data_8PQ8 # _entry.id 8PQ8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8PQ8 pdb_00008pq8 10.2210/pdb8pq8/pdb WWPDB D_1292131753 ? ? EMDB EMD-17821 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-02-12 ? 2 'EM metadata' 1 0 2025-02-12 ? 3 FSC 1 0 2025-02-12 ? 4 'Half map' 1 0 2025-02-12 1 5 'Half map' 1 0 2025-02-12 2 6 Image 1 0 2025-02-12 ? 7 Mask 1 0 2025-02-12 ? 8 'Primary map' 1 0 2025-02-12 ? 9 'Structure model' 1 1 2025-03-05 ? 10 'EM metadata' 1 1 2025-03-05 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 9 'Structure model' 'Data collection' 2 9 'Structure model' 'Database references' 3 10 'EM metadata' 'Database references' 4 10 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 9 'Structure model' citation 2 9 'Structure model' citation_author 3 9 'Structure model' em_admin 4 10 'EM metadata' citation 5 10 'EM metadata' citation_author 6 10 'EM metadata' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 9 'Structure model' '_citation.country' 2 9 'Structure model' '_citation.journal_abbrev' 3 9 'Structure model' '_citation.journal_id_CSD' 4 9 'Structure model' '_citation.journal_id_ISSN' 5 9 'Structure model' '_citation.journal_volume' 6 9 'Structure model' '_citation.page_first' 7 9 'Structure model' '_citation.page_last' 8 9 'Structure model' '_citation.pdbx_database_id_DOI' 9 9 'Structure model' '_citation.pdbx_database_id_PubMed' 10 9 'Structure model' '_citation.title' 11 9 'Structure model' '_citation.year' 12 9 'Structure model' '_em_admin.last_update' 13 10 'EM metadata' '_citation.country' 14 10 'EM metadata' '_citation.journal_abbrev' 15 10 'EM metadata' '_citation.journal_id_CSD' 16 10 'EM metadata' '_citation.journal_id_ISSN' 17 10 'EM metadata' '_citation.journal_volume' 18 10 'EM metadata' '_citation.page_first' 19 10 'EM metadata' '_citation.page_last' 20 10 'EM metadata' '_citation.pdbx_database_id_DOI' 21 10 'EM metadata' '_citation.pdbx_database_id_PubMed' 22 10 'EM metadata' '_citation.title' 23 10 'EM metadata' '_citation.year' 24 10 'EM metadata' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8PQ8 _pdbx_database_status.recvd_initial_deposition_date 2023-07-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Sak Single Strand Annealing Protein from Staphylococcal Bacteriophage 80a - dCTD' _pdbx_database_related.db_id EMD-17821 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ignacio.mir-sanchis@umu.se _pdbx_contact_author.name_first Ignacio _pdbx_contact_author.name_last Mir-Sanchis _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6536-0045 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Debiasi-Anders, G.' 1 0000-0003-0545-6579 'Mir-Sanchis, I.' 2 0000-0002-6536-0045 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 1889 _citation.page_last 1889 _citation.title 'Phage parasites targeting phage homologous recombinases provide antiviral immunity.