HEADER FLAVOPROTEIN 03-JUL-23 8PO5 TITLE LACTOBACILLUS PLANTARUM LPDD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LPDD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GALLATE DECARBOXYLASE SUBUNIT D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS; SOURCE 3 ORGANISM_TAXID: 1578; SOURCE 4 GENE: LPDD, LP_0272; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPB1_S; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182036 KEYWDS UBID, UBIX, LPDD, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.GAHLOTH,D.LEYS REVDAT 1 17-JAN-24 8PO5 0 JRNL AUTH D.GAHLOTH,D.LEYS JRNL TITL GALLATE DECARBOXYLASE SUBUNIT D, LPDD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.9900 - 3.8200 0.99 3124 144 0.1654 0.1991 REMARK 3 2 3.8200 - 3.0300 0.99 2973 170 0.1771 0.2743 REMARK 3 3 3.0300 - 2.6500 1.00 2963 153 0.2124 0.2700 REMARK 3 4 2.6500 - 2.4000 1.00 3001 119 0.2214 0.2444 REMARK 3 5 2.4000 - 2.2300 1.00 2952 140 0.2512 0.3002 REMARK 3 6 2.2300 - 2.1000 1.00 2937 151 0.2832 0.3205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.233 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.682 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1957 REMARK 3 ANGLE : 0.866 2663 REMARK 3 CHIRALITY : 0.057 315 REMARK 3 PLANARITY : 0.006 341 REMARK 3 DIHEDRAL : 2.831 1163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2418 -27.9624 -12.9512 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.2590 REMARK 3 T33: 0.3504 T12: 0.0200 REMARK 3 T13: -0.0226 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 5.9685 L22: 3.7970 REMARK 3 L33: 5.0493 L12: 4.7672 REMARK 3 L13: -4.2720 L23: -3.5584 REMARK 3 S TENSOR REMARK 3 S11: -0.3443 S12: 0.4185 S13: -0.3185 REMARK 3 S21: -0.3398 S22: 0.4145 S23: 0.1883 REMARK 3 S31: 0.3090 S32: -0.3178 S33: 0.0430 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0397 -23.2853 -7.0967 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.2059 REMARK 3 T33: 0.2130 T12: -0.0166 REMARK 3 T13: -0.0204 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 3.0684 L22: 3.4746 REMARK 3 L33: 5.1716 L12: -2.0834 REMARK 3 L13: -3.9231 L23: 2.3670 REMARK 3 S TENSOR REMARK 3 S11: 0.1037 S12: 0.3150 S13: -0.1304 REMARK 3 S21: -0.0638 S22: -0.1128 S23: -0.1164 REMARK 3 S31: -0.0363 S32: -0.1502 S33: 0.0521 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1495 -12.0624 -5.1469 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.2938 REMARK 3 T33: 0.1914 T12: 0.0194 REMARK 3 T13: 0.0469 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 4.5991 L22: 4.1638 REMARK 3 L33: 6.6487 L12: -1.1222 REMARK 3 L13: 3.6709 L23: -2.5671 REMARK 3 S TENSOR REMARK 3 S11: 0.2259 S12: 0.5749 S13: 0.0598 REMARK 3 S21: -0.0098 S22: -0.2913 S23: 0.0484 REMARK 3 S31: -0.5486 S32: -0.0414 S33: 0.1164 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8088 -8.4902 1.0667 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.6497 REMARK 3 T33: 0.5058 T12: -0.2410 REMARK 3 T13: 0.0990 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 4.1286 L22: 4.2834 REMARK 3 L33: 4.2015 L12: -4.1461 REMARK 3 L13: 1.5726 L23: -1.