HEADER TRANSCRIPTION 28-JUN-23 8PMF TITLE TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BARH-LIKE 2 HOMEOBOX PROTEIN; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: BARHL2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET20A-SBP KEYWDS HOMEOBOX TRANSCRIPTION FACTOR BARHL2, DNA-BINDING DOMAIN, COMPLEX KEYWDS 2 WITH DNA, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE REVDAT 1 10-JUL-24 8PMF 0 JRNL AUTH E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE JRNL TITL TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 79687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4110 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 563 REMARK 3 NUCLEIC ACID ATOMS : 485 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1630 ; 0.017 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1118 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2396 ; 2.917 ; 1.754 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2597 ; 1.274 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 88 ; 6.868 ; 4.998 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;25.180 ;19.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 130 ;14.300 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.200 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1276 ; 0.025 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 335 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2744 ; 5.230 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8PMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.61992 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84114 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 3.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM MALONATE, SODIUM REMARK 280 ACETATE, PH 4.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.42850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.27850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.64300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.27850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.42850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.64300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA D 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 385 O HOH A 394 1.09 REMARK 500 O HOH A 304 O HOH A 350 1.17 REMARK 500 O HOH A 342 O HOH A 390 1.19 REMARK 500 O HOH D 152 O HOH D 168 1.24 REMARK 500 O HOH D 169 O HOH D 171 1.25 REMARK 500 O HOH B 131 O HOH B 132 1.26 REMARK 500 O HOH D 153 O HOH D 162 1.27 REMARK 500 O HOH A 348 O HOH A 452 1.30 REMARK 500 O HOH A 389 O HOH A 396 1.32 REMARK 500 O HOH D 123 O HOH D 138 1.33 REMARK 500 O HOH D 114 O HOH D 127 1.37 REMARK 500 O HOH A 327 O HOH A 376 1.42 REMARK 500 O HOH A 319 O HOH A 407 1.43 REMARK 500 O HOH D 160 O HOH D 163 1.44 REMARK 500 OE1 GLN A 290 O HOH A 301 1.45 REMARK 500 O HOH D 112 O HOH D 148 1.45 REMARK 500 O HOH D 151 O HOH D 170 1.51 REMARK 500 O HOH B 134 O HOH B 170 1.52 REMARK 500 O HOH D 174 O HOH D 196 1.53 REMARK 500 NE2 GLN A 290 O HOH A 301 1.54 REMARK 500 O HOH B 176 O HOH B 179 1.61 REMARK 500 O HOH B 150 O HOH B 158 1.61 REMARK 500 CD GLN A 290 O HOH A 301 1.63 REMARK 500 O HOH B 112 O HOH B 137 1.71 REMARK 500 O HOH A 306 O HOH A 404 1.72 REMARK 500 O HOH B 177 O HOH A 443 1.73 REMARK 500 OE1 GLN A 290 O HOH A 302 1.74 REMARK 500 O HOH A 419 O HOH A 422 1.76 REMARK 500 O HOH B 144 O HOH B 173 1.82 REMARK 500 O HOH D 135 O HOH A 361 1.82 REMARK 500 O HOH A 308 O HOH A 441 1.82 REMARK 500 O HOH A 361 O HOH A 373 1.84 REMARK 500 O HOH B 131 O HOH B 179 1.85 REMARK 500 O HOH A 475 O HOH A 480 1.86 REMARK 500 O HOH D 180 O HOH D 181 1.88 REMARK 500 O HOH D 151 O HOH D 166 1.91 REMARK 500 O HOH A 413 O HOH A 419 1.92 REMARK 500 O HOH D 122 O HOH D 132 1.93 REMARK 500 O HOH B 168 O HOH B 174 1.95 REMARK 500 O HOH D 115 O HOH D 175 1.95 REMARK 500 O HOH D 103 O HOH D 139 1.96 REMARK 500 OP2 DG B 9 O HOH B 101 2.01 REMARK 500 O HOH D 114 O HOH D 126 2.01 REMARK 500 OP1 DA D 9 O HOH D 101 2.02 REMARK 500 O HOH A 304 O HOH A 437 2.02 REMARK 500 O HOH D 233 O HOH D 239 2.03 REMARK 500 O HOH B 107 O HOH B 138 2.04 REMARK 500 O HOH D 111 O HOH D 221 2.05 REMARK 500 C5' DA D 1 O HOH D 212 2.05 REMARK 500 O HOH B 165 O HOH B 178 2.06 REMARK 500 REMARK 500 THIS ENTRY HAS 74 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 383 O HOH A 488 4555 1.14 REMARK 500 O HOH D 166 O HOH D 203 1655 1.21 REMARK 500 O HOH D 110 O HOH A 362 2454 1.32 REMARK 500 OXT VAL A 293 O HOH D 193 4545 1.76 REMARK 500 OP1 DT D 7 O HOH A 376 2454 1.77 REMARK 500 O HOH D 191 O HOH A 306 4545 1.95 REMARK 500 O HOH D 107 O HOH D 224 1655 1.95 REMARK 500 O HOH