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-57156-3 _citation.pdbx_database_id_PubMed 39987160 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Debiasi-Anders, G.' 1 0000-0003-0545-6579 primary 'Qiao, C.' 2 0000-0002-2642-3672 primary 'Salim, A.' 3 ? primary 'Li, N.' 4 ? primary 'Mir-Sanchis, I.' 5 0000-0002-6536-0045 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Topoisomerase 19417.621 1 ? 'Truncation of CTD at N142' ? ? 2 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Sak Single-Strand Annealing Protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKHHHHHHPMSDYDIPTTENLYFQGAMGMTEQTLFEQLNSKNVNDHTEQKNGLTYLAWSYAHQELKKIDPNYTVKVHEFP HPDINTENYFVPYLATPEGYFVQVSVTVKDSTETEWLPVLDFRNKSLAKGSATTFDINKAQKRCFVKASALHGLGLYIYN GEELPSASD ; _entity_poly.pdbx_seq_one_letter_code_can ;MKHHHHHHPMSDYDIPTTENLYFQGAMGMTEQTLFEQLNSKNVNDHTEQKNGLTYLAWSYAHQELKKIDPNYTVKVHEFP HPDINTENYFVPYLATPEGYFVQVSVTVKDSTETEWLPVLDFRNKSLAKGSATTFDINKAQKRCFVKASALHGLGLYIYN GEELPSASD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 PRO n 1 10 MET n 1 11 SER n 1 12 ASP n 1 13 TYR n 1 14 ASP n 1 15 ILE n 1 16 PRO n 1 17 THR n 1 18 THR n 1 19 GLU n 1 20 ASN n 1 21 LEU n 1 22 TYR n 1 23 PHE n 1 24 GLN n 1 25 GLY n 1 26 ALA n 1 27 MET n 1 28 GLY n 1 29 MET n 1 30 THR n 1 31 GLU n 1 32 GLN n 1 33 THR n 1 34 LEU n 1 35 PHE n 1 36 GLU n 1 37 GLN n 1 38 LEU n 1 39 ASN n 1 40 SER n 1 41 LYS n 1 42 ASN n 1 43 VAL n 1 44 ASN n 1 45 ASP n 1 46 HIS n 1 47 THR n 1 48 GLU n 1 49 GLN n 1 50 LYS n 1 51 ASN n 1 52 GLY n 1 53 LEU n 1 54 THR n 1 55 TYR n 1 56 LEU n 1 57 ALA n 1 58 TRP n 1 59 SER n 1 60 TYR n 1 61 ALA n 1 62 HIS n 1 63 GLN n 1 64 GLU n 1 65 LEU n 1 66 LYS n 1 67 LYS n 1 68 ILE n 1 69 ASP n 1 70 PRO n 1 71 ASN n 1 72 TYR n 1 73 THR n 1 74 VAL n 1 75 LYS n 1 76 VAL n 1 77 HIS n 1 78 GLU n 1 79 PHE n 1 80 PRO n 1 81 HIS n 1 82 PRO n 1 83 ASP n 1 84 ILE n 1 85 ASN n 1 86 THR n 1 87 GLU n 1 88 ASN n 1 89 TYR n 1 90 PHE n 1 91 VAL n 1 92 PRO n 1 93 TYR n 1 94 LEU n 1 95 ALA n 1 96 THR n 1 97 PRO n 1 98 GLU n 1 99 GLY n 1 100 TYR n 1 101 PHE n 1 102 VAL n 1 103 GLN n 1 104 VAL n 1 105 SER n 1 106 VAL n 1 107 THR n 1 108 VAL n 1 109 LYS n 1 110 ASP n 1 111 SER n 1 112 THR n 1 113 GLU n 1 114 THR n 1 115 GLU n 1 116 TRP n 1 117 LEU n 1 118 PRO n 1 119 VAL n 1 120 LEU n 1 121 ASP n 1 122 PHE n 1 123 ARG n 1 124 ASN n 1 125 LYS n 1 126 SER n 1 127 LEU n 1 128 ALA n 1 129 LYS n 1 130 GLY n 1 131 SER n 1 132 ALA n 1 133 THR n 1 134 THR n 1 135 PHE n 1 136 ASP n 1 137 ILE n 1 138 ASN n 1 139 LYS n 1 140 ALA n 1 141 GLN n 1 142 LYS n 1 143 ARG n 1 144 CYS n 1 145 PHE n 1 146 VAL n 1 147 LYS n 1 148 ALA n 1 149 SER n 1 150 ALA n 1 151 LEU n 1 152 HIS n 1 153 GLY n 1 154 LEU n 1 155 GLY n 1 156 LEU n 1 157 TYR n 1 158 ILE n 1 159 TYR n 1 160 ASN n 1 161 GLY n 1 162 GLU n 1 163 GLU n 1 164 LEU n 1 165 PRO n 1 166 SER n 1 167 ALA n 1 168 SER n 1 169 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus phage 80alpha' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2911440 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ NA _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue NA _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell NA _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -27 ? ? ? A . n A 1 2 LYS 