HEADER TRANSCRIPTION 28-JUN-23 8PM7 TITLE TRANSCRIPTION FACTOR BARHL2 BOUND TO TAATC DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: B, D, F, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: I, J, K, L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BARH-LIKE 2 HOMEOBOX PROTEIN; COMPND 11 CHAIN: A, C, E, G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: BARHL2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET20A-SBP KEYWDS HOMEOBOX TRANSCRIPTION FACTOR BARHL2, DNA-BINDING DOMAIN, COMPLEX KEYWDS 2 WITH DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE REVDAT 1 10-JUL-24 8PM7 0 JRNL AUTH E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE JRNL TITL TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 62496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2066 REMARK 3 NUCLEIC ACID ATOMS : 1944 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 452 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4424 ; 0.020 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 3140 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6204 ; 2.481 ; 1.708 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7253 ; 1.237 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 732 ; 9.063 ; 5.644 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;29.166 ;20.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;15.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.206 ; 0.239 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3570 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 946 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 12 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 1 24 D 1 24 2212 0.050 0.050 REMARK 3 2 B 1 24 F 1 24 2219 0.080 0.050 REMARK 3 3 B 1 24 H 1 24 2201 0.070 0.050 REMARK 3 4 D 1 24 F 1 24 2206 0.090 0.050 REMARK 3 5 D 1 24 H 1 24 2171 0.090 0.050 REMARK 3 6 F 1 24 H 1 24 2226 0.090 0.050 REMARK 3 7 A 231 288 C 231 288 1899 0.120 0.050 REMARK 3 8 A 232 290 E 232 290 1939 0.120 0.050 REMARK 3 9 A 232 290 G 232 290 1944 0.120 0.050 REMARK 3 10 C 232 288 E 232 288 1880 0.090 0.050 REMARK 3 11 C 232 288 G 232 288 1857 0.110 0.050 REMARK 3 12 E 232 291 G 232 291 1933 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7307 5.1755 17.0907 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.1419 REMARK 3 T33: 0.2770 T12: 0.0528 REMARK 3 T13: -0.0596 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 4.9091 L22: 2.7574 REMARK 3 L33: 2.8311 L12: -0.0264 REMARK 3 L13: 1.1520 L23: -0.1341 REMARK 3 S TENSOR REMARK 3 S11: -0.1438 S12: -0.6553 S13: 0.2547 REMARK 3 S21: 0.2013 S22: 0.1927 S23: -0.1208 REMARK 3 S31: -0.2223 S32: 0.0499 S33: -0.0490 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 24 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7866 6.8625 -11.1669 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1079 REMARK 3 T33: 0.2662 T12: -0.0332 REMARK 3 T13: -0.0822 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.3422 L22: 2.7958 REMARK 3 L33: 3.7675 L12: -0.9854 REMARK 3 L13: -2.1824 L23: -0.1735 REMARK 3 S TENSOR REMARK 3 S11: -0.1949 S12: 0.5732 S13: -0.2159 REMARK 3 S21: -0.2099 S22: 0.1123 S23: -0.0851 REMARK 3 S31: 0.1324 S32: 0.0902 S33: 0.0826 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 24 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7017 -24.8565 20.2264 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.0935 REMARK 3 T33: 0.2959 T12: 0.0164 REMARK 3 T13: -0.1288 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.9793 L22: 3.6322 REMARK 3 L33: 6.4917 L12: -0.8401 REMARK 3 L13: -1.4953 L23: 1.5649 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: -0.0694 S13: 0.0929 REMARK 3 S21: -0.1416 S22: 0.0954 S23: -0.3337 REMARK 3 S31: -0.0312 S32: 0.3758 S33: -0.1702 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 24 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2470 -27.9857 -11.8160 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.0103 REMARK 3 T33: 0.2335 T12: -0.0060 REMARK 3 T13: -0.1337 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.7938 L22: 4.4896 REMARK 3 L33: 5.0345 L12: -0.2324 REMARK 3 L13: 0.1420 L23: -0.7934 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.1048 S13: -0.0010 REMARK 3 S21: -0.1762 S22: -0.0823 S23: 0.0008 REMARK 3 S31: 0.2411 S32: -0.1364 S33: 0.0733 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3901 -3.9993 8.