HEADER HYDROLASE 30-JUN-23 8PNO TITLE THE MGF3(H2O) TRANSITION STATE ANALOG COMPLEX OF E. COLI YIHX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHATASE YIHX; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-D-GLUCOSE-1-P PHOSPHATASE,ALPHA-D-GLUCOSE-1- COMPND 5 PHOSPHATASE,HALOACID DEHALOGENASE-LIKE PHOSPHATASE 4,HAD4; COMPND 6 EC: 3.1.3.10; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YIHX, B3885, JW5566; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHATASE, HAD SUPERFAMILY, TRANSITION STATE ANALOG COMPLEX, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BAUMANN,D.ZAPPALA,Y.JIN REVDAT 1 10-JUL-24 8PNO 0 JRNL AUTH P.BAUMANN,D.ZAPPALA,Y.JIN JRNL TITL THE MGF3(H2O)- TRANSITION STATE ANALOG COMPLEX OF E. COLI JRNL TITL 2 YIHX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -3.87000 REMARK 3 B33 (A**2) : 3.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.56000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3392 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3025 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4559 ; 1.481 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7037 ; 0.489 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 7.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 8.552 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;15.471 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 493 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3800 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 694 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 3.183 ; 4.098 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1602 ; 3.182 ; 4.099 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 4.802 ; 6.129 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2000 ; 4.801 ; 6.132 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1790 ; 3.721 ; 4.342 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1791 ; 3.721 ; 4.342 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2561 ; 5.431 ; 6.379 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3848 ; 7.690 ;51.554 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3849 ; 7.689 ;51.557 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8PNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292127109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 58.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML YIHX IN TRIS-HCL 25 MM PH REMARK 280 7.5, NACL 150 MM, MGCL2 20 MM, NAF 30 MM WAS MIXED 1:1 RATIO REMARK 280 WITH PRECIPITANT CONTAINING MES 55.5 MM, IMIDAZOLE 44.5 MM PH REMARK 280 6.5, 20% PEG500, 30 MM MGCL2, 30 MM CACL2, 20% GLYCEROL, 10% REMARK 280 PEG4000. THE CRYSTALS ARE FURTHER SOAKED WITH THE PRECIPITANT REMARK 280 SUPPLEMENTED WITH 50 MM MGCL2 AND 100 MM NH4F, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.66250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 200 REMARK 465 GLU B 201 REMARK 465 HIS B 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -61.67 -100.17 REMARK 500 VAL A 10 -63.02 -139.27 REMARK 500 MET A 40 75.35 -108.95 REMARK 500 ASP A 186 -171.43 -170.34 REMARK 500 GLU A 201 -55.31 -138.70 REMARK 500 VAL B 10 -55.33 -136.