2 -26 ? ? ? A . n A 1 3 HIS 3 -25 ? ? ? A . n A 1 4 HIS 4 -24 ? ? ? A . n A 1 5 HIS 5 -23 ? ? ? A . n A 1 6 HIS 6 -22 ? ? ? A . n A 1 7 HIS 7 -21 ? ? ? A . n A 1 8 HIS 8 -20 ? ? ? A . n A 1 9 PRO 9 -19 ? ? ? A . n A 1 10 MET 10 -18 ? ? ? A . n A 1 11 SER 11 -17 ? ? ? A . n A 1 12 ASP 12 -16 ? ? ? A . n A 1 13 TYR 13 -15 ? ? ? A . n A 1 14 ASP 14 -14 ? ? ? A . n A 1 15 ILE 15 -13 ? ? ? A . n A 1 16 PRO 16 -12 ? ? ? A . n A 1 17 THR 17 -11 ? ? ? A . n A 1 18 THR 18 -10 ? ? ? A . n A 1 19 GLU 19 -9 ? ? ? A . n A 1 20 ASN 20 -8 ? ? ? A . n A 1 21 LEU 21 -7 ? ? ? A . n A 1 22 TYR 22 -6 ? ? ? A . n A 1 23 PHE 23 -5 ? ? ? A . n A 1 24 GLN 24 -4 ? ? ? A . n A 1 25 GLY 25 -3 ? ? ? A . n A 1 26 ALA 26 -2 ? ? ? A . n A 1 27 MET 27 -1 ? ? ? A . n A 1 28 GLY 28 0 ? ? ? A . n A 1 29 MET 29 1 ? ? ? A . n A 1 30 THR 30 2 ? ? ? A . n A 1 31 GLU 31 3 ? ? ? A . n A 1 32 GLN 32 4 4 GLN GLN A . n A 1 33 THR 33 5 5 THR THR A . n A 1 34 LEU 34 6 6 LEU LEU A . n A 1 35 PHE 35 7 7 PHE PHE A . n A 1 36 GLU 36 8 8 GLU GLU A . n A 1 37 GLN 37 9 9 GLN GLN A . n A 1 38 LEU 38 10 10 LEU LEU A . n A 1 39 ASN 39 11 11 ASN ASN A . n A 1 40 SER 40 12 12 SER SER A . n A 1 41 LYS 41 13 13 LYS LYS A . n A 1 42 ASN 42 14 14 ASN ASN A . n A 1 43 VAL 43 15 15 VAL VAL A . n A 1 44 ASN 44 16 16 ASN ASN A . n A 1 45 ASP 45 17 17 ASP ASP A . n A 1 46 HIS 46 18 18 HIS HIS A . n A 1 47 THR 47 19 19 THR THR A . n A 1 48 GLU 48 20 20 GLU GLU A . n A 1 49 GLN 49 21 21 GLN GLN A . n A 1 50 LYS 50 22 22 LYS LYS A . n A 1 51 ASN 51 23 23 ASN ASN A . n A 1 52 GLY 52 24 24 GLY GLY A . n A 1 53 LEU 53 25 25 LEU LEU A . n A 1 54 THR 54 26 26 THR THR A . n A 1 55 TYR 55 27 27 TYR TYR A . n A 1 56 LEU 56 28 28 LEU LEU A . n A 1 57 ALA 57 29 29 ALA ALA A . n A 1 58 TRP 58 30 30 TRP TRP A . n A 1 59 SER 59 31 31 SER SER A . n A 1 60 TYR 60 32 32 TYR TYR A . n A 1 61 ALA 61 33 33 ALA ALA A . n A 1 62 HIS 62 34 34 HIS HIS A . n A 1 63 GLN 63 35 35 GLN GLN A . n A 1 64 GLU 64 36 36 GLU GLU A . n A 1 65 LEU 65 37 37 LEU LEU A . n A 1 66 LYS 66 38 38 LYS LYS A . n A 1 67 LYS 67 39 39 LYS LYS A . n A 1 68 ILE 68 40 40 ILE ILE A . n A 1 69 ASP 69 41 41 ASP ASP A . n A 1 70 PRO 70 42 42 PRO PRO A . n A 1 71 ASN 71 43 43 ASN ASN A . n A 1 72 TYR 72 44 44 TYR TYR A . n A 1 73 THR 73 45 45 THR THR A . n A 1 74 VAL 74 46 46 VAL VAL A . n A 1 75 LYS 75 47 47 LYS LYS A . n A 1 76 VAL 76 48 48 VAL VAL A . n A 1 77 HIS 77 49 49 HIS HIS A . n A 1 78 GLU 78 50 50 GLU GLU A . n A 1 79 PHE 79 51 51 PHE PHE A . n A 1 80 PRO 80 52 52 PRO PRO A . n A 1 81 HIS 81 53 53 HIS HIS A . n A 1 82 PRO 82 54 54 PRO PRO A . n A 1 83 ASP 83 55 55 ASP ASP A . n A 1 84 ILE 84 56 56 ILE ILE A . n A 1 85 ASN 85 57 57 ASN ASN A . n A 1 86 THR 86 58 58 THR THR A . n A 1 87 GLU 87 59 59 GLU GLU A . n A 1 88 ASN 88 60 60 ASN ASN A . n A 1 89 TYR 89 61 61 TYR TYR A . n A 1 90 PHE 90 62 62 PHE PHE A . n A 1 91 VAL 91 63 63 VAL VAL A . n A 1 92 PRO 92 64 64 PRO PRO A . n A 1 93 TYR 93 65 65 TYR TYR A . n A 1 94 LEU 94 66 66 LEU LEU A . n A 1 95 ALA 95 67 67 ALA ALA A . n A 1 96 THR 96 68 68 THR THR A . n A 1 