HEADER TRANSCRIPTION 29-JUN-23 8PN4 TITLE TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BARH-LIKE 2 HOMEOBOX PROTEIN; COMPND 3 CHAIN: A, D, G, J, M; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: B, E, H, K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA; COMPND 11 CHAIN: C, F, I, L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BARHL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20A-SBP; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, TRANSCRIPTION FACTOR, DNA-BINDING, PROTEIN-DNA KEYWDS 2 COMPLEX, DNA-BINDING DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,Y.YIN,A.POPOV,J.TAIPALE REVDAT 1 10-JUL-24 8PN4 0 JRNL AUTH E.MORGUNOVA,Y.YIN,A.POPOV,J.TAIPALE JRNL TITL TRANSCRIPTION FACTOR BARHL2 BOUND TO DNA SEQUENCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.4520 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2440 REMARK 3 NUCLEIC ACID ATOMS : 1942 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.351 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.377 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.331 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4787 ; 0.006 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 3479 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6676 ; 1.272 ; 1.735 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8010 ; 0.411 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 763 ; 5.852 ; 5.618 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ; 5.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;19.761 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 820 ; 0.130 ; 0.235 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4264 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1060 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 0.907 ; 2.061 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1130 ; 0.905 ; 2.061 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1403 ; 1.554 ; 3.695 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1404 ; 1.554 ; 3.695 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3657 ; 1.033 ; 2.134 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3658 ; 1.033 ; 2.134 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5273 ; 1.667 ; 3.825 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15955 ; 4.106 ;38.240 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15946 ; 4.097 ;38.200 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 232 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4339 -2.4863 6.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.3334 REMARK 3 T33: 0.1687 T12: 0.0082 REMARK 3 T13: -0.1153 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 6.6728 L22: 6.5328 REMARK 3 L33: 5.1365 L12: -0.8028 REMARK 3 L13: -0.0943 L23: -0.4929 REMARK 3 S TENSOR REMARK 3 S11: -0.1008 S12: 0.0801 S13: -0.1968 REMARK 3 S21: -0.0357 S22: 0.0916 S23: -0.1494 REMARK 3 S31: 0.0735 S32: 0.0977 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2169 5.9305 16.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.3756 REMARK 3 T33: 0.2046 T12: 0.0456 REMARK 3 T13: -0.1200 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 7.8629 L22: 4.0829 REMARK 3 L33: 3.6409 L12: -2.0214 REMARK 3 L13: 2.5181 L23: -1.3717 REMARK 3 S TENSOR REMARK 3 S11: -0.3718 S12: -0.5429 S13: 0.4626 REMARK 3 S21: 0.4020 S22: 0.2614 S23: -0.1518 REMARK 3 S31: -0.1338 S32: 0.1336 S33: 0.1104 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 232 D 290 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6074 -26.8009 11.2250 REMARK 3 T TENSOR REMARK 3 T11: 0.3666 T22: 0.3158 REMARK 3 T33: 0.0567 T12: 0.1312 REMARK 3 T13: -0.1218 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 6.7752 L22: 9.5084 REMARK 3 L33: 3.8461 L12: 0.5876 REMARK 3 L13: 1.3003 L23: 0.2456 REMARK 3 S TENSOR REMARK 3 S11: 0.2187 S12: 0.1763 S13: -0.1419 REMARK 3 S21: -0.4063 S22: -0.2206 S23: 0.1790 REMARK 3 S31: 0.5250 S32: -0.0132 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 24 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4714 -24.4414 17.3286 REMARK 3 T TENSOR REMARK 3 T11: 0.4227 T22: 0.4815 REMARK 3 T33: 0.3078 T12: 0.1251 REMARK 3 T13: -0.0449 T23: 0.1238 REMARK 3 L TENSOR REMARK 3 L11: 5.1406 L22: 5.1952 REMARK 3 L33: 7.0964 L12: 1.0536 REMARK 3 L13: -1.3134 L23: 3.0616 REMARK 3 S TENSOR REMARK 3 S11: 0.1548 S12: 0.0239 S13: 0.2296 REMARK 3 S21: -0.2512 S22: 0.0352 S23: -0.8731 REMARK 3 S31: 0.3028 S32: 1.0993 S33: -0.1899 