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 18 0.08 SIDE CHAIN REMARK 500 ARG B 49 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 KQB A 302 MG1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD1 REMARK 620 2 KQB A 302 O1 88.9 REMARK 620 3 KQB A 302 F1 96.5 88.9 REMARK 620 4 KQB A 302 F2 91.6 89.7 171.8 REMARK 620 5 KQB A 302 F3 81.7 170.3 94.6 88.1 REMARK 620 6 HOH A 429 O 168.3 101.8 88.4 84.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 6 OD2 REMARK 620 2 GLY A 8 O 88.0 REMARK 620 3 ASP A 166 OD1 86.6 82.4 REMARK 620 4 HOH A 405 O 82.2 161.6 81.5 REMARK 620 5 HOH A 445 O 174.2 86.5 91.0 102.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD1 REMARK 620 2 ASP A 25 OD2 51.2 REMARK 620 3 HOH A 421 O 102.1 66.8 REMARK 620 4 HOH A 500 O 81.7 95.3 60.5 REMARK 620 5 THR B 115 O 125.4 90.1 92.3 146.7 REMARK 620 6 GLU B 120 OE1 70.5 92.7 156.7 136.2 75.9 REMARK 620 7 GLU B 120 OE2 72.9 122.4 148.9 88.5 116.0 51.8 REMARK 620 8 HOH B 411 O 158.3 146.7 84.2 83.6 74.3 111.0 90.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 115 O REMARK 620 2 GLU A 120 OE1 77.4 REMARK 620 3 GLU A 120 OE2 119.4 51.6 REMARK 620 4 HOH A 442 O 79.7 109.6 88.1 REMARK 620 5 ASP B 25 OD1 122.7 73.7 76.1 156.9 REMARK 620 6 ASP B 25 OD2 80.9 88.4 121.8 149.7 50.3 REMARK 620 7 HOH B 451 O 85.4 153.2 153.4 86.9 99.6 68.5 REMARK 620 8 HOH B 490 O 148.8 133.7 87.3 85.9 76.8 99.2 66.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 KQB B 302 MG1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD1 REMARK 620 2 KQB B 302 O1 103.8 REMARK 620 3 KQB B 302 F1 89.8 90.2 REMARK 620 4 KQB B 302 F2 92.6 90.8 177.1 REMARK 620 5 KQB B 302 F3 79.2 174.4 94.6 84.3 REMARK 620 6 HOH B 438 O 165.1 90.9 92.7 84.6 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 6 OD2 REMARK 620 2 GLY B 8 O 94.8 REMARK 620 3 ASP B 166 OD1 90.7 85.5 REMARK 620 4 HOH B 407 O 85.2 172.9 87.5 REMARK 620 5 HOH B 427 O 176.1 81.6 90.5 98.6 REMARK 620 N 1 2 3 4 DBREF 8PNO A 1 199 UNP P0A8Y3 YIHX_ECOLI 1 199 DBREF 8PNO B 1 199 UNP P0A8Y3 YIHX_ECOLI 1 199 SEQADV 8PNO LEU A 200 UNP P0A8Y3 EXPRESSION TAG SEQADV 8PNO GLU A 201 UNP P0A8Y3 EXPRESSION TAG SEQADV 8PNO HIS A 202 UNP P0A8Y3 EXPRESSION TAG SEQADV 8PNO LEU B 200 UNP P0A8Y3 EXPRESSION TAG SEQADV 8PNO GLU B 201 UNP P0A8Y3 EXPRESSION TAG SEQADV 8PNO HIS B 202 UNP P0A8Y3 EXPRESSION TAG SEQRES 1 A 202 MET LEU TYR ILE PHE ASP LEU GLY ASN VAL ILE VAL ASP SEQRES 2 A 202 ILE ASP PHE ASN ARG VAL LEU GLY ALA TRP SER ASP LEU SEQRES 3 A 202 THR ARG ILE PRO LEU ALA SER LEU LYS LYS SER PHE HIS SEQRES 4 A 202 MET GLY GLU ALA PHE HIS GLN HIS GLU ARG GLY GLU ILE SEQRES 5 A 202 