97 PRO 97 69 69 PRO PRO A . n A 1 98 GLU 98 70 70 GLU GLU A . n A 1 99 GLY 99 71 71 GLY GLY A . n A 1 100 TYR 100 72 72 TYR TYR A . n A 1 101 PHE 101 73 73 PHE PHE A . n A 1 102 VAL 102 74 74 VAL VAL A . n A 1 103 GLN 103 75 75 GLN GLN A . n A 1 104 VAL 104 76 76 VAL VAL A . n A 1 105 SER 105 77 77 SER SER A . n A 1 106 VAL 106 78 78 VAL VAL A . n A 1 107 THR 107 79 79 THR THR A . n A 1 108 VAL 108 80 80 VAL VAL A . n A 1 109 LYS 109 81 81 LYS LYS A . n A 1 110 ASP 110 82 82 ASP ASP A . n A 1 111 SER 111 83 83 SER SER A . n A 1 112 THR 112 84 84 THR THR A . n A 1 113 GLU 113 85 85 GLU GLU A . n A 1 114 THR 114 86 86 THR THR A . n A 1 115 GLU 115 87 87 GLU GLU A . n A 1 116 TRP 116 88 88 TRP TRP A . n A 1 117 LEU 117 89 89 LEU LEU A . n A 1 118 PRO 118 90 90 PRO PRO A . n A 1 119 VAL 119 91 91 VAL VAL A . n A 1 120 LEU 120 92 92 LEU LEU A . n A 1 121 ASP 121 93 93 ASP ASP A . n A 1 122 PHE 122 94 94 PHE PHE A . n A 1 123 ARG 123 95 95 ARG ARG A . n A 1 124 ASN 124 96 96 ASN ASN A . n A 1 125 LYS 125 97 97 LYS LYS A . n A 1 126 SER 126 98 98 SER SER A . n A 1 127 LEU 127 99 99 LEU LEU A . n A 1 128 ALA 128 100 100 ALA ALA A . n A 1 129 LYS 129 101 101 LYS LYS A . n A 1 130 GLY 130 102 102 GLY GLY A . n A 1 131 SER 131 103 103 SER SER A . n A 1 132 ALA 132 104 104 ALA ALA A . n A 1 133 THR 133 105 105 THR THR A . n A 1 134 THR 134 106 106 THR THR A . n A 1 135 PHE 135 107 107 PHE PHE A . n A 1 136 ASP 136 108 108 ASP ASP A . n A 1 137 ILE 137 109 109 ILE ILE A . n A 1 138 ASN 138 110 110 ASN ASN A . n A 1 139 LYS 139 111 111 LYS LYS A . n A 1 140 ALA 140 112 112 ALA ALA A . n A 1 141 GLN 141 113 113 GLN GLN A . n A 1 142 LYS 142 114 114 LYS LYS A . n A 1 143 ARG 143 115 115 ARG ARG A . n A 1 144 CYS 144 116 116 CYS CYS A . n A 1 145 PHE 145 117 117 PHE PHE A . n A 1 146 VAL 146 118 118 VAL VAL A . n A 1 147 LYS 147 119 119 LYS LYS A . n A 1 148 ALA 148 120 120 ALA ALA A . n A 1 149 SER 149 121 121 SER SER A . n A 1 150 ALA 150 122 122 ALA ALA A . n A 1 151 LEU 151 123 123 LEU LEU A . n A 1 152 HIS 152 124 124 HIS HIS A . n A 1 153 GLY 153 125 125 GLY GLY A . n A 1 154 LEU 154 126 126 LEU LEU A . n A 1 155 GLY 155 127 127 GLY GLY A . n A 1 156 LEU 156 128 128 LEU LEU A . n A 1 157 TYR 157 129 129 TYR TYR A . n A 1 158 ILE 158 130 130 ILE ILE A . n A 1 159 TYR 159 131 131 TYR TYR A . n A 1 160 ASN 160 132 ? ? ? A . n A 1 161 GLY 161 133 ? ? ? A . n A 1 162 GLU 162 134 ? ? ? A . n A 1 163 GLU 163 135 ? ? ? A . n A 1 164 LEU 164 136 ? ? ? A . n A 1 165 PRO 165 137 ? ? ? A . n A 1 166 SER 166 138 ? ? ? A . n A 1 167 ALA 167 139 ? ? ? A . n A 1 168 SER 168 140 ? ? ? A . n A 1 169 ASP 169 141 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 134 HOH HOH A . B 2 HOH 2 202 133 HOH HOH A . B 2 HOH 3 203 132 HOH HOH A . B 2 HOH 4 204 136 HOH HOH A . B 2 HOH 5 205 135 HOH HOH A . B 2 HOH 6 206 140 HOH HOH A . B 2 HOH 7 207 139 HOH HOH A . B 2 HOH 8 208 137 HOH HOH A . B 2 HOH 9 209 138 HOH HOH A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8PQ8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8PQ8 _struct.title 