HEADER TRANSCRIPTION 28-JUN-23 8PMC TITLE TRANSCRIPTION FACTOR BARHL2 BOUND TO TAATT DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: B, D, F, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: I, J, K, L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BARH-LIKE 2 HOMEOBOX PROTEIN; COMPND 11 CHAIN: A, C, E, G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: BARHL2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET20A-SBP KEYWDS HOMEOBOX TRANSCRIPTION FACTOR BARHL2, DNA-BINDING DOMAIN, COMPLEX KEYWDS 2 WITH DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE REVDAT 2 15-JAN-25 8PMC 1 JRNL REVDAT 1 10-JUL-24 8PMC 0 JRNL AUTH E.MORGUNOVA,G.NAGY,Y.YIN,F.ZHU,S.P.NAYAK,T.XIAO,I.SOKOLOV, JRNL AUTH 2 A.POPOV,C.LAUGHTON,H.GRUBMULLER,J.TAIPALE JRNL TITL INTERFACIAL WATER CONFERS TRANSCRIPTION FACTORS WITH JRNL TITL 2 DINUCLEOTIDE SPECIFICITY. JRNL REF NAT.STRUCT.MOL.BIOL. 2025 JRNL REFN ESSN 1545-9985 JRNL PMID 39753777 JRNL DOI 10.1038/S41594-024-01449-6 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3453 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2071 REMARK 3 NUCLEIC ACID ATOMS : 1944 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4432 ; 0.019 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3155 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6213 ; 2.550 ; 1.739 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7289 ; 1.250 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 733 ; 8.829 ; 5.746 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;29.493 ;19.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;17.926 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.186 ; 0.239 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3568 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 946 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 12 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 1 24 D 1 24 2262 0.050 0.050 REMARK 3 2 B 1 24 F 1 24 2231 0.070 0.050 REMARK 3 3 B 1 24 H 1 24 2155 0.100 0.050 REMARK 3 4 D 1 24 F 1 24 2232 0.080 0.050 REMARK 3 5 D 1 24 H 1 24 2144 0.120 0.050 REMARK 3 6 F 1 24 H 1 24 2164 0.100 0.050 REMARK 3 7 A 231 288 C 231 288 1849 0.110 0.050 REMARK 3 8 A 232 290 E 232 290 1883 0.120 0.050 REMARK 3 9 A 232 290 G 232 290 1916 0.120 0.050 REMARK 3 10 C 232 288 E 232 288 1850 0.100 0.050 REMARK 3 11 C 232 288 G 232 288 1885 0.110 0.050 REMARK 3 12 E 232 291 G 232 291 1932 0.140 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9080 5.3275 17.0134 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.1624 REMARK 3 T33: 0.2564 T12: 0.0360 REMARK 3 T13: -0.0471 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 6.1454 L22: 3.5904 REMARK 3 L33: 3.1266 L12: 0.2249 REMARK 3 L13: 1.7504 L23: -0.5841 REMARK 3 S TENSOR REMARK 3 S11: -0.2418 S12: -0.5161 S13: 0.2153 REMARK 3 S21: 0.1664 S22: 0.1595 S23: -0.2888 REMARK 3 S31: -0.1523 S32: 0.1232 S33: 0.0822 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 24 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8725 6.5259 -11.2095 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1316 REMARK 3 T33: 0.2744 T12: -0.0213 REMARK 3 T13: -0.0674 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.0493 L22: 3.0455 REMARK 3 L33: 3.7191 L12: -0.5690 REMARK 3 L13: -1.7173 L23: -0.2517 REMARK 3 S TENSOR REMARK 3 S11: -0.2813 S12: 0.5000 S13: -0.1762 REMARK 3 S21: -0.1488 S22: 0.1497 S23: -0.1949 REMARK 3 S31: 0.1662 S32: 0.1324 S33: 0.1316 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 24 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8311 -24.8389 20.1304 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.2065 REMARK 3 T33: 0.3613 T12: 0.0434 REMARK 3 T13: -0.1409 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.7448 L22: 4.7965 REMARK 3 L33: 6.6747 L12: -1.7569 REMARK 3 L13: -1.4656 L23: 1.7107 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.2170 S13: 0.2446 REMARK 3 S21: -0.0377 S22: 0.1898 S23: -0.4519 REMARK 3 S31: -0.0400 S32: 0.3453 S33: -0.2262 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 24 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5311 -27.9635 -11.6042 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1080 REMARK 3 T33: 0.2796 T12: 0.0144 REMARK 3 T13: -0.1632 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.7850 L22: 5.5726 REMARK 3 L33: 4.2451 L12: 0.1048 REMARK 3 L13: 1.1657 L23: -2.0885 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.1959 S13: -0.1234 REMARK 3 S21: -0.3942 S22: -0.1302 S23: -0.1025 REMARK 3 S31: 0.4154 S32: -0.0945 S33: 0.1292 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3383 -4.0643 8.