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.5587 S12: 0.5920 S13: 0.2956 REMARK 3 S21: -0.5775 S22: 0.2998 S23: -1.6085 REMARK 3 S31: 0.8200 S32: 1.0287 S33: 0.3554 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8850 -15.6412 -10.9818 REMARK 3 T TENSOR REMARK 3 T11: 0.3568 T22: 0.1845 REMARK 3 T33: 0.2768 T12: 0.0207 REMARK 3 T13: 0.0037 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.8841 L22: 1.8377 REMARK 3 L33: 4.5498 L12: 0.2134 REMARK 3 L13: -1.9707 L23: 0.3813 REMARK 3 S TENSOR REMARK 3 S11: 0.4619 S12: 0.0682 S13: -0.1682 REMARK 3 S21: -0.0552 S22: -0.2175 S23: 0.0476 REMARK 3 S31: -0.3602 S32: 0.1671 S33: -0.1508 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3308 -22.3621 -16.7186 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.2050 REMARK 3 T33: 0.2172 T12: 0.0602 REMARK 3 T13: 0.0131 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.7835 L22: 5.0883 REMARK 3 L33: 5.0567 L12: 4.1509 REMARK 3 L13: 2.4726 L23: 0.8731 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: 0.8456 S13: -0.4221 REMARK 3 S21: -0.0121 S22: 0.0647 S23: -0.2391 REMARK 3 S31: 0.0973 S32: -0.1520 S33: -0.2903 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1366 -13.1339 -45.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.2232 REMARK 3 T33: 0.2521 T12: 0.0234 REMARK 3 T13: -0.0229 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 4.2969 L22: 9.4284 REMARK 3 L33: 6.6840 L12: 5.8112 REMARK 3 L13: -3.9379 L23: -3.6538 REMARK 3 S TENSOR REMARK 3 S11: 0.2219 S12: -0.1567 S13: 0.2228 REMARK 3 S21: 0.1907 S22: -0.3504 S23: -0.1657 REMARK 3 S31: -0.0781 S32: 0.1172 S33: 0.0239 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3966 -7.1325 -40.5158 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.2129 REMARK 3 T33: 0.1936 T12: -0.0048 REMARK 3 T13: -0.0066 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 3.6767 L22: 4.5576 REMARK 3 L33: 3.2619 L12: 4.1486 REMARK 3 L13: 1.8762 L23: 1.6545 REMARK 3 S TENSOR REMARK 3 S11: -0.1408 S12: 0.3311 S13: -0.0963 REMARK 3 S21: -0.0319 S22: 0.1738 S23: 0.1416 REMARK 3 S31: 0.0482 S32: -0.0479 S33: -0.0736 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2821 -5.1561 -29.2946 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.1746 REMARK 3 T33: 0.1963 T12: -0.0334 REMARK 3 T13: 0.0261 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 7.4684 L22: 4.8403 REMARK 3 L33: 1.7750 L12: -5.6105 REMARK 3 L13: 1.0658 L23: -1.9589 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.2632 S13: -0.1519 REMARK 3 S21: 0.2328 S22: 0.1336 S23: 0.2644 REMARK 3 S31: -0.1516 S32: -0.0208 S33: -0.1455 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6332 0.7319 -25.5348 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.4093 REMARK 3 T33: 0.5317 T12: 0.0386 REMARK 3 T13: 0.1813 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 8.8619 L22: 8.3142 REMARK 3 L33: 5.5286 L12: -7.0261 REMARK 3 L13: -6.6324 L23: 6.1949 REMARK 3 S TENSOR REMARK 3 S11: -0.1537 S12: 0.6536 S13: -0.2188 REMARK 3 S21: 0.8230 S22: -0.1314 S23: 1.7278 REMARK 3 S31: 0.2896 S32: -1.1838 S33: 0.1162 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5409 -11.0264 -32.7686 REMARK 3 T TENSOR REMARK 3 T11: 0.2782 T22: 0.2597 REMARK 3 T33: 0.1768 T12: -0.0150 REMARK 3 T13: 0.0118 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 8.0322 L22: 3.8496 REMARK 3 L33: 3.0273 L12: -0.2662 REMARK 3 L13: 2.2716 L23: 0.0363 REMARK 3 S TENSOR REMARK 3 S11: 0.1794 S12: -0.0558 S13: -0.1519 REMARK 3 S21: 0.0641 S22: -0.0885 S23: 0.3547 REMARK 3 S31: 0.3772 S32: -0.3002 S33: -0.0833 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1001 -16.8463 -39.