'Sak Single Strand Annealing Protein from Staphylococcal Bacteriophage 80a - dCTD' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8PQ8 _struct_keywords.text ;Annealase, SSAP, Single Strand Annealing, Single Strand Binding, Recombineering, Recombination, SaPI, Bacteriophage, Staphylococcal, Complex, SaPI induction, SaPI2, Mobile Genetic Element, MGE, PICI, Phage-Inducible Chromosomal Island, C18, Ring ; _struct_keywords.pdbx_keywords RECOMBINATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C8CGY8_9CAUD _struct_ref.pdbx_db_accession C8CGY8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTEQTLFEQLNSKNVNDHTEQKNGLTYLAWSYAHQELKKIDPNYTVKVHEFPHPDINTENYFVPYLATPEGYFVQVSVTV KDSTETEWLPVLDFRNKSLAKGSATTFDINKAQKRCFVKASALHGLGLYIYNGEELPSASD ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8PQ8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 29 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C8CGY8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 141 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8PQ8 MET A 1 ? UNP C8CGY8 ? ? 'initiating methionine' -27 1 1 8PQ8 LYS A 2 ? UNP C8CGY8 ? ? 'expression tag' -26 2 1 8PQ8 HIS A 3 ? UNP C8CGY8 ? ? 'expression tag' -25 3 1 8PQ8 HIS A 4 ? UNP C8CGY8 ? ? 'expression tag' -24 4 1 8PQ8 HIS A 5 ? UNP C8CGY8 ? ? 'expression tag' -23 5 1 8PQ8 HIS A 6 ? UNP C8CGY8 ? ? 'expression tag' -22 6 1 8PQ8 HIS A 7 ? UNP C8CGY8 ? ? 'expression tag' -21 7 1 8PQ8 HIS A 8 ? UNP C8CGY8 ? ? 'expression tag' -20 8 1 8PQ8 PRO A 9 ? UNP C8CGY8 ? ? 'expression tag' -19 9 1 8PQ8 MET A 10 ? UNP C8CGY8 ? ? 'expression tag' -18 10 1 8PQ8 SER A 11 ? UNP C8CGY8 ? ? 'expression tag' -17 11 1 8PQ8 ASP A 12 ? UNP C8CGY8 ? ? 'expression tag' -16 12 1 8PQ8 TYR A 13 ? UNP C8CGY8 ? ? 'expression tag' -15 13 1 8PQ8 ASP A 14 ? UNP C8CGY8 ? ? 'expression tag' -14 14 1 8PQ8 ILE A 15 ? UNP C8CGY8 ? ? 'expression tag' -13 15 1 8PQ8 PRO A 16 ? UNP C8CGY8 ? ? 'expression tag' -12 16 1 8PQ8 THR A 17 ? UNP C8CGY8 ? ? 'expression tag' -11 17 1 8PQ8 THR A 18 ? UNP C8CGY8 ? ? 'expression tag' -10 18 1 8PQ8 GLU A 19 ? UNP C8CGY8 ? ? 'expression tag' -9 19 1 8PQ8 ASN A 20 ? UNP C8CGY8 ? ? 'expression tag' -8 20 1 8PQ8 LEU A 21 ? UNP C8CGY8 ? ? 'expression tag' -7 21 1 8PQ8 TYR A 22 ? UNP C8CGY8 ? ? 'expression tag' -6 22 1 8PQ8 PHE A 23 ? UNP C8CGY8 ? ? 'expression tag' -5 23 1 8PQ8 GLN A 24 ? UNP C8CGY8 ? ? 'expression tag' -4 24 1 8PQ8 GLY A 25 ? UNP C8CGY8 ? ? 'expression tag' -3 25 1 8PQ8 ALA A 26 ? UNP C8CGY8 ? ? 'expression tag' -2 26 1 8PQ8 MET A 27 ? UNP C8CGY8 ? ? 'expression tag' -1 27 1 8PQ8 GLY A 28 ? UNP C8CGY8 ? ? 'expression tag' 0 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 18-meric _pdbx_struct_assembly.oligomeric_count 18 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 -0.00000000 0.00000000 -0.00000000 1.00000000 -0.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 2 'point symmetry operation' ? ? 0.93970040 -0.34199876 0.00000015 60.02603997 0.34199876 0.93970040 0.00000072 -42.03272609 -0.00000038 -0.00000063 1.00000000 0.00015331 3 'point symmetry operation' ? ? 