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0358 REMARK 3 T33: 0.2149 T12: -0.0047 REMARK 3 T13: -0.0634 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.9149 L22: 5.6047 REMARK 3 L33: 4.0533 L12: -1.9331 REMARK 3 L13: 0.5012 L23: 0.3580 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: -0.0580 S13: -0.0517 REMARK 3 S21: -0.2311 S22: 0.0560 S23: -0.1889 REMARK 3 S31: 0.0275 S32: -0.0396 S33: -0.1427 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 231 C 289 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5785 16.0078 -2.0682 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0411 REMARK 3 T33: 0.2891 T12: -0.0114 REMARK 3 T13: -0.0899 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 3.8599 L22: 4.5512 REMARK 3 L33: 4.6848 L12: 0.2784 REMARK 3 L13: -0.2017 L23: 0.7071 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: 0.0210 S13: 0.0623 REMARK 3 S21: -0.0334 S22: 0.0849 S23: -0.2503 REMARK 3 S31: -0.1166 S32: 0.2797 S33: -0.0413 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 232 E 291 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2782 -28.1536 14.8235 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0992 REMARK 3 T33: 0.2904 T12: 0.0045 REMARK 3 T13: -0.1473 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.8953 L22: 6.7036 REMARK 3 L33: 3.4455 L12: -1.5295 REMARK 3 L13: -0.2621 L23: 0.9628 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: -0.1385 S13: -0.2383 REMARK 3 S21: -0.0063 S22: 0.0890 S23: 0.1423 REMARK 3 S31: 0.1378 S32: -0.0214 S33: -0.0202 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 232 G 291 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5129 -15.8845 -15.9144 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.1144 REMARK 3 T33: 0.2499 T12: 0.0818 REMARK 3 T13: -0.1287 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 3.8691 L22: 4.9343 REMARK 3 L33: 7.2919 L12: -0.6199 REMARK 3 L13: 0.7070 L23: -1.1132 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: 0.3085 S13: 0.1194 REMARK 3 S21: -0.3562 S22: -0.1154 S23: -0.1198 REMARK 3 S31: -0.1900 S32: 0.0438 S33: 0.0057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8PMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 3.01900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM MALONATE, SODIUM REMARK 280 ACETATE, PH 4.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.57400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, I, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, K, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN C 290 REMARK 465 THR C 291 REMARK 465 ALA C 292 REMARK 465 LYS E 231 REMARK 465 ALA E 292 REMARK 465 LYS G 231 REMARK 465 ALA G 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 114 O HOH A 302 1.57 REMARK 500 O HOH D 110 O HOH D 120 1.69 REMARK 500 O HOH B 103 O HOH B 116 1.80 REMARK 500 O HOH H 109 O HOH H 112 1.95 REMARK 500 O HOH B 116 O HOH A 343 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DC F 1 OP2 DG L 24 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC I 23 O3' DC I 23 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 2 OP1 - P - OP2 ANGL. DEV. = 11.0 DEGREES REMARK 500 DG B 2 O5' - P - OP2 ANGL. DEV. = -8.6 DEGREES REMARK 500 DG B 9 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC B 10 OP1 - P - OP2 ANGL. DEV. = 10.6 DEGREES REMARK 500 DG I 15 O3' - P - OP2 ANGL. DEV. = 11.9 DEGREES REMARK 500 DC I 16 O5' - P - OP2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC I 16 C3' - O3' - P ANGL. DEV. = -10.5 DEGREES REMARK 500 DG I 22 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC I 23 OP1 - P - OP2 ANGL. DEV. = 15.5 DEGREES REMARK 500 DA J 14 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 DG J 15 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 DA J 17 OP1 - P - OP2 ANGL. DEV. = 16.8 DEGREES REMARK 500 DA J 17 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT F 4 O3' - P - OP2 ANGL. DEV. = 8.1 DEGREES REMARK 500 DT F 4 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT F 4 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA F 5 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG K 15 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DC K 16 C3' - O3' - P ANGL. DEV. = -7.6 DEGREES REMARK 500 DA K 21 OP1 - P - OP2 ANGL. DEV. = 12.2 DEGREES REMARK 500 DA K 21 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC K 23 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC H 1 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC H 1 C3' - O3' - P ANGL. DEV. = 25.4 DEGREES REMARK 500 DG H 2 OP1 - P - OP2 ANGL. DEV. = -11.8 DEGREES REMARK 500 DT H 4 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT H 4 OP1 - P - OP2 ANGL. DEV. = 11.7 DEGREES REMARK 500 DG H 9 OP1 - P - OP2 ANGL. DEV. = 10.3 DEGREES REMARK 500 DG H 9 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DA L 14 OP1 - P - OP2 ANGL. DEV. = 15.4 DEGREES REMARK 500 DA L 14 O5' - P - OP2 ANGL. DEV. = -7.4 DEGREES REMARK 500 DA L 14 C3' - O3' - P ANGL. DEV. = -9.2 DEGREES REMARK 500 DC L 16 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 DA L 17 OP1 - P - OP2 ANGL. DEV. = 11.2 DEGREES REMARK 500 DA L 17 O5' - P - OP2 ANGL. DEV. = -6.6 DEGREES REMARK 500 DT L 19 OP1 - P - OP2 ANGL. DEV. = 11.8 DEGREES REMARK 500 DA L 21 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG L 24 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 ARG C 253 CG - CD - NE ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG C 253 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN E 290 102.05 93.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PM7 RELATED DB: PDB REMARK 900 PROTEIN SAME PROTEIN CRYSTALLISED WITH DIFFERENT DNAS DBREF 8PMC B 1 12 PDB 8PMC 8PMC 1 12 DBREF 8PMC I 13 24 PDB 8PMC 8PMC 13 24 DBREF 8PMC D 1 12 PDB 8PMC 8PMC 1 12 DBREF 8PMC J 13 24 PDB 8PMC 8PMC 13 24 DBREF 8PMC F 1 12 PDB 8PMC 8PMC 1 12 DBREF 8PMC K 13 24 PDB 8PMC 8PMC 13 24 DBREF 8PMC H 1 12 PDB 8PMC 8PMC 1 12 DBREF 8PMC L 13 24 PDB 8PMC 8PMC 13 24 DBREF 8PMC A 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMC C 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMC E 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 DBREF 8PMC G 231 292 UNP Q9NY43 BARH2_HUMAN 231 292 SEQRES 1 B 12 DC DG DC DT DA DA DT DT DG DC DT DC SEQRES 1 I 12 DG DA DG DC DA DA DT DT DA DG DC DG SEQRES 1 D 12 DC DG DC DT DA DA DT DT DG DC DT DC SEQRES 1 J 12 DG DA DG DC DA DA DT DT DA DG DC DG SEQRES 1 F 12 DC DG DC DT DA DA DT DT DG DC DT DC SEQRES 1 K 12 DG DA DG DC DA DA DT DT DA DG DC DG SEQRES 1 H 12 DC DG DC DT DA DA DT DT DG DC DT DC SEQRES 1 L 12 DG DA DG DC DA DA DT DT DA DG DC DG SEQRES 1 A 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 A 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 A 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 A 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 A 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 C 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 C 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 C 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 C 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 C 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 E 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 E 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 E 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 E 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 E 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 1 G 62 LYS PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN SEQRES 2 G 62 LEU ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR SEQRES 3 G 62 LEU SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU SEQRES 4 G 62 ASN LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN SEQRES 5 G 62 ARG ARG THR LYS TRP LYS ARG GLN THR ALA FORMUL 13 HOH *315(H2 O) HELIX 1 AA1 SER A 240 GLN A 254 1 15 HELIX 2 AA2 SER A 258 LEU A 269 1 12 HELIX 3 AA3 THR A 272 ALA A 292 1 21 HELIX 4 AA4 SER C 240 GLN C 254 1 15 HELIX 5 AA5 SER C 258 LEU C 269 1 12 HELIX 6 AA6 THR C 272 LYS C 288 1 17 HELIX 7 AA7 SER E 240 GLN E 254 1 15 HELIX 8 AA8 SER E 258 ASN E 270 1 13 HELIX 9 AA9 THR E 272 LYS E 288 1 17 HELIX 10 AB1 SER G 240 GLN G 254 1 15 HELIX 11 AB2 SER G 258 ASN G 270 1 13 HELIX 12 AB3 THR G 272 GLN G 290 1 19 CRYST1 39.595 123.148 62.198 90.00 94.24 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025256 0.000000 0.001871 0.00000 SCALE2 0.000000 0.008120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016122 0.00000