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.2269 T22: 0.2133 REMARK 3 T33: 0.1551 T12: -0.0361 REMARK 3 T13: -0.0246 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.0120 L22: 4.6526 REMARK 3 L33: 4.0747 L12: -2.8842 REMARK 3 L13: -3.6859 L23: 0.9096 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: 0.2464 S13: -0.4861 REMARK 3 S21: 0.0652 S22: 0.0963 S23: -0.0484 REMARK 3 S31: 0.1451 S32: -0.2082 S33: 0.0301 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292131618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18833 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 75.033 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-CL PH8.5, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 30% PEG4K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.49000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.41000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.49000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.41000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.49000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.41000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.75000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.49000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.50000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.50000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 374 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLU A 124 REMARK 465 LYS A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 127 REMARK 465 TYR A 128 REMARK 465 TYR A 129 REMARK 465 GLY A 130 REMARK 465 GLN A 131 REMARK 465 ASP A 132 REMARK 465 GLU A 133 REMARK 465 GLN A 134 REMARK 465 PRO A 135 REMARK 465 ARG A 136 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 ALA B 123 REMARK 465 GLU B 124 REMARK 465 LYS B 125 REMARK 465 PRO B 126 REMARK 465 GLU B 127 REMARK 465 TYR B 128 REMARK 465 TYR B 129 REMARK 465 GLY B 130 REMARK 465 GLN B 131 REMARK 465 ASP B 132 REMARK 465 GLU B 133 REMARK 465 GLN B 134 REMARK 465 PRO B 135 REMARK 465 ARG B 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 351 O HOH A 357 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 -104.44 -111.44 REMARK 500 SER B 55 -106.35 -107.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 HIS A 61 ND1 98.8 REMARK 620 3 ASP A 63 OD2 97.5 112.4 REMARK 620 4 HOH A 351 O 108.7 91.1 141.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 35 NE2 REMARK 620 2 HIS B 61 ND1 102.3 REMARK 620 3 ASP B 63 OD2 102.2 109.7 REMARK 620 4 HOH B 362 O 106.7 95.6 136.2 REMARK 620 N 1 2 3 DBREF 8PO5 A 1 136 UNP F9UT68 LPDD_LACPL 1 136 DBREF 8PO5 B 1 136 UNP F9UT68 LPDD_LACPL 1 136 SEQADV 8PO5 HIS A -5 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS A -4 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS A -3 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS A -2 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS A -1 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS A 0 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS B -5 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS B -4 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS B -3 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS B -2 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS B -1 UNP F9UT68 EXPRESSION TAG SEQADV 8PO5 HIS B 0 UNP F9UT68 EXPRESSION TAG SEQRES 1 A 142 HIS HIS HIS HIS HIS HIS MET ALA THR PHE THR THR GLU SEQRES 2 A 142 GLN ALA GLY TYR GLN MET GLN ALA ILE LEU GLN VAL ILE SEQRES 3 A 142 GLY TYR ASP LEU LEU ILE VAL VAL THR GLY GLY THR ASN SEQRES 4 A 142 PRO HIS ILE GLY ASP VAL THR THR LEU THR ALA SER THR SEQRES 5 A 142 VAL PRO GLU THR VAL LYS PHE PRO SER HIS ASP GLY ARG SEQRES 6 A 142 PHE HIS LYS ASP ASN PHE ILE SER GLU ARG MET ALA LYS SEQRES 7 A 142 ARG ILE GLN ARG TYR LEU ALA GLY SER CYS THR ILE THR SEQRES 8 A 142 ALA GLY ILE HIS VAL ASN GLN ILE THR LYS ALA GLN ILE SEQRES 9 A 142 ALA ALA ALA ALA PRO MET THR ASP ASP LEU SER ARG GLN SEQRES 10 A 142 ILE ILE SER TRP LEU GLN ALA HIS PRO VAL GLN ALA GLU SEQRES 11 A 142 LYS PRO GLU TYR TYR GLY GLN ASP GLU GLN PRO ARG SEQRES 1 B 142 HIS HIS HIS HIS HIS HIS MET ALA THR PHE THR THR GLU SEQRES 2 B 142 GLN ALA GLY TYR GLN MET GLN ALA ILE LEU GLN VAL ILE SEQRES 3 B 142 GLY TYR ASP LEU LEU ILE VAL VAL THR GLY GLY THR ASN SEQRES 4 B 142 PRO HIS ILE GLY ASP VAL THR THR LEU THR ALA SER THR SEQRES 5 B 142 VAL PRO GLU THR VAL LYS PHE PRO SER HIS ASP GLY ARG SEQRES 6 B 142 PHE HIS LYS ASP ASN PHE ILE SER GLU ARG MET ALA LYS SEQRES 7 B 142 ARG ILE GLN ARG TYR LEU ALA GLY SER CYS THR ILE THR SEQRES 8 B 142 ALA GLY ILE HIS VAL ASN GLN ILE THR LYS ALA GLN ILE SEQRES 9 B 142 ALA ALA ALA ALA PRO MET THR ASP ASP LEU SER ARG GLN SEQRES 10 B 142 ILE ILE SER TRP LEU GLN ALA HIS PRO VAL GLN ALA GLU SEQRES 11 B 142 LYS PRO GLU TYR TYR GLY GLN ASP GLU GLN PRO ARG HET MN A 201 1 HET MN B 201 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *144(H2 O) HELIX 1 AA1 ASP A 63 GLN A 75 1 13 HELIX 2 AA2 ARG A 76 LEU A 78 5 3 HELIX 3 AA3 THR A 94 ALA A 100 1 7 HELIX 4 AA4 ALA A 100 HIS A 119 1 20 HELIX 5 AA5 ASP B 63 GLN B 75 1 13 HELIX 6 AA6 ARG B 76 LEU B 78 5 3 HELIX 7 AA7 THR B 94 ALA B 100 1 7 HELIX 8 AA8 ALA B 100 HIS B 119 1 20 SHEET 1 AA1 6 MET A 1 GLN A 8 0 SHEET 2 AA1 6 TYR A 11 ILE A 20 -1 O LEU A 17 N ALA A 2 SHEET 3 AA1 6 ASP A 23 GLY A 31 -1 O ASP A 23 N ILE A 20 SHEET 4 AA1 6 CYS A 82 HIS A 89 1 O THR A 83 N ILE A 26 SHEET 5 AA1 6 ASP A 38 LEU A 42 -1 N THR A 40 O ILE A 84 SHEET 6 AA1 6 GLU A 49 LYS A 52 -1 O GLU A 49 N THR A 41 SHEET 1 AA2 6 MET B 1 GLN B 8 0 SHEET 2 AA2 6 TYR B 11 ILE B 20 -1 O LEU B 17 N ALA B 2 SHEET 3 AA2 6 ASP B 23 GLY B 31 -1 O ASP B 23 N ILE B 20 SHEET 4 AA2 6 CYS B 82 HIS B 89 1 O THR B 83 N ILE B 26 SHEET 5 AA2 6 ASP B 38 LEU B 42 -1 N THR B 40 O ILE B 84 SHEET 6 AA2 6 GLU B 49 LYS B 52 -1 O VAL B 51 N VAL B 39 LINK NE2 HIS A 35 MN MN A 201 1555 1555 2.25 LINK ND1 HIS A 61 MN MN A 201 1555 1555 2.06 LINK OD2 ASP A 63 MN MN A 201 1555 1555 1.99 LINK MN MN A 201 O HOH A 351 1555 1555 2.64 LINK NE2 HIS B 35 MN MN B 201 1555 1555 2.15 LINK ND1 HIS B 61 MN MN B 201 1555 1555 2.04 LINK OD2 ASP B 63 MN MN B 201 1555 1555 2.00 LINK MN MN B 201 O HOH B 362 1555 1555 2.68 CRYST1 53.500 92.980 126.820 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007885 0.00000