0.76601950 -0.64281733 -0.00000497 130.81855339 0.64281733 0.76601950 -0.00000064 -60.98850151 0.00000422 -0.00000271 1.00000000 -0.00050728 4 'point symmetry operation' ? ? 0.50001129 -0.86601889 -0.00000377 203.81497712 0.86601889 0.50001129 -0.00000212 -54.60921227 0.00000372 -0.00000220 1.00000000 -0.00046975 5 'point symmetry operation' ? ? 0.17360316 -0.98481569 -0.00000183 270.22907056 0.98481569 0.17360316 -0.00000213 -23.62559899 0.00000241 -0.00000143 1.00000000 -0.00030449 6 'point symmetry operation' ? ? -0.17360390 -0.98481556 -0.00000072 322.04564502 0.98481556 -0.17360390 -0.00000284 28.16424344 0.00000267 -0.00000120 1.00000000 -0.00038353 7 'point symmetry operation' ? ? -0.50001107 -0.86601901 -0.00000059 353.01286626 0.86601901 -0.50001107 -0.00000367 94.59889917 0.00000288 -0.00000234 1.00000000 -0.00028708 8 'point symmetry operation' ? ? -0.76601925 -0.64281763 0.00000229 359.40679693 0.64281763 -0.76601925 -0.00000436 167.58221344 0.00000455 -0.00000187 1.00000000 -0.00067645 9 'point symmetry operation' ? ? -0.93969975 -0.34200057 0.00000013 340.42608357 0.34200057 -0.93969975 0.00000001 238.38016941 0.00000011 0.00000006 1.00000000 -0.00002982 10 'point symmetry operation' ? ? -1.00000000 0.00000000 -0.00000000 298.40000000 -0.00000000 -1.00000000 -0.00000000 298.40000000 -0.00000000 -0.00000000 1.00000000 0.00000000 11 'point symmetry operation' ? ? -0.93970001 0.34199985 -0.00000008 238.37963848 -0.34199985 -0.93970001 -0.00000065 340.42696941 -0.00000030 -0.00000058 1.00000000 0.00013036 12 'point symmetry operation' ? ? -0.76602036 0.64281631 0.00000511 167.57760229 -0.64281631 -0.76602036 -0.00000011 359.40818538 0.00000384 -0.00000337 1.00000000 -0.00035148 13 'point symmetry operation' ? ? -0.50001065 0.86601926 0.00000314 94.59463543 -0.86601926 -0.50001065 0.00000244 353.01258118 0.00000369 -0.00000150 1.00000000 -0.00054969 14 'point symmetry operation' ? ? -0.17369974 0.98479866 -0.00000056 28.19118314 -0.98479866 -0.17369974 -0.00000010 322.04061055 -0.00000020 0.00000053 1.00000000 -0.00002554 15 'point symmetry operation' ? ? 0.17360249 0.98481581 0.00000121 -23.62780900 -0.98481581 0.17360249 0.00000332 270.22776057 0.00000306 -0.00000177 1.00000000 -0.00039281 16 'point symmetry operation' ? ? 0.50001047 0.86601936 0.00000044 -54.61098611 -0.86601936 0.50001047 0.00000344 203.81259959 0.00000276 -0.00000210 1.00000000 -0.00029142 17 'point symmetry operation' ? ? 0.76602046 0.64281620 -0.00000154 -60.98885743 -0.64281620 0.76602046 0.00000442 130.81478708 0.00000402 -0.00000240 1.00000000 -0.00050600 18 'point symmetry operation' ? ? 0.93970040 0.34199877 0.00000003 -42.03351262 -0.34199877 0.93970040 0.00000011 60.02679466 0.00000001 -0.00000012 1.00000000 0.00001279 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 33 ? SER A 40 ? THR A 5 SER A 12 1 ? 8 HELX_P HELX_P2 AA2 ALA A 57 ? ASP A 69 ? ALA A 29 ASP A 41 1 ? 13 HELX_P HELX_P3 AA3 THR A 133 ? ALA A 150 ? THR A 105 ALA A 122 1 ? 