SER ASP GLU ALA PHE ALA GLU ALA LEU CYS HIS GLU MET SEQRES 6 A 202 ALA LEU PRO LEU SER TYR GLU GLN PHE SER HIS GLY TRP SEQRES 7 A 202 GLN ALA VAL PHE VAL ALA LEU ARG PRO GLU VAL ILE ALA SEQRES 8 A 202 ILE MET HIS LYS LEU ARG GLU GLN GLY HIS ARG VAL VAL SEQRES 9 A 202 VAL LEU SER ASN THR ASN ARG LEU HIS THR THR PHE TRP SEQRES 10 A 202 PRO GLU GLU TYR PRO GLU ILE ARG ASP ALA ALA ASP HIS SEQRES 11 A 202 ILE TYR LEU SER GLN ASP LEU GLY MET ARG LYS PRO GLU SEQRES 12 A 202 ALA ARG ILE TYR GLN HIS VAL LEU GLN ALA GLU GLY PHE SEQRES 13 A 202 SER PRO SER ASP THR VAL PHE PHE ASP ASP ASN ALA ASP SEQRES 14 A 202 ASN ILE GLU GLY ALA ASN GLN LEU GLY ILE THR SER ILE SEQRES 15 A 202 LEU VAL LYS ASP LYS THR THR ILE PRO ASP TYR PHE ALA SEQRES 16 A 202 LYS VAL LEU CYS LEU GLU HIS SEQRES 1 B 202 MET LEU TYR ILE PHE ASP LEU GLY ASN VAL ILE VAL ASP SEQRES 2 B 202 ILE ASP PHE ASN ARG VAL LEU GLY ALA TRP SER ASP LEU SEQRES 3 B 202 THR ARG ILE PRO LEU ALA SER LEU LYS LYS SER PHE HIS SEQRES 4 B 202 MET GLY GLU ALA PHE HIS GLN HIS GLU ARG GLY GLU ILE SEQRES 5 B 202 SER ASP GLU ALA PHE ALA GLU ALA LEU CYS HIS GLU MET SEQRES 6 B 202 ALA LEU PRO LEU SER TYR GLU GLN PHE SER HIS GLY TRP SEQRES 7 B 202 GLN ALA VAL PHE VAL ALA LEU ARG PRO GLU VAL ILE ALA SEQRES 8 B 202 ILE MET HIS LYS LEU ARG GLU GLN GLY HIS ARG VAL VAL SEQRES 9 B 202 VAL LEU SER ASN THR ASN ARG LEU HIS THR THR PHE TRP SEQRES 10 B 202 PRO GLU GLU TYR PRO GLU ILE ARG ASP ALA ALA ASP HIS SEQRES 11 B 202 ILE TYR LEU SER GLN ASP LEU GLY MET ARG LYS PRO GLU SEQRES 12 B 202 ALA ARG ILE TYR GLN HIS VAL LEU GLN ALA GLU GLY PHE SEQRES 13 B 202 SER PRO SER ASP THR VAL PHE PHE ASP ASP ASN ALA ASP SEQRES 14 B 202 ASN ILE GLU GLY ALA ASN GLN LEU GLY ILE THR SER ILE SEQRES 15 B 202 LEU VAL LYS ASP LYS THR THR ILE PRO ASP TYR PHE ALA SEQRES 16 B 202 LYS VAL LEU CYS LEU GLU HIS HET PEG A 301 7 HET KQB A 302 5 HET PG4 A 303 13 HET IMD A 304 5 HET EDO A 305 4 HET MG A 306 1 HET GOL A 307 6 HET GOL A 308 6 HET CA A 309 1 HET GOL B 301 6 HET KQB B 302 5 HET EDO B 303 4 HET PEG B 304 7 HET MG B 305 1 HET CA B 306 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM KQB TRIFLUOROMAGNESATE MONOHYDRATE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PEG 2(C4 H10 O3) FORMUL 4 KQB 2(F3 MG O) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 IMD C3 H5 N2 1+ FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 MG 2(MG 2+) FORMUL 9 GOL 3(C3 H8 O3) FORMUL 11 CA 2(CA 2+) FORMUL 18 HOH *231(H2 O) HELIX 1 AA1 PHE A 16 ARG A 28 1 13 HELIX 2 AA2 PRO A 30 PHE A 38 1 9 HELIX 3 AA3 GLY A 41 ARG A 49 1 9 HELIX 4 AA4 SER A 53 ALA A 66 1 14 HELIX 5 AA5 SER A 70 GLN A 79 1 10 HELIX 6 AA6 ARG A 86 GLN A 99 1 14 HELIX 7 AA7 TRP A 117 GLU A 120 5 4 HELIX 8 AA8 TYR A 121 ASP A 126 1 6 HELIX 9 AA9 SER A 134 GLY A 138 1 5 HELIX 10 AB1 GLU A 143 GLY A 155 1 13 HELIX 11 AB2 SER A 157 SER A 159 5 3 HELIX 12 AB3 ASN A 167 GLN A 176 1 10 HELIX 13 