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 233 G 292 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5960 20.5714 -0.7817 REMARK 3 T TENSOR REMARK 3 T11: 0.1229 T22: 0.3450 REMARK 3 T33: 0.2480 T12: 0.0207 REMARK 3 T13: -0.1070 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.9763 L22: 7.3082 REMARK 3 L33: 6.1911 L12: 1.3912 REMARK 3 L13: -2.0003 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: -0.1362 S13: -0.3234 REMARK 3 S21: -0.1709 S22: 0.1097 S23: -0.5569 REMARK 3 S31: -0.3669 S32: -0.1866 S33: -0.1740 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 24 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9612 11.4033 -10.6851 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.4540 REMARK 3 T33: 0.4473 T12: -0.0582 REMARK 3 T13: -0.1195 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 9.8710 L22: 2.9411 REMARK 3 L33: 3.5924 L12: 1.4961 REMARK 3 L13: -4.2408 L23: 0.2337 REMARK 3 S TENSOR REMARK 3 S11: -0.6280 S12: 0.3718 S13: -0.7359 REMARK 3 S21: -0.3016 S22: 0.3400 S23: -0.3417 REMARK 3 S31: 0.1644 S32: 0.1601 S33: 0.2880 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 232 J 289 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0790 -16.7992 -19.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.4306 REMARK 3 T33: 0.3126 T12: -0.0172 REMARK 3 T13: -0.2113 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.7201 L22: 6.7406 REMARK 3 L33: 7.8111 L12: -0.3529 REMARK 3 L13: -0.8764 L23: -0.9062 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: 0.2844 S13: 0.6016 REMARK 3 S21: -0.5382 S22: 0.0416 S23: 0.4833 REMARK 3 S31: -0.1548 S32: -0.6483 S33: -0.1259 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 24 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6068 -29.5705 -16.9509 REMARK 3 T TENSOR REMARK 3 T11: 0.3212 T22: 0.4005 REMARK 3 T33: 0.1723 T12: -0.0204 REMARK 3 T13: -0.1559 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.7914 L22: 3.2036 REMARK 3 L33: 8.5745 L12: -0.4974 REMARK 3 L13: -3.0562 L23: -0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.2973 S12: 0.0356 S13: 0.0019 REMARK 3 S21: -0.2697 S22: 0.2509 S23: -0.0462 REMARK 3 S31: 0.6136 S32: -0.0216 S33: 0.0464 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 244 M 289 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9718 -4.8022 -22.4249 REMARK 3 T TENSOR REMARK 3 T11: 0.4967 T22: 0.7467 REMARK 3 T33: 0.6296 T12: -0.0709 REMARK 3 T13: -0.0485 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 6.6853 L22: 8.9504 REMARK 3 L33: 3.7814 L12: 1.3586 REMARK 3 L13: -3.2015 L23: 1.8872 REMARK 3 S TENSOR REMARK 3 S11: -0.4032 S12: 0.3078 S13: 0.0297 REMARK 3 S21: -0.6305 S22: 0.1110 S23: -1.0284 REMARK 3 S31: 0.0905 S32: 0.5686 S33: 0.2922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1292131587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.22400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 1.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE,, PH 4.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 292 REMARK 465 VAL A 293 REMARK 465 THR D 291 REMARK 465 ALA D 292 REMARK 465 VAL D 293 REMARK 465 PRO G 232 REMARK 465 VAL G 293 REMARK 465 GLN J 290 REMARK 465 THR J 291 REMARK 465 ALA J 292 REMARK 465 VAL J 293 REMARK 465 PRO M 232 REMARK 465 ARG M 233 REMARK 465 LYS M 234 REMARK 465 ALA M 235 REMARK 465 ARG M 236 REMARK 465 THR M 237 REMARK 465 ALA M 238 REMARK 465 PHE M 239 REMARK 465 SER M 240 REMARK 465 ASP M 241 REMARK 465 HIS M 242 REMARK 465 GLN M 243 REMARK 465 GLN M 290 REMARK 465 THR M 291 REMARK 465 ALA M 292 REMARK 465 VAL M 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 11 C4' REMARK 470 DC E 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG C 17 O HOH C 1201 2.13 REMARK 500 OP2 DC B 3 O HOH B 1201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 239 CG PHE A 239 CD2 0.172 REMARK 500 PHE A 239 CE1 PHE A 239 CZ 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 4 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 23 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT E 4 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG F 18 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT H 4 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA I 21 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC I 23 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT K 4 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG L 18 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA L 21 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN M 245 -54.84 -162.63 REMARK 500 TYR M 256 -32.36 -157.66 REMARK 500 LEU M 257 -96.17 -143.78 REMARK 500 GLN M 260 -64.48 -144.15 REMARK 500 ARG M 262 -41.64 61.30 REMARK 500 LYS M 288 -40.17 112.