18 HELX_P HELX_P4 AA4 GLY A 155 ? TYR A 159 ? GLY A 127 TYR A 131 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 47 ? LYS A 50 ? THR A 19 LYS A 22 AA1 2 LEU A 53 ? LEU A 56 ? LEU A 25 LEU A 28 AA2 1 THR A 73 ? VAL A 76 ? THR A 45 VAL A 48 AA2 2 GLY A 99 ? VAL A 108 ? GLY A 71 VAL A 80 AA2 3 LEU A 94 ? THR A 96 ? LEU A 66 THR A 68 AA3 1 THR A 73 ? VAL A 76 ? THR A 45 VAL A 48 AA3 2 GLY A 99 ? VAL A 108 ? GLY A 71 VAL A 80 AA3 3 SER A 111 ? PRO A 118 ? SER A 83 PRO A 90 AA4 1 PHE A 79 ? PRO A 80 ? PHE A 51 PRO A 52 AA4 2 PHE A 90 ? VAL A 91 ? PHE A 62 VAL A 63 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 48 ? N GLU A 20 O TYR A 55 ? O TYR A 27 AA2 1 2 N LYS A 75 ? N LYS A 47 O SER A 105 ? O SER A 77 AA2 2 3 O PHE A 101 ? O PHE A 73 N LEU A 94 ? N LEU A 66 AA3 1 2 N LYS A 75 ? N LYS A 47 O SER A 105 ? O SER A 77 AA3 2 3 N VAL A 106 ? N VAL A 78 O GLU A 113 ? O GLU A 85 AA4 1 2 N PHE A 79 ? N PHE A 51 O VAL A 91 ? O VAL A 63 # _pdbx_entry_details.entry_id 8PQ8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8PQ8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;Fitting of the truncated AlphaFold prediction was done with ChimeraX and then subjected to real space refinement in PHENIX. The output was then repeatedly adjusted with Coot and verified in PHENIX. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ;AlphaFold prediction was done locally. CTD residues of the full-length AlphaFold prediction were deleted before fiting with ChimeraX. ; _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range 1-141 _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 8PQ8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'Symmetry expanded to C18, multiplying the stack by 18, from 75703 to 1365300 particles.' _em_3d_reconstruction.resolution 3.21 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 75703 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20mM Tris-HCl pH 7.6, 100mM NaCl, 1mM DTT' _em_buffer.pH 8.1 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name '18-mer ring cryoEM structure of the 80a-Sak NTD in apo state' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8PQ8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1600 _em_imaging.nominal_defocus_max 2900 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 190000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8PQ8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8PQ8 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8PQ8 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -27 ? A MET 1 2 1 Y 1 A LYS -26 ? A LYS 2 3 1 Y 1 A HIS -25 ? A HIS 3 4 1 Y 1 A HIS -24 ? A HIS 4 5 1 Y 1 A HIS -23 ? A HIS 5 6 1 Y 1 A HIS -22 ? A HIS 6 7 1 Y 1 A HIS -21 ? A HIS 7 8 1 Y 1 A HIS -20 ? A HIS 8 9 1 Y 1 A PRO -19 ? A PRO 9 10 1 Y 1 A MET -18 ? A MET 10 11 1 Y 1 A SER -17 ? A SER 11 12 1 Y 1 A ASP -16 ? A ASP 12 13 1 Y 1 A TYR -15 ? A TYR 13 14 1 Y 1 A ASP -14 ? A ASP 14 15 1 Y 1 A ILE -13 ? A ILE 15 16 1 Y 1 A PRO -12 ? A PRO 16 17 1 Y 1 A THR -11 ? A THR 17 18 1 Y 1 A THR -10 ? A THR 18 19 1 Y 1 A GLU -9 ? A GLU 19 20 1 Y 1 A ASN -8 ? A ASN 20 21 1 Y 1 A LEU -7 ? A LEU 21 22 1 