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0050 REMARK 3 T33: 0.2287 T12: -0.0041 REMARK 3 T13: -0.0856 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 4.4917 L22: 5.3336 REMARK 3 L33: 4.2299 L12: -1.5959 REMARK 3 L13: 0.6360 L23: 0.0807 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.1275 S13: -0.0202 REMARK 3 S21: -0.1720 S22: 0.1027 S23: -0.1577 REMARK 3 S31: 0.0099 S32: 0.0322 S33: -0.0889 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 231 C 289 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6154 16.3046 -1.9914 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0203 REMARK 3 T33: 0.2750 T12: 0.0029 REMARK 3 T13: -0.0929 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.7923 L22: 4.5181 REMARK 3 L33: 5.1590 L12: 0.4093 REMARK 3 L13: -0.7580 L23: 0.1497 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.0648 S13: 0.0268 REMARK 3 S21: -0.0178 S22: 0.0800 S23: -0.2689 REMARK 3 S31: -0.1409 S32: 0.2209 S33: -0.0572 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 232 E 291 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0241 -28.2199 14.8132 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.0245 REMARK 3 T33: 0.2351 T12: 0.0040 REMARK 3 T13: -0.1312 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.5452 L22: 6.1749 REMARK 3 L33: 3.0806 L12: -0.8018 REMARK 3 L13: 0.3514 L23: 1.4143 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.0640 S13: -0.1922 REMARK 3 S21: 0.0195 S22: 0.0341 S23: 0.1415 REMARK 3 S31: 0.1084 S32: -0.0447 S33: 0.0234 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 232 G 291 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2301 -15.8626 -16.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.0468 REMARK 3 T33: 0.2613 T12: 0.0632 REMARK 3 T13: -0.1149 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.5970 L22: 4.5101 REMARK 3 L33: 7.0961 L12: -0.3756 REMARK 3 L13: 0.3469 L23: 0.2029 REMARK 3 S TENSOR REMARK 3 S11: 0.1703 S12: 0.3150 S13: 0.1486 REMARK 3 S21: -0.3846 S22: -0.1327 S23: -0.0859 REMARK 3 S31: -0.2099 S32: -0.0525 S33: -0.0377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8PM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 2.13300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM MALONATE, SODIUM REMARK 280 ACETATE, PH 4.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.90350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, I, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, K, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 292 REMARK 465 GLN C 290 REMARK 465 THR C 291 REMARK 465 ALA C 292 REMARK 465 LYS E 231 REMARK 465 ALA E 292 REMARK 465 LYS G 231 REMARK 465 ALA G 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 109 O HOH B 123 1.68 REMARK 500 O3' DT D 12 O HOH D 101 1.93 REMARK 500 O HOH H 110 O HOH H 119 1.94 REMARK 500 OP2 DC J 15 O HOH J 101 1.99 REMARK 500 OG1 THR E 285 O HOH E 301 2.04 REMARK 500 O HOH J 121 O HOH C 343 2.10 REMARK 500 OE1 GLN G 246 O HOH G 301 2.16 REMARK 500 OP1 DA J 14 O HOH J 102 2.17 REMARK 500 O4 DT B 12 O HOH B 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC I 23 P DC I 23 OP2 -0.140 REMARK 500 DC J 23 P DC J 23 O5' 0.064 REMARK 500 DG K 24 P DG K 24 O5' 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 2 O3' - P - OP2 ANGL. DEV. = 7.1 DEGREES REMARK 500 DG B 9 O3' - P - OP2 ANGL. DEV. = 7.9 DEGREES REMARK 500 DT B 12 O3' - P - OP2 ANGL. DEV. = 9.6 DEGREES REMARK 500 DA I 14 O3' - P - OP2 ANGL. DEV. = 10.7 DEGREES REMARK 500 DG I 17 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC D 3 O5' - P - OP2 ANGL. DEV. = -7.6 DEGREES REMARK 500 DA J 14 O3' - P - OP2 ANGL. DEV. = 10.8 DEGREES REMARK 500 DA J 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC J 16 C3' - O3' - P ANGL. DEV. = -7.9 DEGREES REMARK 500 DG J 17 O3' - P - OP2 ANGL. DEV. = 10.8 DEGREES REMARK 500 DG J 17 O5' - P - OP2 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG J 22 O3' - P - OP2 ANGL. DEV. = 9.2 DEGREES REMARK 500 DG J 22 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT F 4 O3' - P - OP2 ANGL. DEV. = 8.0 DEGREES REMARK 500 DA F 5 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC F 8 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 DG F 9 O3' - P - OP2 ANGL. DEV. = 9.0 DEGREES REMARK 500 DG F 9 O5' - P - OP2 