HEADER LYASE 29-JUN-23 8PMU TITLE CRYSTAL STRUCTURE OF THE HC7 APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF3472 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: GE376_31780; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MUCINASE, GLYCOPROTEASE, CLUSTER OF O-GLYCANS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.TALEB,R.HURTADO-GUERRERO REVDAT 1 06-MAR-24 8PMU 0 JRNL AUTH Y.NARIMATSU,C.BULL,V.TALEB,Q.LIAO,I.COMPANON, JRNL AUTH 2 D.SANCHEZ-NAVARRO,F.DURBESSON,R.VINCENTELLI,L.HANSEN, JRNL AUTH 3 F.CORZANA,C.ROVIRA,B.HENRISSAT,H.CLAUSEN,H.J.JOSHI, JRNL AUTH 4 R.HURTADO-GUERRERO JRNL TITL A FAMILY OF DI-GLUTAMATE MUCIN-DEGRADING ENZYMES THAT JRNL TITL 2 BRIDGES GLYCAN HYDROLASES AND PEPTIDASES JRNL REF NAT CATAL 2024 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-024-01116-5 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 35169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1423 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2789 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2810 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2533 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3817 ; 1.932 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5843 ; 1.099 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 7.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;38.772 ;25.674 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;14.483 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.164 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3260 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 685 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1359 ; 2.536 ; 2.776 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1358 ; 2.523 ; 2.773 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1697 ; 3.457 ; 4.150 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1698 ; 3.460 ; 4.154 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 3.766 ; 3.179 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1450 ; 3.766 ; 3.179 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2121 ; 5.734 ; 4.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3351 ; 7.546 ;23.722 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3296 ; 7.541 ;23.581 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1292131578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36731 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 93.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM CHLORIDE TRIS PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.64350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.92700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.92700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.82175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.92700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.92700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.46525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.92700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.92700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.82175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.92700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.92700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.46525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.64350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 