AB4 THR A 188 LEU A 200 1 13 HELIX 14 AB5 PHE B 16 ARG B 28 1 13 HELIX 15 AB6 PRO B 30 PHE B 38 1 9 HELIX 16 AB7 GLY B 41 ARG B 49 1 9 HELIX 17 AB8 SER B 53 ALA B 66 1 14 HELIX 18 AB9 SER B 70 GLN B 79 1 10 HELIX 19 AC1 ARG B 86 GLN B 99 1 14 HELIX 20 AC2 TRP B 117 GLU B 120 5 4 HELIX 21 AC3 TYR B 121 ASP B 126 1 6 HELIX 22 AC4 SER B 134 GLY B 138 1 5 HELIX 23 AC5 GLU B 143 GLY B 155 1 13 HELIX 24 AC6 SER B 157 SER B 159 5 3 HELIX 25 AC7 ASN B 167 GLN B 176 1 10 HELIX 26 AC8 THR B 188 CYS B 199 1 12 SHEET 1 AA1 5 HIS A 130 LEU A 133 0 SHEET 2 AA1 5 ARG A 102 SER A 107 1 N VAL A 105 O TYR A 132 SHEET 3 AA1 5 LEU A 2 PHE A 5 1 N TYR A 3 O ARG A 102 SHEET 4 AA1 5 THR A 161 ASP A 165 1 O PHE A 164 N ILE A 4 SHEET 5 AA1 5 THR A 180 LEU A 183 1 O ILE A 182 N PHE A 163 SHEET 1 AA2 2 VAL A 12 ASP A 15 0 SHEET 2 AA2 2 PHE A 82 LEU A 85 -1 O ALA A 84 N ASP A 13 SHEET 1 AA3 5 HIS B 130 LEU B 133 0 SHEET 2 AA3 5 ARG B 102 SER B 107 1 N VAL B 105 O TYR B 132 SHEET 3 AA3 5 LEU B 2 PHE B 5 1 N TYR B 3 O ARG B 102 SHEET 4 AA3 5 THR B 161 ASP B 165 1 O VAL B 162 N LEU B 2 SHEET 5 AA3 5 THR B 180 LEU B 183 1 O ILE B 182 N PHE B 163 SHEET 1 AA4 2 VAL B 12 ASP B 15 0 SHEET 2 AA4 2 PHE B 82 LEU B 85 -1 O ALA B 84 N ASP B 13 SSBOND 1 CYS A 199 CYS B 199 1555 2555 2.37 LINK OD1 ASP A 6 MG1 KQB A 302 1555 1555 1.95 LINK OD2 ASP A 6 MG MG A 306 1555 1555 2.02 LINK O GLY A 8 MG MG A 306 1555 1555 2.04 LINK OD1 ASP A 25 CA CA B 306 1555 1555 2.54 LINK OD2 ASP A 25 CA CA B 306 1555 1555 2.45 LINK O THR A 115 CA CA A 309 1555 1555 2.45 LINK OE1 GLU A 120 CA CA A 309 1555 1555 2.65 LINK OE2 GLU A 120 CA CA A 309 1555 1555 2.42 LINK OD1 ASP A 166 MG MG A 306 1555 1555 2.02 LINK MG1 KQB A 302 O HOH A 429 1555 1555 2.02 LINK MG MG A 306 O HOH A 405 1555 1555 2.03 LINK MG MG A 306 O HOH A 445 1555 1555 2.00 LINK CA CA A 309 O HOH A 442 1555 1555 2.43 LINK CA CA A 309 OD1 ASP B 25 1555 1555 2.64 LINK CA CA A 309 OD2 ASP B 25 1555 1555 2.42 LINK CA CA A 309 O HOH B 451 1555 1555 2.47 LINK CA CA A 309 O HOH B 490 1555 1555 2.57 LINK O HOH A 421 CA CA B 306 1555 1555 2.36 LINK O HOH A 500 CA CA B 306 1555 1555 2.74 LINK OD1 ASP B 6 MG1 KQB B 302 1555 1555 1.96 LINK OD2 ASP B 6 MG MG B 305 1555 1555 2.01 LINK O GLY B 8 MG MG B 305 1555 1555 2.03 LINK O THR B 115 CA CA B 306 1555 1555 2.62 LINK OE1 GLU B 120 CA CA B 306 1555 1555 2.58 LINK OE2 GLU B 120 CA CA B 306 1555 1555 2.44 LINK OD1 ASP B 166 MG MG B 305 1555 1555 1.98 LINK MG1 KQB B 302 O HOH B 438 1555 1555 2.00 LINK MG MG B 305 O HOH B 407 1555 1555 2.03 LINK MG MG B 305 O HOH B 427 1555 1555 2.00 LINK CA CA B 306 O HOH B 411 1555 1555 2.67 CISPEP 1 LYS A 141 PRO A 142 0 6.53 CISPEP 2 LYS B 141 PRO B 142 0 5.17 CRYST1 67.259 79.325 80.297 90.00 108.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014868 0.000000 0.004979 0.00000 SCALE2 0.000000 0.012606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013134 0.00000