ANGL. DEV. = -8.6 DEGREES REMARK 500 DA K 14 O3' - P - OP2 ANGL. DEV. = 8.4 DEGREES REMARK 500 DC K 15 O3' - P - OP2 ANGL. DEV. = 8.1 DEGREES REMARK 500 DC K 16 O3' - P - OP2 ANGL. DEV. = 8.9 DEGREES REMARK 500 DC K 16 O5' - P - OP2 ANGL. DEV. = -6.4 DEGREES REMARK 500 DA K 21 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 DA K 21 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC K 23 O3' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DC K 23 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DC H 3 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DC H 3 O5' - P - OP2 ANGL. DEV. = -7.5 DEGREES REMARK 500 DT H 4 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 DA H 6 O3' - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 DC H 8 C3' - O3' - P ANGL. DEV. = -7.9 DEGREES REMARK 500 DG H 9 O3' - P - OP2 ANGL. DEV. = 10.9 DEGREES REMARK 500 DC L 16 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DA L 21 O3' - P - OP2 ANGL. DEV. = 7.1 DEGREES REMARK 500 DG L 22 O3' - P - OP2 ANGL. DEV. = 10.1 DEGREES REMARK 500 DG L 22 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC L 23 O3' - P - OP2 ANGL. DEV. = 13.0 DEGREES REMARK 500 DG L 24 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C 249 CG - CD - NE ANGL. DEV. = -18.0 DEGREES REMARK 500 ARG C 249 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG E 233 CG - CD - NE ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG E 249 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PM5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH DIFFERENT DNA DBREF 8PM7 B 1 12 PDB 8PM7 8PM7 1 12 DBREF 8PM7 I 13 24 PDB 8PM7 8PM7 13 24 DBREF 8PM7 D 1 12 PDB 8PM7 8PM7 1 12 DBREF 8PM7 J 13 24 PDB 8PM7 8PM7 13 24 DBREF 8PM7 F 1 12 PDB 8PM7 8PM7 1 12 DBREF 8PM7 K 13 24 PDB 8PM7 8PM7 13 24 DBREF 8PM7 H 1 12 PDB 8PM7 8PM7 1 12 DBREF 8PM7 L 13 24 PDB 8PM7 8PM7 13 24 DBREF 8PM7 A 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PM7 C 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PM7 E 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PM7 G 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 SEQRES 1 B 12 DC DG DC DT DA DA DT DC DG DG DT DT SEQRES 1 I 12 DA DA DC DC DG DA DT DT DA DG DC DG SEQRES 1 D 12 DC DG DC DT DA DA DT DC DG DG DT DT SEQRES 1 J 12 DA DA DC DC DG DA DT DT DA DG DC DG SEQRES 1 F 12 DC DG DC DT DA DA DT DC DG DG DT DT SEQRES 1 K 12 DA DA DC DC DG DA DT DT DA DG DC DG SEQRES 1 H 12 DC DG DC DT DA DA DT DC DG DG DT DT SEQRES 1 L 12 DA DA DC DC DG DA DT DT DA DG DC DG SEQRES 1 A 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 A 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 A 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 A 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 A 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 C 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 C 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 C 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 C 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 C 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 E 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 E 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 E 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 E 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 E 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 G 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 G 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 G 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 G 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 G 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA FORMUL 13 HOH *452(H2 O) HELIX 1 AA1 SER A 240 GLN A 254 1 15 HELIX 2 AA2 SER A 258 ASN A 270 1 13 HELIX 3 AA3 THR A 272 THR A 291 1 20 HELIX 4 AA4 SER C 240 GLN C 254 1 15 HELIX 5 AA5 SER C 258 ASN C 270 1 13 HELIX 6 AA6 THR C 272 LYS C 288 1 17 HELIX 7 AA7 SER E 240 GLN E 254 1 15 HELIX 8 AA8 SER E 258 ASN E 270 1 13 HELIX 9 AA9 THR E 272 LYS E 288 1 17 HELIX 10 AB1 SER G 240 GLN G 254 1 15 HELIX 11 AB2 SER G 258 ASN G 270 1 13 HELIX 12 AB3 THR G 272 THR G 291 1 20 CRYST1 39.627 123.807 62.713 90.00 93.53 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025235 0.000000 0.001558 0.00000 SCALE2 0.000000 0.008077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015976 0.00000