VAL A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 ILE A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ILE A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 THR A 21 REMARK 465 VAL A 22 REMARK 465 PHE A 23 REMARK 465 SER A 24 REMARK 465 MET A 25 REMARK 465 PHE A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 ILE A 30 REMARK 465 SER A 31 REMARK 465 ILE A 32 REMARK 465 ILE A 33 REMARK 465 GLU A 34 REMARK 465 ALA A 35 REMARK 465 ALA A 36 REMARK 465 SER A 377 REMARK 465 PRO A 378 REMARK 465 ASN A 379 REMARK 465 ILE A 380 REMARK 465 LEU A 381 REMARK 465 GLU A 382 REMARK 465 GLY A 383 REMARK 465 ASP A 384 REMARK 465 ARG A 385 REMARK 465 PHE A 386 REMARK 465 ALA A 387 REMARK 465 TRP A 388 REMARK 465 SER A 389 REMARK 465 MET A 390 REMARK 465 LYS A 391 REMARK 465 GLY A 392 REMARK 465 ILE A 393 REMARK 465 GLY A 394 REMARK 465 ASP A 395 REMARK 465 PHE A 396 REMARK 465 GLU A 397 REMARK 465 PHE A 398 REMARK 465 ALA A 399 REMARK 465 LYS A 400 REMARK 465 LEU A 401 REMARK 465 ASP A 402 REMARK 465 LEU A 403 REMARK 465 ASN A 404 REMARK 465 LYS A 405 REMARK 465 SER A 406 REMARK 465 THR A 407 REMARK 465 GLU A 408 REMARK 465 GLU A 409 REMARK 465 LEU A 410 REMARK 465 GLN A 411 REMARK 465 VAL A 412 REMARK 465 SER A 413 REMARK 465 LEU A 414 REMARK 465 ILE A 415 REMARK 465 ALA A 416 REMARK 465 GLY A 417 REMARK 465 THR A 418 REMARK 465 PRO A 419 REMARK 465 HIS A 420 REMARK 465 ASN A 421 REMARK 465 TYR A 422 REMARK 465 PHE A 423 REMARK 465 ASP A 424 REMARK 465 SER A 425 REMARK 465 THR A 426 REMARK 465 TYR A 427 REMARK 465 ALA A 428 REMARK 465 SER A 429 REMARK 465 ILE A 430 REMARK 465 LYS A 431 REMARK 465 VAL A 432 REMARK 465 GLN A 433 REMARK 465 ASP A 434 REMARK 465 THR A 435 REMARK 465 SER A 436 REMARK 465 GLY A 437 REMARK 465 LYS A 438 REMARK 465 VAL A 439 REMARK 465 VAL A 440 REMARK 465 TYR A 441 REMARK 465 ASN A 442 REMARK 465 LYS A 443 REMARK 465 GLU A 444 REMARK 465 ILE A 445 REMARK 465 TYR A 446 REMARK 465 GLY A 447 REMARK 465 ASN A 448 REMARK 465 THR A 449 REMARK 465 GLN A 450 REMARK 465 GLN A 451 REMARK 465 ASN A 452 REMARK 465 ALA A 453 REMARK 465 GLU A 454 REMARK 465 SER A 455 REMARK 465 LYS A 456 REMARK 465 THR A 457 REMARK 465 VAL A 458 REMARK 465 PRO A 459 REMARK 465 VAL A 460 REMARK 465 LYS A 461 REMARK 465 VAL A 462 REMARK 465 GLY A 463 REMARK 465 ASN A 464 REMARK 465 PHE A 465 REMARK 465 ILE A 466 REMARK 465 GLU A 467 REMARK 465 LEU A 468 REMARK 465 THR A 469 REMARK 465 HIS A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 GLU A 475 REMARK 465 ARG A 476 REMARK 465 ALA A 477 REMARK 465 THR A 478 REMARK 465 LEU A 479 REMARK 465 THR A 480 REMARK 465 ASN A 481 REMARK 465 LEU A 482 REMARK 465 ASP A 483 REMARK 465 ASN A 484 REMARK 465 ASN A 485 REMARK 465 LYS A 486 REMARK 465 ARG A 487 REMARK 465 GLU A 488 REMARK 465 SER A 489 REMARK 465 PHE A 490 REMARK 465 ASP A 491 REMARK 465 