Y 1 A TYR -6 ? A TYR 22 23 1 Y 1 A PHE -5 ? A PHE 23 24 1 Y 1 A GLN -4 ? A GLN 24 25 1 Y 1 A GLY -3 ? A GLY 25 26 1 Y 1 A ALA -2 ? A ALA 26 27 1 Y 1 A MET -1 ? A MET 27 28 1 Y 1 A GLY 0 ? A GLY 28 29 1 Y 1 A MET 1 ? A MET 29 30 1 Y 1 A THR 2 ? A THR 30 31 1 Y 1 A GLU 3 ? A GLU 31 32 1 Y 1 A ASN 132 ? A ASN 160 33 1 Y 1 A GLY 133 ? A GLY 161 34 1 Y 1 A GLU 134 ? A GLU 162 35 1 Y 1 A GLU 135 ? A GLU 163 36 1 Y 1 A LEU 136 ? A LEU 164 37 1 Y 1 A PRO 137 ? A PRO 165 38 1 Y 1 A SER 138 ? A SER 166 39 1 Y 1 A ALA 139 ? A ALA 167 40 1 Y 1 A SER 140 ? A SER 168 41 1 Y 1 A ASP 141 ? A ASP 169 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _em_admin.current_status REL _em_admin.deposition_date 2023-07-10 _em_admin.deposition_site PDBE _em_admin.entry_id 8PQ8 _em_admin.last_update 2025-03-05 _em_admin.map_release_date 2025-02-12 _em_admin.title 'Sak Single Strand Annealing Protein from Staphylococcal Bacteriophage 80a - dCTD' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM Tris-HCl 1 'Tris-HCl pH 7.6' 1 100 mM NaCl 2 'Sodium Chloride' 1 1 mM DTT 3 Dithiothreitol # _em_ctf_correction.details 'CTF correction was applied on-the-fly during data collection with CryoSPARC Live.' _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.46 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location NA _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2911440 _em_entity_assembly_naturalsource.organism 'Staphylococcus phage 80alpha' _em_entity_assembly_naturalsource.organelle NA _em_entity_assembly_naturalsource.organ NA _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue NA _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2.99 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TFS FALCON 4i (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4344 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.2.1 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 2.13.0 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'CTF correct on-the-fly with cryoSPARC Live' 4 1 ? ? cryoSPARC 4.2.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' 1.4 OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.20.1 'MODEL REFINEMENT' ? 10 ? 1 ? Coot '0.9.8.4 EL' 'INITIAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4.2.1 'FINAL EULER ASSIGNMENT' ? 12 1 ? ? cryoSPARC 4.2.1 CLASSIFICATION ? 13 1 ? ? ? ? RECONSTRUCTION 'Local refinement job after symmetry expansion' 14 1 ? ? cryoSPARC 4.2.1 'VOLUME SELECTION' ? 15 1 1 1 ? ? 'SERIES ALIGNMENT' ? 16 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 17 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 18 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 19 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 20 1 1 1 ? ? # _em_specimen.concentration 1 _em_specimen.details 'Monodisperse sample' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Knut and Alice Wallenberg Foundation' _pdbx_audit_support.country Sweden _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? # _atom_sites.entry_id 8PQ8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_