D 198 O HOH A 302 4445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 3 O3' DC B 3 C3' -0.070 REMARK 500 DC B 3 O3' DC B 3 C3' 0.109 REMARK 500 DT B 4 C1' DT B 4 N1 -0.108 REMARK 500 DA B 6 O3' DA B 7 P 0.077 REMARK 500 DA B 7 O3' DA B 7 C3' -0.039 REMARK 500 DA D 2 O5' DA D 2 C5' 0.114 REMARK 500 ASP A 241 CG ASP A 241 OD2 0.139 REMARK 500 VAL A 293 C VAL A 293 OXT 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG B 2 O5' - C5' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC B 3 C3' - O3' - P ANGL. DEV. = -7.3 DEGREES REMARK 500 DC B 3 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DT B 4 O3' - P - OP2 ANGL. DEV. = 8.1 DEGREES REMARK 500 DT B 4 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT B 4 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT B 4 O4' - C1' - C2' ANGL. DEV. = 3.5 DEGREES REMARK 500 DT B 4 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT B 4 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT B 4 C6 - N1 - C2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT B 4 C6 - N1 - C2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT B 4 C5 - C6 - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT B 4 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA B 5 O3' - P - OP2 ANGL. DEV. = 8.7 DEGREES REMARK 500 DA B 5 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DA B 6 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DA B 7 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG B 9 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG B 9 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG B 9 C3' - O3' - P ANGL. DEV. = 12.9 DEGREES REMARK 500 DG B 10 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 10 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG B 10 C2 - N3 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG B 10 N3 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG B 10 C4 - C5 - N7 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG B 10 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG B 10 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 10 N1 - C6 - O6 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT B 11 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT B 11 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT B 12 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 DA D 2 O5' - P - OP2 ANGL. DEV. = -7.7 DEGREES REMARK 500 DG D 5 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT D 6 O3' - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DT D 6 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DT D 7 O5' - P - OP2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 249 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 MET A 263 CG - SD - CE ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC B 1 0.06 SIDE CHAIN REMARK 500 DT B 4 0.07 SIDE CHAIN REMARK 500 DC D 4 0.09 SIDE CHAIN REMARK 500 DT D 7 0.06 SIDE CHAIN REMARK 500 DG D 10 0.06 SIDE CHAIN REMARK 500 DG D 12 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 194 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH D 238 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH D 239 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH D 240 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH D 241 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH D 242 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH D 243 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH D 244 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH D 245 DISTANCE = 8.34 ANGSTROMS REMARK 525 HOH A 489 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 490 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 491 DISTANCE = 8.26 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PM5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA DBREF 8PMF B 1 12 PDB 8PMF 8PMF 1 12 DBREF 8PMF D 1 12 PDB 8PMF 8PMF 1 12 DBREF 8PMF A 228 293 UNP Q9NY43 BARH2_HUMAN 228 293 SEQRES 1 B 12 DC DG DC DT DA DA DA DC DG DG DT DT SEQRES 1 D 12 DA DA DC DC DG DT DT DT DA DG DC DG SEQRES 1 A 66 ARG ALA LYS LYS PRO ARG LYS ALA ARG THR ALA PHE SER SEQRES 2 A 66 ASP HIS GLN LEU ASN GLN LEU GLU ARG SER PHE GLU ARG SEQRES 3 A 66 GLN LYS TYR LEU SER VAL GLN ASP ARG MET ASP LEU ALA SEQRES 4 A 66 ALA ALA LEU ASN LEU THR ASP THR GLN VAL LYS THR TRP SEQRES 5 A 66 TYR GLN ASN ARG ARG THR LYS TRP LYS ARG GLN THR ALA SEQRES 6 A 66 VAL FORMUL 4 HOH *428(H2 O) HELIX 1 AA1 SER A 240 GLN A 254 1 15 HELIX 2 AA2 SER A 258 ASN A 270 1 13 HELIX 3 AA3 THR A 272 ALA A 292 1 21 CRYST1 38.857 47.286 72.557 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013782 0.00000