LYS A 492 REMARK 465 LYS A 493 REMARK 465 VAL A 494 REMARK 465 ILE A 495 REMARK 465 TYR A 496 REMARK 465 GLU A 497 REMARK 465 VAL A 498 REMARK 465 THR A 499 REMARK 465 LYS A 500 REMARK 465 ASP A 501 REMARK 465 GLY A 502 REMARK 465 LEU A 503 REMARK 465 LYS A 504 REMARK 465 LYS A 505 REMARK 465 ILE A 506 REMARK 465 ASN A 507 REMARK 465 GLN A 508 REMARK 465 ILE A 509 REMARK 465 VAL A 510 REMARK 465 ASN A 511 REMARK 465 PRO A 512 REMARK 465 LYS A 513 REMARK 465 PRO A 514 REMARK 465 ASP A 515 REMARK 465 THR A 516 REMARK 465 GLU A 517 REMARK 465 ALA A 518 REMARK 465 PRO A 519 REMARK 465 THR A 520 REMARK 465 GLN A 521 REMARK 465 PRO A 522 REMARK 465 GLN A 523 REMARK 465 GLY A 524 REMARK 465 LEU A 525 REMARK 465 TYR A 526 REMARK 465 ALA A 527 REMARK 465 SER A 528 REMARK 465 ASN A 529 REMARK 465 VAL A 530 REMARK 465 ALA A 531 REMARK 465 SER A 532 REMARK 465 ASP A 533 REMARK 465 SER A 534 REMARK 465 VAL A 535 REMARK 465 GLU A 536 REMARK 465 LEU A 537 REMARK 465 LYS A 538 REMARK 465 TRP A 539 REMARK 465 ASN A 540 REMARK 465 PRO A 541 REMARK 465 SER A 542 REMARK 465 THR A 543 REMARK 465 ASP A 544 REMARK 465 ASN A 545 REMARK 465 VAL A 546 REMARK 465 GLY A 547 REMARK 465 VAL A 548 REMARK 465 LYS A 549 REMARK 465 GLU A 550 REMARK 465 TYR A 551 REMARK 465 GLN A 552 REMARK 465 VAL A 553 REMARK 465 LEU A 554 REMARK 465 ARG A 555 REMARK 465 ASP A 556 REMARK 465 GLY A 557 REMARK 465 GLN A 558 REMARK 465 LEU A 559 REMARK 465 ILE A 560 REMARK 465 GLN A 561 REMARK 465 THR A 562 REMARK 465 VAL A 563 REMARK 465 GLN A 564 REMARK 465 GLU A 565 REMARK 465 THR A 566 REMARK 465 LYS A 567 REMARK 465 VAL A 568 REMARK 465 THR A 569 REMARK 465 ASP A 570 REMARK 465 GLN A 571 REMARK 465 ASN A 572 REMARK 465 LEU A 573 REMARK 465 THR A 574 REMARK 465 ALA A 575 REMARK 465 ASN A 576 REMARK 465 LYS A 577 REMARK 465 GLU A 578 REMARK 465 TYR A 579 REMARK 465 LYS A 580 REMARK 465 TYR A 581 REMARK 465 THR A 582 REMARK 465 VAL A 583 REMARK 465 LYS A 584 REMARK 465 ALA A 585 REMARK 465 VAL A 586 REMARK 465 ASP A 587 REMARK 465 THR A 588 REMARK 465 ALA A 589 REMARK 465 GLY A 590 REMARK 465 ASN A 591 REMARK 465 ILE A 592 REMARK 465 SER A 593 REMARK 465 VAL A 594 REMARK 465 GLN A 595 REMARK 465 SER A 596 REMARK 465 ASN A 597 REMARK 465 ILE A 598 REMARK 465 LEU A 599 REMARK 465 THR A 600 REMARK 465 VAL A 601 REMARK 465 THR A 602 REMARK 465 THR A 603 REMARK 465 LYS A 604 REMARK 465 SER A 605 REMARK 465 GLN A 606 REMARK 465 ASN A 607 REMARK 465 VAL A 608 REMARK 465 THR A 609 REMARK 465 TYR A 610 REMARK 465 GLU A 611 REMARK 465 LYS A 612 REMARK 465 TRP A 613 REMARK 465 ASP A 614 REMARK 465 PRO A 615 REMARK 465 LYS A 616 REMARK 465 LYS A 617 REMARK 465 ALA A 618 REMARK 465 TYR A 619 REMARK 465 THR A 620 REMARK 465 LYS A 621 REMARK 465 GLY A 622 REMARK 465 ASP A 623 REMARK 465 LYS A 624 REMARK 465 VAL A 625 REMARK 465 GLU A 626 REMARK 465 TYR A 627 REMARK 465 GLN A 628 REMARK 465 GLY A 629 REMARK 465 LYS A 630 REMARK 465 PHE A 631 REMARK 465 TYR A 632 REMARK 465 GLU A 633 REMARK 465 ALA A 634 REMARK 465 VAL A 635 REMARK 465 GLN A 636 REMARK 465 SER A 637 REMARK 465 TYR A 638 REMARK 465 GLN A 639 REMARK 465 GLY A 640 