX 46 AF1 THR D 262 GLU D 273 1 12 HELIX 47 AF2 SER D 284 LEU D 295 1 12 HELIX 48 AF3 THR D 304 MET D 309 1 6 HELIX 49 AF4 HIS D 311 LYS D 320 1 10 HELIX 50 AF5 ASP D 323 GLY D 333 1 11 SHEET 1 AA1 5 LEU A 53 GLY A 62 0 SHEET 2 AA1 5 GLY A 65 HIS A 72 -1 O VAL A 67 N LEU A 59 SHEET 3 AA1 5 ILE A 78 ILE A 84 -1 O VAL A 81 N GLU A 68 SHEET 4 AA1 5 ASP A 124 MET A 129 -1 O MET A 129 N ALA A 80 SHEET 5 AA1 5 PHE A 115 ARG A 121 -1 N TYR A 116 O CYS A 128 SHEET 1 AA2 3 THR A 134 SER A 135 0 SHEET 2 AA2 3 VAL A 185 ILE A 187 -1 O ILE A 187 N THR A 134 SHEET 3 AA2 3 VAL A 193 MET A 195 -1 O LYS A 194 N LEU A 186 SHEET 1 AA3 5 LEU B 53 GLY B 62 0 SHEET 2 AA3 5 GLY B 65 HIS B 72 -1 O LYS B 69 N MET B 57 SHEET 3 AA3 5 ILE B 78 ILE B 84 -1 O VAL B 81 N GLU B 68 SHEET 4 AA3 5 VAL B 125 MET B 129 -1 O MET B 129 N ALA B 80 SHEET 5 AA3 5 PHE B 115 PHE B 120 -1 N TYR B 116 O CYS B 128 SHEET 1 AA4 3 THR B 134 SER B 135 0 SHEET 2 AA4 3 VAL B 185 ILE B 187 -1 O ILE B 187 N THR B 134 SHEET 3 AA4 3 VAL B 193 MET B 195 -1 O LYS B 194 N LEU B 186 SHEET 1 AA5 5 LEU C 53 GLY C 62 0 SHEET 2 AA5 5 GLY C 65 HIS C 72 -1 O LYS C 69 N MET C 57 SHEET 3 AA5 5 ILE C 78 ILE C 84 -1 O VAL C 81 N GLU C 68 SHEET 4 AA5 5 ASP C 124 MET C 129 -1 O MET C 129 N ALA C 80 SHEET 5 AA5 5 PHE C 115 ARG C 121 -1 N TYR C 116 O CYS C 128 SHEET 1 AA6 3 THR C 134 SER C 135 0 SHEET 2 AA6 3 VAL C 185 ILE C 187 -1 O ILE C 187 N THR C 134 SHEET 3 AA6 3 VAL C 193 MET C 195 -1 O LYS C 194 N LEU C 186 SHEET 1 AA7 5 LEU D 53 GLY D 62 0 SHEET 2 AA7 5 GLY D 65 HIS D 72 -1 O LYS D 69 N MET D 57 SHEET 3 AA7 5 ILE D 78 ILE D 84 -1 O VAL D 81 N GLU D 68 SHEET 4 AA7 5 VAL D 125 MET D 129 -1 O MET D 129 N ALA D 80 SHEET 5 AA7 5 PHE D 115 PHE D 120 -1 N GLY D 117 O CYS D 128 SHEET 1 AA8 3 THR D 134 SER D 135 0 SHEET 2 AA8 3 VAL D 185 ILE D 187 -1 O ILE D 187 N THR D 134 SHEET 3 AA8 3 VAL D 193 MET D 195 -1 O LYS D 194 N LEU D 186 LINK SG CYS A 196 C1 ZLE A 401 1555 1555 1.82 LINK SG CYS B 196 C1 ZLE B 401 1555 1555 1.81 LINK SG CYS C 196 C1 ZLE C 401 1555 1555 1.82 LINK SG CYS D 196 C1 ZLE D 401 1555 1555 1.83 CRYST1 66.328 97.529 104.550 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009565 0.00000