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PM5 RELATED DB: PDB REMARK 900 8PM5 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PM7 RELATED DB: PDB REMARK 900 8PM7 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PMC RELATED DB: PDB REMARK 900 8PMC CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PMF RELATED DB: PDB REMARK 900 8PMF CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PMV RELATED DB: PDB REMARK 900 8PMV CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PNA RELATED DB: PDB REMARK 900 8PNA CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA REMARK 900 RELATED ID: 8PNC RELATED DB: PDB REMARK 900 8PNC CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT DNA DBREF 8PN4 A 232 293 UNP Q9NY43 BARH2_HUMAN 232 293 DBREF 8PN4 B 1 12 PDB 8PN4 8PN4 1 12 DBREF 8PN4 C 13 24 PDB 8PN4 8PN4 13 24 DBREF 8PN4 D 232 293 UNP Q9NY43 BARH2_HUMAN 232 293 DBREF 8PN4 E 1 12 PDB 8PN4 8PN4 1 12 DBREF 8PN4 F 13 24 PDB 8PN4 8PN4 13 24 DBREF 8PN4 G 232 293 UNP Q9NY43 BARH2_HUMAN 232 293 DBREF 8PN4 H 1 12 PDB 8PN4 8PN4 1 12 DBREF 8PN4 I 13 24 PDB 8PN4 8PN4 13 24 DBREF 8PN4 J 232 293 UNP Q9NY43 BARH2_HUMAN 232 293 DBREF 8PN4 K 1 12 PDB 8PN4 8PN4 1 12 DBREF 8PN4 L 13 24 PDB 8PN4 8PN4 13 24 DBREF 8PN4 M 232 293 UNP Q9NY43 BARH2_HUMAN 232 293 SEQRES 1 A 62 PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN LEU SEQRES 2 A 62 ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR LEU SEQRES 3 A 62 SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU ASN SEQRES 4 A 62 LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN ARG SEQRES 5 A 62 ARG THR LYS TRP LYS ARG GLN THR ALA VAL SEQRES 1 B 12 DC DG DC DT DA DA DC DC DG DG DT DT SEQRES 1 C 12 DA DA DC DC DG DG DT DT DA DG DC DG SEQRES 1 D 62 PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN LEU SEQRES 2 D 62 ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR LEU SEQRES 3 D 62 SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU ASN SEQRES 4 D 62 LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN ARG SEQRES 5 D 62 ARG THR LYS TRP LYS ARG GLN THR ALA VAL SEQRES 1 E 12 DC DG DC DT DA DA DC DC DG DG DT DT SEQRES 1 F 12 DA DA DC DC DG DG DT DT DA DG DC DG SEQRES 1 G 62 PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN LEU SEQRES 2 G 62 ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR LEU SEQRES 3 G 62 SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU ASN SEQRES 4 G 62 LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN ARG SEQRES 5 G 62 ARG THR LYS TRP LYS ARG GLN THR ALA VAL SEQRES 1 H 12 DC DG DC DT DA DA DC DC DG DG DT DT SEQRES 1 I 12 DA DA DC DC DG DG DT DT DA DG DC DG SEQRES 1 J 62 PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN LEU SEQRES 2 J 62 ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR LEU SEQRES 3 J 62 SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU ASN SEQRES 4 J 62 LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN ARG SEQRES 5 J 62 ARG THR LYS TRP LYS ARG GLN THR ALA VAL SEQRES 1 K 12 DC DG DC DT DA DA DC DC DG DG DT DT SEQRES 1 L 12 DA DA DC DC DG DG DT DT DA DG DC DG SEQRES 1 M 62 PRO ARG LYS ALA ARG THR ALA PHE SER ASP HIS GLN LEU SEQRES 2 M 62 ASN GLN LEU GLU ARG SER PHE GLU ARG GLN LYS TYR LEU SEQRES 3 M 62 SER VAL GLN ASP ARG MET ASP LEU ALA ALA ALA LEU ASN SEQRES 4 M 62 LEU THR ASP THR GLN VAL LYS THR TRP TYR GLN ASN ARG SEQRES 5 M 62 ARG THR LYS TRP LYS ARG GLN THR ALA VAL HET ACT B1101 4 HETNAM ACT ACETATE ION FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 HOH *170(H2 O) HELIX 1 AA1 SER A 240 GLN A 254 1 15 HELIX 2 AA2 SER A 258 LEU A 269 1 12 HELIX 3 AA3 THR A 272 THR A 291 1 20 HELIX 4 AA4 SER D 240 GLN D 254 1 15 HELIX 5 AA5 SER D 258 LEU D 269 1 12 HELIX 6 AA6 THR D 272 LYS D 288 1 17 HELIX 7 AA7 SER G 240 GLN G 254 1 15 HELIX 8 AA8 SER G 258 LEU G 269 1 12 HELIX 9 AA9 THR G 272 GLN G 290 1 19 HELIX 10 AB1 SER J 240 GLN J 254 1 15 HELIX 11 AB2 SER J 258 LEU J 269 1 12 HELIX 12 AB3 THR J 272 ARG J 289 1 18 HELIX 13 AB4 ASN M 245 ARG M 253 1 9 HELIX 14 AB5 ARG M 262 ASN M 270 1 9 HELIX 15 AB6 THR M 272 TRP M 287 1 16 CRYST1 39.426 134.560 64.491 90.00 93.18 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025364 0.000000 0.001407 0.00000 SCALE2 0.000000 0.007432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015530 0.00000