REMARK 465 ASN A 641 REMARK 465 GLY A 642 REMARK 465 ASP A 643 REMARK 465 PRO A 644 REMARK 465 THR A 645 REMARK 465 TRP A 646 REMARK 465 ILE A 647 REMARK 465 PHE A 648 REMARK 465 ALA A 649 REMARK 465 LEU A 650 REMARK 465 SER A 651 REMARK 465 LEU A 652 REMARK 465 TRP A 653 REMARK 465 GLN A 654 REMARK 465 PRO A 655 REMARK 465 PHE A 656 REMARK 465 LYS A 657 REMARK 465 LEU A 658 REMARK 465 ILE A 659 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 89 -111.29 -88.42 REMARK 500 PHE A 102 117.46 -161.95 REMARK 500 PRO A 185 41.65 -83.45 REMARK 500 ASN A 188 30.86 70.97 REMARK 500 THR A 190 -169.98 -126.71 REMARK 500 ASN A 205 63.51 -104.13 REMARK 500 ASN A 244 48.90 -85.64 REMARK 500 THR A 292 86.96 -157.41 REMARK 500 GLU A 295 127.53 -175.18 REMARK 500 ASN A 375 53.39 -117.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 8PMU A 1 659 PDB 8PMU 8PMU 1 659 SEQRES 1 A 659 MET PHE ASN GLN ARG THR LYS ASN GLY VAL LYS LYS ILE SEQRES 2 A 659 LEU ALA ILE THR ALA ALA SER THR VAL PHE SER MET PHE SEQRES 3 A 659 GLY SER SER ILE SER ILE ILE GLU ALA ALA SER ALA PRO SEQRES 4 A 659 GLY VAL TYR VAL THR PRO LYS ASN SER VAL SER SER ASP SEQRES 5 A 659 ILE ILE SER ILE ASP TRP SER PRO VAL GLN THR ALA PRO SEQRES 6 A 659 TYR THR TYR TRP ALA VAL HIS ASN TRP ASN GLN GLY GLY SEQRES 7 A 659 GLU ALA GLY GLY TYR ALA GLY PHE GLN GLN GLN SER GLY SEQRES 8 A 659 PHE ASP GLU ASN GLY LYS ARG THR LEU HIS PHE ALA VAL SEQRES 9 A 659 TRP ASP PRO ILE SER SER LYS GLU ALA ILE LYS ALA GLU SEQRES 10 A 659 TYR VAL SER PRO THR SER VAL ALA SER ASN PHE GLY GLY SEQRES 11 A 659 GLU GLY THR GLY LEU LYS ILE GLN THR THR TYR ASP TRP SEQRES 12 A 659 LYS ASN TYR ASN TRP TYR ARG MET THR MET ARG SER TRP SEQRES 13 A 659 GLN GLU ASN GLY HIS THR LYS PHE GLY GLN TRP LEU LYS SEQRES 14 A 659 ASP VAL SER LYS ASN GLN TRP LYS LEU ILE GLY ILE MET SEQRES 15 A 659 ASP PHE PRO VAL PRO ASN VAL THR PHE ASN TYR GLY GLN SEQRES 16 A 659 THR LEU PHE GLN GLU ASP TRP LEU GLY ASN GLY GLN ASP SEQRES 17 A 659 VAL ARG GLU ALA ARG VAL LYS ASN GLY TYR GLY ARG ASN SEQRES 18 A 659 ILE SER ASP LYS LYS TRP THR SER TRP ASN THR GLN SER SEQRES 19 A 659 ILE GLU GLY GLN GLU PRO LEU ASN ASN ASN TRP ASP GLY SEQRES 20 A 659 GLY ALA THR SER GLU TYR LEU TRP PHE LYS ALA GLY GLY SEQRES 21 A 659 ASP SER ARG SER THR ILE GLY THR GLY LYS THR PHE THR SEQRES 22 A 659 LEU ASN GLN PRO SER GLN PRO GLU ILE GLY LYS LEU ASP SEQRES 23 A 659 TYR ASP VAL LYS SER THR TYR TYR GLU ASN GLU LYS LEU SEQRES 24 A 659 ASN ILE THR TRP GLN LEU LYS ASP SER SER THR PRO GLN SEQRES 25 A 659 PHE LYS GLY LYS ILE GLU ILE TYR ASN ASN GLU ASN MET SEQRES 26 A 659 THR GLY GLN PRO ILE ASN VAL ILE ASN ASP ILE LYS SER SEQRES 27 A 659 TYR GLN ASN GLY ILE SER GLN SER ILE SER LEU PRO THR SEQRES 28 A 659 ASN THR TYR ALA LYS ILE VAL LEU THR ASP ILE PHE ASP SEQRES 29 A 659 GLN THR VAL GLU LYS LYS VAL LYS ILE LYS ASN GLU SER SEQRES 30 A 659 PRO ASN ILE LEU GLU GLY ASP ARG PHE ALA TRP SER MET SEQRES 31 A 659 LYS GLY ILE GLY ASP PHE GLU PHE ALA LYS LEU ASP LEU SEQRES 32 A 659 ASN LYS SER THR GLU GLU LEU GLN VAL SER LEU ILE ALA SEQRES 33 A 659 GLY THR PRO HIS ASN TYR PHE ASP SER THR TYR ALA SER SEQRES 34 A 659 ILE LYS VAL GLN ASP THR SER GLY LYS VAL VAL TYR ASN SEQRES 35 A 659 LYS GLU ILE TYR GLY ASN THR GLN GLN ASN ALA GLU SER SEQRES 36 A 659 LYS THR VAL PRO VAL LYS VAL GLY ASN PHE ILE GLU LEU SEQRES 37 A 659 THR HIS LEU GLU GLY GLY GLU ARG ALA THR LEU THR ASN SEQRES 38 A 659 LEU ASP ASN ASN LYS ARG GLU SER PHE ASP LYS LYS VAL SEQRES 39 A 659 ILE TYR GLU VAL THR LYS ASP GLY LEU LYS LYS ILE ASN SEQRES 40 A 659 GLN ILE VAL ASN PRO LYS PRO ASP THR GLU ALA PRO THR SEQRES 41 A 659 GLN PRO GLN GLY LEU TYR ALA SER ASN VAL ALA SER ASP SEQRES 42 A 659 SER VAL GLU LEU LYS TRP ASN PRO SER THR ASP ASN VAL SEQRES 43 A 659 GLY VAL LYS GLU TYR GLN VAL LEU ARG ASP GLY GLN LEU SEQRES 44 A 659 ILE GLN THR VAL GLN GLU THR LYS VAL THR ASP GLN ASN SEQRES 45 A 659 LEU THR ALA ASN LYS GLU TYR LYS TYR THR VAL LYS ALA SEQRES 46 A 659 VAL ASP THR ALA GLY ASN ILE SER VAL GLN SER ASN ILE SEQRES 47 A 659 LEU THR VAL THR THR LYS SER GLN ASN VAL THR TYR GLU SEQRES 48 A 659 LYS TRP ASP PRO LYS LYS ALA TYR THR LYS GLY ASP LYS SEQRES 49 A 659 VAL GLU TYR GLN GLY LYS PHE TYR GLU ALA VAL GLN SER SEQRES 50 A 659 TYR GLN GLY ASN GLY ASP PRO THR TRP ILE PHE ALA LEU SEQRES 51 A 659 SER LEU TRP GLN PRO PHE LYS LEU ILE HET GOL A 701 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *168(H2 O) SHEET 1 AA1 9 SER A 123 PHE A 128 0 SHEET 2 AA1 9 GLY A 134 THR A 140 -1 O GLN A 138 N VAL A 124 SHEET 3 AA1 9 ARG A 98 VAL A 104 -1 N PHE A 102 O ILE A 137 SHEET 4 AA1 9 GLY A 82 GLN A 88 -1 N TYR A 83 O ALA A 103 SHEET 5 AA1 9 THR A 67 TRP A 74 -1 N TRP A 69 O PHE A 86 SHEET 6 AA1 9 LEU A 197 ASP A 201 -1 O PHE A 198 N ALA A 70 SHEET 7 AA1 9 VAL A 41 PRO A 45 -1 N VAL A 43 O LEU A 197 SHEET 8 AA1 9 THR A 232 GLY A 237 -1 O GLU A 236 N TYR A 42 SHEET 9 AA1 9 GLY A 269 THR A 273 -1 O LYS A 270 N ILE A 235 SHEET 1 AA2 7 LYS A 115 VAL A 119 0 SHEET 2 AA2 7 GLN A 175 PHE A 184 -1 O ASP A 183 N LYS A 115 SHEET 3 AA2 7 HIS A 161 ASP A 170 -1 N PHE A 164 O MET A 182 SHEET 4 AA2 7 TYR A 149 GLU A 158 -1 N TRP A 156 O LYS A 163 SHEET 5 AA2 7 SER A 51 THR A 63 -1 N ILE A 56 O MET A 151 SHEET 6 AA2 7 ARG A 210 ASN A 221 -1 O ARG A 220 N ILE A 53 SHEET 7 AA2 7 TRP A 227 SER A 229 -1 O THR A 228 N GLY A 219 SHEET 1 AA3 8 LYS A 115 VAL A 119 0 SHEET 2 AA3 8 GLN A 175 PHE A 184 -1 O ASP A 183 N LYS A 115 SHEET 3 AA3 8 HIS A 161 ASP A 170 -1 N PHE A 164 O MET A 182 SHEET 4 AA3 8 TYR A 149 GLU A 158 -1 N TRP A 156 O LYS A 163 SHEET 5 AA3 8 SER A 51 THR A 63 -1 N ILE A 56 O MET A 151 SHEET 6 AA3 8 ARG A 210 ASN A 221 -1 O ARG A 220 N ILE A 53 SHEET 7 AA3 8 LEU A 254 ALA A 258 -1 O LEU A 254 N VAL A 214 SHEET 8 AA3 8 TRP A 245 ALA A 249 -1 N GLY A 248 O TRP A 255 SHEET 1 AA4 3 TYR A 287 GLU A 295 0 SHEET 2 AA4 3 LYS A 298 LEU A 305 -1 O ASN A 300 N TYR A 293 SHEET 3 AA4 3 GLY A 342 SER A 346 -1 O GLN A 345 N LEU A 299 SHEET 1 AA5 4 ASN A 331 ILE A 336 0 SHEET 2 AA5 4 GLN A 312 TYR A 320 -1 N ILE A 319 O ASN A 331 SHEET 3 AA5 4 TYR A 354 ASP A 361 -1 O LYS A 356 N GLU A 318 SHEET 4 AA5 4 THR A 366 LYS A 372 -1 O VAL A 371 N ALA A 355 CRYST1 93.854 93.854 87.287 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011456 0.00000